View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19677_high_17 (Length: 250)

Name: NF19677_high_17
Description: NF19677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19677_high_17
NF19677_high_17
[»] chr1 (17 HSPs)
chr1 (10-250)||(35829094-35829334)
chr1 (20-229)||(37463573-37463782)
chr1 (20-229)||(43241092-43241301)
chr1 (20-229)||(51441475-51441684)
chr1 (20-229)||(49348105-49348314)
chr1 (20-224)||(8671288-8671491)
chr1 (20-164)||(32083456-32083600)
chr1 (46-230)||(46227041-46227225)
chr1 (20-198)||(51601451-51601629)
chr1 (18-88)||(34827811-34827881)
chr1 (138-239)||(3877292-3877392)
chr1 (35-164)||(7813923-7814050)
chr1 (18-162)||(28528010-28528154)
chr1 (123-224)||(34827900-34828000)
chr1 (129-250)||(40419023-40419143)
chr1 (129-229)||(52836511-52836609)
chr1 (111-160)||(13027303-13027352)
[»] chr7 (22 HSPs)
chr7 (20-229)||(11593315-11593524)
chr7 (20-229)||(33350517-33350726)
chr7 (20-222)||(36651363-36651565)
chr7 (20-224)||(39907090-39907294)
chr7 (20-224)||(46356562-46356766)
chr7 (54-164)||(36870034-36870144)
chr7 (20-224)||(32629975-32630178)
chr7 (35-229)||(38896973-38897167)
chr7 (102-229)||(49028643-49028770)
chr7 (46-217)||(43793769-43793941)
chr7 (119-222)||(20499478-20499581)
chr7 (46-164)||(21520172-21520288)
chr7 (107-224)||(38606405-38606522)
chr7 (119-224)||(48055627-48055732)
chr7 (20-143)||(31004672-31004795)
chr7 (18-164)||(23087824-23087970)
chr7 (67-221)||(24177953-24178107)
chr7 (46-164)||(17101223-17101338)
chr7 (20-134)||(37616373-37616487)
chr7 (18-71)||(33572628-33572681)
chr7 (188-223)||(36870203-36870238)
chr7 (196-229)||(22346811-22346844)
[»] chr5 (17 HSPs)
chr5 (20-229)||(1288300-1288509)
chr5 (20-224)||(3394078-3394282)
chr5 (20-229)||(1274627-1274836)
chr5 (20-229)||(2076185-2076394)
chr5 (20-229)||(20318353-20318562)
chr5 (22-228)||(27294-27499)
chr5 (46-164)||(43558543-43558661)
chr5 (54-223)||(12493107-12493276)
chr5 (20-163)||(3301277-3301420)
chr5 (54-229)||(24177886-24178061)
chr5 (20-201)||(10638688-10638869)
chr5 (34-229)||(31502771-31502967)
chr5 (22-222)||(37123938-37124138)
chr5 (46-160)||(3096625-3096739)
chr5 (107-242)||(40383805-40383940)
chr5 (102-164)||(28977650-28977712)
chr5 (33-207)||(23979616-23979787)
[»] chr8 (13 HSPs)
chr8 (20-224)||(36565952-36566156)
chr8 (20-224)||(42854724-42854928)
chr8 (111-224)||(15216074-15216187)
chr8 (20-224)||(12492553-12492757)
chr8 (18-160)||(30578937-30579079)
chr8 (20-229)||(36544514-36544723)
chr8 (18-207)||(28300813-28301002)
chr8 (57-224)||(41445051-41445219)
chr8 (52-225)||(13588806-13588979)
chr8 (50-164)||(38666994-38667108)
chr8 (146-223)||(3284861-3284938)
chr8 (18-71)||(33830939-33830992)
chr8 (193-229)||(25984910-25984946)
[»] chr3 (13 HSPs)
chr3 (25-229)||(48221143-48221347)
chr3 (20-229)||(51448420-51448629)
chr3 (20-229)||(52138190-52138399)
chr3 (20-143)||(19757432-19757555)
chr3 (20-143)||(19736614-19736737)
chr3 (54-224)||(38849461-38849631)
chr3 (26-206)||(29816890-29817070)
chr3 (47-223)||(50630059-50630235)
chr3 (111-250)||(9258227-9258366)
chr3 (54-143)||(25190827-25190916)
chr3 (18-223)||(27916939-27917145)
chr3 (21-100)||(26592148-26592227)
chr3 (76-166)||(805376-805466)
[»] chr2 (18 HSPs)
chr2 (20-224)||(45368336-45368540)
chr2 (54-229)||(24584351-24584526)
chr2 (20-224)||(2609895-2610099)
chr2 (20-229)||(452327-452536)
chr2 (54-229)||(8180157-8180332)
chr2 (26-221)||(14769668-14769864)
chr2 (108-224)||(876521-876637)
chr2 (45-229)||(38453354-38453538)
chr2 (47-164)||(13148749-13148866)
chr2 (20-164)||(12475132-12475276)
chr2 (76-207)||(7135438-7135569)
chr2 (129-223)||(16292081-16292175)
chr2 (36-148)||(7292436-7292548)
chr2 (20-125)||(41763760-41763865)
chr2 (193-229)||(6465115-6465151)
chr2 (195-228)||(12904333-12904366)
chr2 (188-229)||(34502173-34502214)
chr2 (34-98)||(36038713-36038777)
[»] chr6 (14 HSPs)
chr6 (20-221)||(5258861-5259063)
chr6 (21-226)||(2208114-2208319)
chr6 (20-224)||(30670255-30670459)
chr6 (20-224)||(9706142-9706347)
chr6 (54-223)||(20428382-20428551)
chr6 (130-242)||(3629579-3629691)
chr6 (102-229)||(6082762-6082889)
chr6 (19-160)||(26291212-26291354)
chr6 (35-226)||(27790521-27790712)
chr6 (46-164)||(5631244-5631362)
chr6 (19-164)||(2680760-2680905)
chr6 (44-164)||(33495634-33495754)
chr6 (44-86)||(7079646-7079688)
chr6 (111-165)||(9369203-9369257)
[»] chr4 (26 HSPs)
chr4 (35-227)||(10776145-10776337)
chr4 (54-223)||(1212052-1212221)
chr4 (20-229)||(435594-435800)
chr4 (73-224)||(39707829-39707980)
chr4 (20-229)||(1777726-1777935)
chr4 (20-229)||(23907012-23907222)
chr4 (20-224)||(27450884-27451088)
chr4 (20-155)||(16002350-16002485)
chr4 (35-162)||(35556047-35556173)
chr4 (20-148)||(53707237-53707365)
chr4 (54-229)||(48623272-48623447)
chr4 (44-223)||(55769111-55769297)
chr4 (49-164)||(17666765-17666880)
chr4 (18-161)||(17668032-17668175)
chr4 (20-145)||(56374736-56374861)
chr4 (44-223)||(55833367-55833553)
chr4 (35-209)||(3272811-3272984)
chr4 (112-165)||(42037334-42037387)
chr4 (150-229)||(53703972-53704051)
chr4 (33-86)||(25867096-25867149)
chr4 (76-164)||(15183482-15183570)
chr4 (47-98)||(2296482-2296533)
chr4 (27-154)||(8918030-8918157)
chr4 (129-164)||(21060200-21060235)
chr4 (122-229)||(41427202-41427311)
chr4 (50-98)||(41427343-41427391)
