View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19677_high_11 (Length: 269)
Name: NF19677_high_11
Description: NF19677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19677_high_11 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 19 - 269
Target Start/End: Complemental strand, 27747858 - 27747608
Alignment:
| Q |
19 |
agatatagaaaagccgaaccgaatatgtgttgaacgataaaaagtaaacataactgccatatttaattactcctgtccactattgagtaaattgttggca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27747858 |
agatatagaaaagccgaaccgaatatgtgttgaacgataaaaagtaaacataactgccatatttaattactcctgtccactattgagtaaattgttggca |
27747759 |
T |
|
| Q |
119 |
gctacttgtaatagcttaaatagaagcaacaatacaatgtttatagaacacaaaaaataccttttaaattgtggatcggtgggatcaatagcatagtcag |
218 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27747758 |
gctgcttgtaatagcttaaatagaagcaacaatacaatgtttatagaacacaaaaaataccttttaaattgtggatcggtgggatcaatagcatagtcag |
27747659 |
T |
|
| Q |
219 |
gagaagagaaaaaatgtgcaaaacgtggatcatcactatatgtactgtttg |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27747658 |
gagaagagaaaaaatgtgcaaaacgtggatcatcactatatgtactgtttg |
27747608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 218
Target Start/End: Original strand, 38527224 - 38527270
Alignment:
| Q |
172 |
aaaataccttttaaattgtggatcggtgggatcaatagcatagtcag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38527224 |
aaaataccttttaaattgtggatcggtgggatcaatagcaaagtcag |
38527270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 112 - 269
Target Start/End: Complemental strand, 49518394 - 49518237
Alignment:
| Q |
112 |
gttggcagctacttgtaatagcttaaatagaagcaacaatacaatgtttatagaacacaaaaaataccttttaaattgtggatcggtgggatcaatagca |
211 |
Q |
| |
|
|||||||||| |||||||| ||| ||||| |||||| ||||| |||||||| |||||| ||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
49518394 |
gttggcagctgtttgtaataactttaatagtagcaactatacactgtttataaaacacagaaaataccttttatattgtggatcggtgggatcaatagca |
49518295 |
T |
|
| Q |
212 |
tagtcaggagaagagaaaaaatgtg---caaaacgtggatcatcactatatgtactgtttg |
269 |
Q |
| |
|
|||||||| |||||||| | ||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
49518294 |
tagtcagg---agagaaaagaagtgcaacaaaacgttgatcatcactatatgtactgtttg |
49518237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University