View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19677_high_15 (Length: 261)
Name: NF19677_high_15
Description: NF19677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19677_high_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 8 - 247
Target Start/End: Complemental strand, 25032454 - 25032215
Alignment:
| Q |
8 |
agcaattgtcatcggaaccacccaaactcgccatggcaccgccgaccaccgacagattgagccctctaccggacccactcctcatccatatactctcatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
25032454 |
agcaattgtcatcggaaccacccaaactcgccatggcaccgccgaccaccgacagattaagccctctaccggacccactcctcttccatatactctcatt |
25032355 |
T |
|
| Q |
108 |
cctcccaaccagaacctccgtggcaacaacgagtctcatctctcgcaggtggcgaaatctctggcagaatctacaagccttcgaattctccgacgactca |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25032354 |
cctcccaaccagaacctccgtggcaacaacgagtctcatctctcgcaggtggcgaaatctctggcagaatctacaagccttcgaattctccgacgactca |
25032255 |
T |
|
| Q |
208 |
cacgaagacggcaactggccaataatgttcagaaggtttg |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25032254 |
tacgaagacggcaactggccaataatgttcagaaggtttg |
25032215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 25922774 - 25922842
Alignment:
| Q |
103 |
tcattcctcccaaccagaacctccgtggcaacaacgagtctcatctctcgcaggtggcgaaatctctgg |
171 |
Q |
| |
|
||||| |||||||| |||||||| ||||| |||| || ||| |||||||||||||||| ||||||||| |
|
|
| T |
25922774 |
tcatttctcccaacgagaacctctgtggccacaatgaatcttgtctctcgcaggtggcgcaatctctgg |
25922842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 24523217 - 24523267
Alignment:
| Q |
94 |
catatactctcattcctcccaaccagaacctccgtggcaacaacgagtctc |
144 |
Q |
| |
|
||||||||||| ||||| ||||| ||||||||||||||||| | ||||||| |
|
|
| T |
24523217 |
catatactctccttcctaccaacaagaacctccgtggcaacgatgagtctc |
24523267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 171
Target Start/End: Original strand, 30076801 - 30076879
Alignment:
| Q |
93 |
ccatatactctcattcctcccaaccagaacctccgtggcaacaacgagtctcatctctcgcaggtggcgaaatctctgg |
171 |
Q |
| |
|
||||||||| || ||||||||||| |||||||||| ||||| | || |||| |||||| |||||||||| | |||||| |
|
|
| T |
30076801 |
ccatatactatccttcctcccaactcgaacctccgtcgcaaccatgactctcgtctctcacaggtggcgacacctctgg |
30076879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University