[»] scaffold0286 (1 HSPs)
scaffold0286 (21-226)||(213-418)
[»] scaffold0018 (1 HSPs)
scaffold0018 (20-229)||(30830-31039)
[»] scaffold0606 (1 HSPs)
scaffold0606 (128-229)||(9030-9131)
[»] scaffold0113 (2 HSPs)
scaffold0113 (68-159)||(12351-12442)
scaffold0113 (188-229)||(13135-13176)
[»] scaffold0008 (1 HSPs)
scaffold0008 (38-164)||(48639-48767)
[»] scaffold0220 (1 HSPs)
scaffold0220 (105-217)||(25009-25121)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 250
Target Start/End: Original strand, 35829094 - 35829334
Alignment:
Q  10 aagaaaatgtcatacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaa 109  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35829094 aagaaaatgccatatgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaa 35829193  T
Q  110 gcatacatatcggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctat 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35829194 gcatacatatcggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctat 35829293  T
Q  210 tgttatgggaaaatcgtcggcgaccccatcttgtgtactca 250  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  35829294 tgttatgggaaaatcgtcggcgaccccatcttgtgtactca 35829334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 37463573 - 37463782
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    ||||| |||||| | |||||||||||||||| ||||||||||||| |||| | ||||||||| |||||||||| || || | |||| ||||||||||| |    
T  37463573 catacacttctaaggcttgtctcaaagtctctaacctcccattcatttccaccctcgactcttcaagcaggactacgtcatctgcaaaaagcatacatct 37463672  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| ||||||||||||||| ||||| ||||||||||||||  || |||  || ||||||| | |||| ||||||||||||||||||||||| |||    
T  37463673 cggtgctaactcttggatgtgttccgtaagaacatccaaaactaaagtaaaaaggtaagggcttagggttgacccttggtgcaatcctattgttatagga 37463772  T
Q  220 aaatcgtcgg 229  Q
    ||||| ||||    
T  37463773 aaatcatcgg 37463782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 43241092 - 43241301
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||  ||| | ||||| | |||||| |||| |||||| |||||||| || | || ||| ||||| | |||| ||||||||||| |    
T  43241092 catacgcttctaaggcttacctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatct 43241191  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| ||||||||||||||| || | |||||||||||||||  || ||| ||| || |||| | |||| |||||||||||||||||||||||||||    
T  43241192 cggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtgcaatcctattgttatggga 43241291  T
Q  220 aaatcgtcgg 229  Q
    ||||| ||||    
T  43241292 aaatcttcgg 43241301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 51441475 - 51441684
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    ||||| |||||| | |||| ||| | ||||| | |||||| |||| |||||| |||||||| || | || ||| ||||| | |||| ||||||||||| |    
T  51441475 catactcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatct 51441574  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| ||||||||||||||| || | |||||||||||||||   | ||| ||| || |||| | |||| |||||||||||||||||||||||||||    
T  51441575 cggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagaaaaaagataaggacttagggttgacccttggtgcaatcctattgttatggga 51441674  T
Q  220 aaatcgtcgg 229  Q
    ||||| ||||    
T  51441675 aaatcttcgg 51441684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 49348105 - 49348314
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| | ||||| | |||||| |||| |||||| |||||||| || | |  ||| ||||| | | || ||||||||||| |    
T  49348105 catacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccgagactacatcatctacaaaaagcatacatct 49348204  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| ||||||||||||||| || | |||||||||||||||  || ||| ||| || |||| |  ||| |||||||||||||||||||||||||||    
T  49348205 cggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggctgacccttggtgcaatcctattgttatggga 49348304  T
Q  220 aaatcgtcgg 229  Q
    ||||| ||||    
T  49348305 aaatcttcgg 49348314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 8671491 - 8671288
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| ||||||| | |||||| |||| |||||| |||||||| || | || ||| ||||| | |||| ||||||||||| |    
T  8671491 catacgcttctaaggcttgcctccaagtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatct 8671392  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| ||||||||||||||| || | ||||| |||||||||  || ||| ||| || |||| | |||| ||| |||||||| ||||||||||||||    
T  8671391 cggtgctaactcttggatgtgttccgtcaatacat-caaaactaaagtaaaaagataaggacttagggttgaccctaggtgcaattctattgttatggga 8671293  T
Q  220 aaatc 224  Q
    |||||    
T  8671292 aaatc 8671288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 32083456 - 32083600
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||  | |||| ||| | ||||| | ||||||||| || ||||| |||||||| ||||||| ||  ||||| | |||| ||||||||||| |    
T  32083456 catacgcttctgaggcttgcctccaggtctctagcctcccatttaactcctccctcgactcaccaagcaagattacatcatttgcaaaaagcatacatct 32083555  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaa 164  Q
    |||||||| |||||||||||||||||| |||||||||||||||||    
T  32083556 cggtgctaactcttggatgtgttctgtcagtacatccaaaactaa 32083600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 46 - 230
Target Start/End: Original strand, 46227041 - 46227225
Alignment:
Q  46 gtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctg 145  Q
    ||||| ||||||| |||||||| ||| |||||||||||||  ||| | ||||| | |||| || |||||||| | ||||||| |||||||| |||||  |    
T  46227041 gtctctaacctcctattcaatttctccctcgactctccaaatagggctacatcatatgcaaaaggcatacatcttggtgctaactcttggacgtgtttcg 46227140  T
Q  146 taagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaatcgtcggc 230  Q
    |||||||||||||||||||  || |||  || ||||||| | ||||||||||||||||  ||||| ||||  |||||||||||||    
T  46227141 taagtacatccaaaactaaagtaaaaaggtaagggcttagggttgatccttggtgcaactctattattataagaaaatcgtcggc 46227225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 51601629 - 51601451
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| | ||||| | |||||| |||| |||||| |||||||| || | || ||| ||||| | |||| ||||||||||| |    
T  51601629 catacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatct 51601530  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttgg 198  Q
    |||||||| ||||||||||||||| || | |||||||||||||||  || ||| |||||| |||| | |||| ||||||    
T  51601529 cggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagatatggacttagggttgacccttgg 51601451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 34827811 - 34827881
Alignment:
Q  18 gtcatacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagca 88  Q
    |||||| ||||||| | |||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  34827811 gtcataggcttctaaggcttgtctctaagtctctaacctcccattcaattcctctctcgactctccaagca 34827881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 3877392 - 3877292
Alignment:
Q  138 gtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaatcgtcggcgacccca 237  Q
    ||||||| |||||||||||||||||||| || ||| |||||| || ||| |||||||||| ||||||| |||||||| ||||||||||| || |||| ||    
T  3877392 gtgttctataagtacatccaaaactaaggtaaaaagatatggact-aaggttgatccttgatgcaatcatattgttacgggaaaatcgttggtgacctca 3877294  T
Q  238 tc 239  Q
    ||    
T  3877293 tc 3877292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 164
Target Start/End: Complemental strand, 7814050 - 7813923
Alignment:
Q  35 cttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttg 134  Q
    |||||||| ||||||| |||||||||||||||||||| |||||||||| ||||| ||| ||||| | |||| ||| ||||||| ||  || ||  |||||    
T  7814050 cttgtctccaagtctc-aacctcccattcaattcctccctcgactctcgaagcatgactacatcatctgcaaaaaacatacatctcaatgttaattcttg 7813952  T
Q  135 gatgtgttctgtaagtacatccaaaactaa 164  Q
    ||| |||| | |||||||||||||||||||    
T  7813951 gat-tgttttttaagtacatccaaaactaa 7813923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 28528154 - 28528010
Alignment:
Q  18 gtcatacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacat 117  Q
    |||||| | ||||| |||||||||| ||||||||||||||||||| ||||| || |||  |||| |||| || | || ||| | |||| | ||||| |||    
T  28528154 gtcatatgtttctaagacttgtctccaagtctccaacctcccatttaattcttccctcatctctacaagtagaatgatatcatctgcaaacagcatgcat 28528055  T
Q  118 atcggtgctagctcttggatgtgttctgtaagtacatccaaaact 162  Q
     | ||||||   |||||||||||||| ||||||||||||||||||    
T  28528054 cttggtgctcaatcttggatgtgttccgtaagtacatccaaaact 28528010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 123 - 224
Target Start/End: Original strand, 34827900 - 34828000
Alignment:
Q  123 tgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaa 222  Q
    ||||| |||||||||||||| |||||| ||||||||||||||  || |||  || || |||||| ||||||||| |||||| ||||||||||| ||||||    
T  34827900 tgctaactcttggatgtgttatgtaagaacatccaaaactaaagtaaaaaagtaaggtcttaagattgatcctt-gtgcaagcctattgttattggaaaa 34827998  T
Q  223 tc 224  Q
    ||    
T  34827999 tc 34828000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 250
Target Start/End: Complemental strand, 40419143 - 40419023
Alignment:
Q  129 ctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaatcgtcg 228  Q
    ||||||||||||||| ||||||||||||||||||||| |  ||| ||| | |||||   |||| | |||||||||| ||||||||||||||||||| |||    
T  40419143 ctcttggatgtgttccgtaagtacatccaaaactaaggtgaaaagataagtgcttagtgttgaacattggtgcaat-ctattgttatgggaaaatcttcg 40419045  T
Q  229 gcgaccccatcttgtgtactca 250  Q
    | | | ||| ||||||| ||||    
T  40419044 gtgtctccaccttgtgtcctca 40419023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 229
Target Start/End: Complemental strand, 52836609 - 52836511
Alignment:
Q  129 ctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaatcgtcg 228  Q
    |||||||||||||||   || |||||||||| ||||  || ||||||| ||||||||| ||||||||| ||| ||||||||||||||| |||||| ||||    
T  52836609 ctcttggatgtgttca--aaatacatccaaatctaaaataaaaatataagggcttaaggttgatcctttgtgtaatcctattgttatgagaaaattgtcg 52836512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 160
Target Start/End: Original strand, 13027303 - 13027352
Alignment:
Q  111 catacatatcggtgctagctcttggatgtgttctgtaagtacatccaaaa 160  Q
    ||||||| || |||||||||||||||||| ||||||||||||||||||||    
T  13027303 catacatctcagtgctagctcttggatgttttctgtaagtacatccaaaa 13027352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 8e-39; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 11593524 - 11593315
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| |||||| ||| | ||||| | |||||| |||| |||||| |||||||| || | || ||| ||||| | |||| ||||||||||| |    
T  11593524 catacgcttctaagacttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatct 11593425  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| ||||||||||||||| || | |||||||||||||||  || ||| ||| || |||| | |||| |||||||||||||||||||||||||||    
T  11593424 cggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtgcaatcctattgttatggga 11593325  T
Q  220 aaatcgtcgg 229  Q
    ||||| ||||    
T  11593324 aaatcttcgg 11593315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 33350517 - 33350726
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| | ||||| | |||||| |||| |||||| |||||||| || | || ||| ||||| | |||| ||||||||||| |    
T  33350517 catacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatct 33350616  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| ||||||||||||||| || | |||||||||||||||  || ||| ||| ||  ||| | |||| |||||||||||||||||||||||||||    
T  33350617 cggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggagttagggttgacccttggtgcaatcctattgttatggga 33350716  T
Q  220 aaatcgtcgg 229  Q
    ||||| ||||    
T  33350717 aaatcttcgg 33350726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 20 - 222
Target Start/End: Complemental strand, 36651565 - 36651363
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| | ||||| | |||||| |||| |||||| |||||||| || | || ||| ||||| | |||| ||||||||||| |    
T  36651565 catacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatct 36651466  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| ||||||||||||||| || | |||||| ||||||||  || ||| ||| || |||| | |||| |||||||||||||||||||||||||||    
T  36651465 cggtgctaactcttggatgtgttccgtcaatacatctaaaactaaagtaaaaagataaggacttagggttgacccttggtgcaatcctattgttatggga 36651366  T
Q  220 aaa 222  Q
    |||    
T  36651365 aaa 36651363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 39907090 - 39907294
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||| ||||||| || ||| ||| | ||||| | |||||| |||| |||||| |||||||| || | || ||| ||||| | |||| ||||||||||| |    
T  39907090 catatgcttctaagatttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatct 39907189  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| ||||||||||||||| || | |||||||||||||||  |  ||| ||| || |||| | |||| |||||||||||||||||||||||||||    
T  39907190 cggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtgaaaagataaggacttagggttgacccttggtgcaatcctattgttatggga 39907289  T
Q  220 aaatc 224  Q
    |||||    
T  39907290 aaatc 39907294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 46356562 - 46356766
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| | ||||| | | |||| |||| |||||| |||||||| || | || | | ||||| | |||| ||||||||||| |    
T  46356562 catacgcttctaaggcttgcctccaggtctctagcttcccgttcacttcctccctcgactcacccaccaaggctacatcatctgcaaaaagcatacatct 46356661  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| ||||||||||||||| || | |||||||||||||||  || ||| ||| || |||| | |||| |||||||||||||||||||||||||||    
T  46356662 cggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtgcaatcctattgttatggga 46356761  T
Q  220 aaatc 224  Q
    |||||    
T  46356762 aaatc 46356766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 164
Target Start/End: Original strand, 36870034 - 36870144
Alignment:
Q  54 cctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaagtaca 153  Q
    |||||| ||||||||||| |||||||| ||||||| ||| ||||| | |||| ||||||||||| ||||||||||||||||||||||||| || ||||||    
T  36870034 cctcccgttcaattcctccctcgactcaccaagcaagactacatcatctgcaaaaagcatacatctcggtgctagctcttggatgtgttccgtcagtaca 36870133  T
Q  154 tccaaaactaa 164  Q
    |||||||||||    
T  36870134 tccaaaactaa 36870144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 32630178 - 32629975
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| | ||||| | ||||| ||| || ||||| || ||||| || |||| ||| ||||| | |||| ||||||||||| |    
T  32630178 catacgcttctaaggcttgcctccaggtctctagcctcc-atttaactcctccctagactcacctagcaagactacatcatctgcaaaaagcatacatct 32630080  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| ||||||||||||||| || ||||||||||||||||   || ||| ||| || |||| | |||| |||||||||| ||||||||||||||||    
T  32630079 cggtgctaactcttggatgtgttccgttagtacatccaaaactagagtaaaaagataaggacttagggttgacccttggtgcagtcctattgttatggga 32629980  T
Q  220 aaatc 224  Q
    |||||    
T  32629979 aaatc 32629975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 35 - 229
Target Start/End: Complemental strand, 38897167 - 38896973
Alignment:
Q  35 cttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttg 134  Q
    |||| ||| ||||||| | |||||| |||| |||||| |||||||  |||| || ||| ||||| | |||| || | |||||| ||||||||| ||||||    
T  38897167 cttgcctccaagtctctagcctcccgttcacttcctccctcgactaaccaaccaagactacatcatctgcaaaatgaatacatctcggtgctaactcttg 38897068  T
Q  135 gatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaatcgtcgg 229  Q
    ||||||||| || | |||||||||||||||   | ||| ||| || |||| | |||| |||||||||||||||||||||||||||||||| ||||    
T  38897067 gatgtgttccgtcaatacatccaaaactaaagcaaaaagataaggacttagggttgacccttggtgcaatcctattgttatgggaaaatcttcgg 38896973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 102 - 229
Target Start/End: Complemental strand, 49028770 - 49028643
Alignment:
Q  102 tgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgc 201  Q
    |||| ||||||||||| | ||||||| ||||||||||||||| || | |||||||||||||||  || ||| ||| || |||| | |||| |||||||||    
T  49028770 tgcaaaaagcatacatcttggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtgc 49028671  T
Q  202 aatcctattgttatgggaaaatcgtcgg 229  Q
    ||||||||||||||||||||||| ||||    
T  49028670 aatcctattgttatgggaaaatcttcgg 49028643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 46 - 217
Target Start/End: Original strand, 43793769 - 43793941
Alignment:
Q  46 gtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaa-gcatacatatcggtgctagctcttggatgtgttct 144  Q
    ||||||||||||||||| ||||| ||  | ||||||||||| ||||| | ||| | |||| ||| |||||||| | |||||| ||||||||||||||| |    
T  43793769 gtctccaacctcccatttaattcttcctttgactctccaagtaggactatatcatttgcaaaaaagcatacatcttggtgctcgctcttggatgtgtttt 43793868  T
Q  145 gtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgg 217  Q
    |||||||||||||| |||||| |  ||| ||| |||||||   || | ||||||||||||| |||||||||||    
T  43793869 gtaagtacatccaacactaaggtgaaaagataagggcttagtgttcaaccttggtgcaatcttattgttatgg 43793941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 119 - 222
Target Start/End: Complemental strand, 20499581 - 20499478
Alignment:
Q  119 tcggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggg 218  Q
    ||||||||||||||||||||||||| | |||||||||||||| |||  || ||| ||| ||||||| | || | |||||||||||||||||||||||||     
T  20499581 tcggtgctagctcttggatgtgttccgcaagtacatccaaaagtaaagtaaaaagataagggcttatggttcaaccttggtgcaatcctattgttatgga 20499482  T
Q  219 aaaa 222  Q
    ||||    
T  20499481 aaaa 20499478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 21520172 - 21520288
Alignment:
Q  46 gtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctg 145  Q
    |||||||||||| ||||||| || |  ||||||||||||||||| || ||||| | |  | ||||||||||| ||||||||| ||||||||||||||| |    
T  21520172 gtctccaacctctcattcaactcattcctcgactctccaagcagaactacatcatat--aaaaagcatacatctcggtgctaactcttggatgtgttccg 21520269  T
Q  146 taagtacatccaaaactaa 164  Q
    ||| |||||||||||||||    
T  21520270 taaatacatccaaaactaa 21520288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 107 - 224
Target Start/End: Complemental strand, 38606522 - 38606405
Alignment:
Q  107 aaagcatacatatcggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcc 206  Q
    ||||||||||| | ||||||| |||||||||||||||||| |||||||||||||||||   | ||| ||| || || | | |||| |||||||||| |||    
T  38606522 aaagcatacatcttggtgctaactcttggatgtgttctgtcagtacatccaaaactaaagcaaaaagataaggactaagggttgacccttggtgcagtcc 38606423  T
Q  207 tattgttatgggaaaatc 224  Q
    ||||||||| | ||||||    
T  38606422 tattgttatcgaaaaatc 38606405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 48055627 - 48055732
Alignment:
Q  119 tcggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggg 218  Q
    |||||||||||||||||||||| || | | |||||||||||| |||  || ||| ||| ||||||| | || | |||||||||||||||||||||||||     
T  48055627 tcggtgctagctcttggatgtgctccgcaggtacatccaaaagtaaagtaaaaagataagggcttatggttcagccttggtgcaatcctattgttatgga 48055726  T
Q  219 aaaatc 224  Q
    ||||||    
T  48055727 aaaatc 48055732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 31004795 - 31004672
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| | ||||| | |||||| |||| |||||| |||||||| || | || ||| ||||| | |||| ||||||||||| |    
T  31004795 catacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatct 31004696  T
Q  120 cggtgctagctcttggatgtgttc 143  Q
    |||||||| |||||||||||||||    
T  31004695 cggtgctaactcttggatgtgttc 31004672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 23087824 - 23087970
Alignment:
Q  18 gtcatacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacat 117  Q
    ||||||| ||| || ||| | |||| ||||||||||| ||||||||||||||||  || |||| ||||  | ||| ||||| | |||| ||  |||||||    
T  23087824 gtcatacacttttaagacatctctccaagtctccaacatcccattcaattcctccgtcaactcgccaattaagactacatcatctgcaaaatacatacat 23087923  T
Q  118 atcggtgctagctcttggatgtgttctgtaagtacatccaaaactaa 164  Q
     || |||||| || ||||||||||| |||||||| ||||||||||||    
T  23087924 ctcagtgctatctgttggatgtgttttgtaagtatatccaaaactaa 23087970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 221
Target Start/End: Original strand, 24177953 - 24178107
Alignment:
Q  67 tcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaagtacatccaaaactaagt 166  Q
    ||||| |||||||| ||||||| ||| || || | |||| ||||||||||| ||||||||| |||||||  |||||| || |||||||||||||||||      
T  24177953 tcctccctcgactcaccaagcaagactacgtcatttgcaaaaagcatacatctcggtgctaactcttgggcgtgttccgtcagtacatccaaaactaaaa 24178052  T
Q  167 tagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaa 221  Q
    || ||| ||| |  |||| | |||| |||| ||||  |||||||||| |||||||    
T  24178053 taaaaagataagaacttagggttgacccttagtgcggtcctattgttgtgggaaa 24178107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 17101223 - 17101338
Alignment:
Q  46 gtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctg 145  Q
    |||||||||| |||||||||||||||| ||||||| ||||| | ||| | ||| | | || ||||| ||||| |||||||||||| |   | |||||||     
T  17101223 gtctccaaccacccattcaattcctctatcgactccccaagtaagactaaatcatcttcaaaaagcctacatctcggtgctagctat---aggtgttcta 17101319  T
Q  146 taagtacatccaaaactaa 164  Q
    | |||||||||||||||||    
T  17101320 ttagtacatccaaaactaa 17101338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 134
Target Start/End: Complemental strand, 37616487 - 37616373
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| | ||||| | |||||| |||| |||||| |||||||| || | || ||| ||||| | |||| ||||||||||| |    
T  37616487 catacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatct 37616388  T
Q  120 cggtgctagctcttg 134  Q
    |||||||| ||||||    
T  37616387 cggtgctaactcttg 37616373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 33572628 - 33572681
Alignment:
Q  18 gtcatacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctc 71  Q
    |||||||||||||| ||||||| || |||||||| || ||||||||||||||||    
T  33572628 gtcatacgcttctaagacttgtttccaagtctccgacatcccattcaattcctc 33572681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 188 - 223
Target Start/End: Original strand, 36870203 - 36870238
Alignment:
Q  188 ttgatccttggtgcaatcctattgttatgggaaaat 223  Q
    |||| |||||||||||||||||||||||||||||||    
T  36870203 ttgacccttggtgcaatcctattgttatgggaaaat 36870238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 22346844 - 22346811
Alignment:
Q  196 tggtgcaatcctattgttatgggaaaatcgtcgg 229  Q
    ||||||||||||||||||||||||||||| ||||    
T  22346844 tggtgcaatcctattgttatgggaaaatcttcgg 22346811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 1288300 - 1288509
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||||||| | ||||| |  ||||| |||| |||||| ||||| || || | || ||| ||||| | |||| ||||||||||| |    
T  1288300 catacgcttctaaggcttgtctccaggtctctagtctcccgttcacttcctccctcgaatcacccaccaagaccacatcatctgcaaaaagcatacatct 1288399  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| ||||||||||||||| || | |||||||||||||||  || ||||||| || |||| | |||| |||||||||||||||||||||||||||    
T  1288400 cggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaatataaggacttagggttgacccttggtgcaatcctattgttatggga 1288499  T
Q  220 aaatcgtcgg 229  Q
    ||||| ||||    
T  1288500 aaatcttcgg 1288509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 3394282 - 3394078
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| | ||||| | ||||||||| || ||||| |||||||| ||||||| |||  |||| | |||| ||||||||||| |    
T  3394282 catacgcttctaaggcttgcctccaggtctctagcctcccatttaactcctccctcgactcaccaagcaagactgcatcatctgcaaaaagcatacatct 3394183  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| ||||||||||||||| || ||||||||||||||||   || | | ||| || |||| | || | |||||||||||||||||||||||||||    
T  3394182 cggtgctaactcttggatgtgttccgtcagtacatccaaaactagagtaaagagataaggacttagggtttacccttggtgcaatcctattgttatggga 3394083  T
Q  220 aaatc 224  Q
    |||||    
T  3394082 aaatc 3394078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 1274836 - 1274627
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| | ||||| | ||||   |||| |||||| |||||||| || | || ||| ||||| | |||| ||||||||||| |    
T  1274836 catacgcttctaaggcttgcctccaggtctctagcctcatgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatct 1274737  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| ||||||||||||||| || | |||||||||||||||  || ||| ||| || |||| | |||| |||||||||||| ||||||||||||||    
T  1274736 cggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtgcaattctattgttatggga 1274637  T
Q  220 aaatcgtcgg 229  Q
    ||||| ||||    
T  1274636 aaatcttcgg 1274627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 2076185 - 2076394
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| |  |||| | |||||| |||| |||||| || ||||| || | || ||| ||||| | |||| ||||||||||| |    
T  2076185 catacgcttctaaggcttgcctccagctctctagcctcccgttcacttcctcccttgactcacccaccaagactacatcatctgcaaaaagcatacatct 2076284  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| ||||||||||||||| || | |||||||||||||||  || ||| ||| || |||| | |||| ||||||||||||||||||||| |||||    
T  2076285 cggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtgcaatcctattgttgtggga 2076384  T
Q  220 aaatcgtcgg 229  Q
    ||||| ||||    
T  2076385 aaatcttcgg 2076394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 20318562 - 20318353
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| | ||||| | |||||| |||| |||||| |||||||| || |  | ||| ||||| | |||| ||||||||||| |    
T  20318562 catacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccatgaagactacatcatctgcaaaaagcatacatct 20318463  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| |||||| |||||||  || | |||||||||||||||  || ||| ||| || |||| | |||| |||||||||||||||||||||||||||    
T  20318462 cggtgctaactcttgaatgtgtttcgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtgcaatcctattgttatggga 20318363  T
Q  220 aaatcgtcgg 229  Q
    ||||| ||||    
T  20318362 aaatcttcgg 20318353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 228
Target Start/End: Complemental strand, 27499 - 27294
Alignment:
Q  22 tacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcg 121  Q
    ||||||||||   ||||| || ||||||||||| |||||||||||||||| |||| |||||||| |||||| ||||| |   || ||| ||||||| |||    
T  27499 tacgcttctaacgcttgtatctaagtctccaacttcccattcaattcctccctcgtctctccaaacaggactacatcatcgacaaaaaacatacatctcg 27400  T
Q  122 gtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaa 221  Q
     ||||| ||||||||| || || | ||||||||||||||| ||  || |||  || | |||| || ||||||||| ||||||||||||||||| ||||||    
T  27399 ttgctaactcttggatatggtccgcaagtacatccaaaacaaaaataaaaaggtaagagctt-aggttgatccttcgtgcaatcctattgttacgggaaa 27301  T
Q  222 atcgtcg 228  Q
    |||||||    
T  27300 atcgtcg 27294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 43558543 - 43558661
Alignment:
Q  46 gtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctg 145  Q
    ||||||||| ||||||| |||||||| ||| |||||||||| ||||| ||||| | | || || ||||| || |||||| |||||||||||||||||| |    
T  43558543 gtctccaacatcccattaaattcctccctcaactctccaagaaggactacatcatctacaaaacgcatatatctcggtgttagctcttggatgtgttccg 43558642  T
Q  146 taagtacatccaaaactaa 164  Q
    |||||||||||||||||||    
T  43558643 taagtacatccaaaactaa 43558661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 12493107 - 12493276
Alignment:
Q  54 cctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaagtaca 153  Q
    |||||| |||| |||||| |||||||| || | || ||  ||||| | |||| ||||||||||| | ||||||| ||||||||||||||| || | ||||    
T  12493107 cctcccgttcacttcctccctcgactcacccaccaagattacatcatctgcaaaaagcatacatcttggtgctaactcttggatgtgttccgtcaataca 12493206  T
Q  154 tccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaat 223  Q
    |||||||||||  || ||| ||| ||  ||| | |||| |||||||||||||||||||||||||||||||    
T  12493207 tccaaaactaaagtaaaaagataaggagttagggttgacccttggtgcaatcctattgttatgggaaaat 12493276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 163
Target Start/End: Complemental strand, 3301420 - 3301277
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    ||||| |||||| | |||| ||| | ||||| | ||||||||| |||||||| ||| |||| ||||||| ||   |||| | |||| ||||||||||| |    
T  3301420 catactcttctaaggcttgcctccaggtctctagcctcccatttaattcctccctcaactcaccaagcaagattgcatcatctgcaaaaagcatacatct 3301321  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaacta 163  Q
    |||||||| |||||||||||||||||| ||||||||||||||||    
T  3301320 cggtgctaactcttggatgtgttctgtcagtacatccaaaacta 3301277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 54 - 229
Target Start/End: Complemental strand, 24178061 - 24177886
Alignment:
Q  54 cctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaagtaca 153  Q
    |||||| |||| |||||| |||||||| |  | || ||| ||||| | |||| ||||||||||| ||||||||| ||||||||||||||| || | ||||    
T  24178061 cctcccgttcacttcctccctcgactcactcaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaataca 24177962  T
Q  154 tccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaatcgtcgg 229  Q
    ||| |||||||  || ||| ||  || |||| | |||| ||||||||||||||||||||||| |||||||| ||||    
T  24177961 tcccaaactaaagtaaaaagattaggacttagggttgacccttggtgcaatcctattgttatcggaaaatcttcgg 24177886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 10638869 - 10638688
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| | ||||| | ||| || |||| |||||| |||||||| || | || ||| ||||| | |||| ||||||||||| |    
T  10638869 catacgcttctaaggcttgcctccaggtctctagcctaccgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatct 10638770  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgc 201  Q
    |||||||| ||||||||||||||| || | |||||||||||||||  || ||| ||| || |||| | |||| |||||||||    
T  10638769 cggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtgc 10638688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 34 - 229
Target Start/End: Original strand, 31502771 - 31502967
Alignment:
Q  34 acttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctag-ctct 132  Q
    ||||||||  |||||||||||||| |||||||||| ||| ||||||||||||| | ||| |  || | |||| ||||||| ||| | |||||| |  |||    
T  31502771 acttgtcttcaagtctccaacctcgcattcaattcttctttcgactctccaagtaagactatctcatctgcaaaaagcatgcatcttggtgctcgtttct 31502870  T
Q  133 tggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaatcgtcgg 229  Q
    ||||| |||| ||||||||||||||||| |||| |  ||| ||| || | ||   |||| ||||||| |||||||||||||| ||| ||||| ||||    
T  31502871 tggatttgttttgtaagtacatccaaaattaaggtgaaaagataaggacgtagtgttgaaccttggtacaatcctattgttaaggggaaatcttcgg 31502967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 222
Target Start/End: Complemental strand, 37124138 - 37123938
Alignment:
Q  22 tacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcg 121  Q
    |||||||||| |||||||||| || |||||||| || | |||||||| || || ||||||| || |||||| || || | | || ||||||||  | |||    
T  37124138 tacgcttctaagacttgtctccaattctccaacatctcgttcaattcgtcccttgactctcaaaacaggactacctcatctacaaaaagcatatgtctcg 37124039  T
Q  122 gtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaa 221  Q
     | |||||| ||| |||| |||| ||| |||||||||||||||  ||  || ||| ||||||| | ||||| ||||||| |||| |||||||||| ||||    
T  37124038 atactagctattgaatgtattctataaatacatccaaaactaaagtaagaagataagggcttatgattgattcttggtgtaatcttattgttatgagaaa 37123939  T
Q  222 a 222  Q
    |    
T  37123938 a 37123938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 3096739 - 3096625
Alignment:
Q  46 gtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctg 145  Q
    ||||||||||||||||| ||||| ||  ||||||||  ||| | ||| | ||| | |||| || |||||||| | |||||| ||| ||||||||||||||    
T  3096739 gtctccaacctcccatttaattcttccttcgactctttaagtatgactatatcatatgcaaaacgcatacatcttggtgctcgcttttggatgtgttctg 3096640  T
Q  146 taagtacatccaaaa 160  Q
    |||||||||||||||    
T  3096639 taagtacatccaaaa 3096625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 107 - 242
Target Start/End: Complemental strand, 40383940 - 40383805
Alignment:
Q  107 aaagcatacatatcggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcc 206  Q
    ||||||||||| || ||||||||||||| || |||| ||||||||||||||| |||||  || ||| |||  || ||||  |||||| ||||||| |||     
T  40383940 aaagcatacatctcagtgctagctcttgaatatgttatgtaagtacatccaagactaaagtaaaaagataatggtttaatgttgatcattggtgcgatca 40383841  T
Q  207 tattgttatgggaaaatcgtcggcgaccccatcttg 242  Q
    || |||||| | ||||||||||| | ||| ||||||    
T  40383840 taatgttattgaaaaatcgtcggtggccctatcttg 40383805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 28977650 - 28977712
Alignment:
Q  102 tgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaagtacatccaaaactaa 164  Q
    |||| ||||||||||| ||||||||| ||||||||||||||| || | |||||||||||||||    
T  28977650 tgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaa 28977712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 23979787 - 23979616
Alignment:
Q  33 gacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctct 132  Q
    |||||| ||| ||||||||||| |||||||||||||||  |||||||||||||  | ||| || |||    || ||  ||||||| |  ||  ||||| |    
T  23979787 gacttgactccaagtctccaacatcccattcaattcctgcctcgactctccaattaagactacttcta---caaaacccatacatcttagttatagctat 23979691  T
Q  133 tggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcct 207  Q
    |||||||||| ||||||||| |||||||||||  || ||| ||| ||| ||||| |||| ||||||| |||||||    
T  23979690 tggatgtgttttgtaagtacttccaaaactaatataaaaagataagggattaaggttgacccttggtccaatcct 23979616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 36565952 - 36566156
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| | ||||| | |||||| |||| |||||| |||||||| || | || ||| ||||| | |||| ||||||||||| |    
T  36565952 catacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatct 36566051  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| ||||||||||||||| || | |||||||||||||||  || ||| ||| || |||| | |||| |||||||||||||||||||||||||||    
T  36566052 cggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtgcaatcctattgttatggga 36566151  T
Q  220 aaatc 224  Q
    |||||    
T  36566152 aaatc 36566156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 42854724 - 42854928
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    ||||||||| || | |||| ||| | ||||| | ||||||||| || ||||| |||||||| ||||||| ||| ||||| | |||| ||||||||||| |    
T  42854724 catacgcttttaaggcttgcctccaggtctctagcctcccatttaactcctccctcgactcaccaagcaagactacatcatctgcaaaaagcatacatct 42854823  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| |||||||||||||||| | || ||||||||||||||  || ||| ||| || |||| | |||| |||||||||| |||||||||||| |||    
T  42854824 cggtgctaactcttggatgtgttctatcaggacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtgcagtcctattgttatagga 42854923  T
Q  220 aaatc 224  Q
    |||||    
T  42854924 aaatc 42854928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 111 - 224
Target Start/End: Original strand, 15216074 - 15216187
Alignment:
Q  111 catacatatcggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctatt 210  Q
    ||||||| ||||||||| |||||||||||||||||| |||||||||||||||||  || ||| ||| || |||| | ||||||||||||||| |||||||    
T  15216074 catacatctcggtgctaactcttggatgtgttctgtcagtacatccaaaactaaagtaaaaagataaggacttagggttgatccttggtgcagtcctatt 15216173  T
Q  211 gttatgggaaaatc 224  Q
    ||||||||||||||    
T  15216174 gttatgggaaaatc 15216187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 12492553 - 12492757
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||  ||| | ||||| | |||||  |||| |||||| |||||||| || | || ||| ||||| | |||| ||||||||||| |    
T  12492553 catacgcttctaaggcttacctccaggtctctagcctccagttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatct 12492652  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| ||||||||||||||| || | |||||||||||||||  || ||| ||| |  |||||| |||| ||||||||||||||||||||||||| |    
T  12492653 cggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataagaacttaagattgacccttggtgcaatcctattgttatggaa 12492752  T
Q  220 aaatc 224  Q
    |||||    
T  12492753 aaatc 12492757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 160
Target Start/End: Original strand, 30578937 - 30579079
Alignment:
Q  18 gtcatacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacat 117  Q
    |||||| ||||||| | |||||| | || | |||||||||| |||||||||||| ||||||||| |||| ||||| ||| | | | || |||||| ||||    
T  30578937 gtcataagcttctaaggcttgtccccaaatatccaacctccaattcaattcctccctcgactcttcaagaaggactacaccatcttcaaaaagcaaacat 30579036  T
Q  118 atcggtgctagctcttggatgtgttctgtaagtacatccaaaa 160  Q
     || ||||||||||||| |||||||||||||||||||| ||||    
T  30579037 ctcagtgctagctcttgtatgtgttctgtaagtacatcaaaaa 30579079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 36544723 - 36544514
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||| ||||| | |||| ||| | ||||| | |||||| |||| |||||| |||||||| || | || ||| ||||| | || | ||||||||||| |    
T  36544723 catacggttctaaggcttgcctctaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcatctgaaaaaagcatacatct 36544624  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    | |||||| ||||||||||||||   | | |||||||||||||||  || ||| ||| |  |||| | |||| |||||||||||||||||||||||||||    
T  36544623 cagtgctaactcttggatgtgttgcatcaatacatccaaaactaaagtaaaaagataagaacttagggttgacccttggtgcaatcctattgttatggga 36544524  T
Q  220 aaatcgtcgg 229  Q
    ||||| ||||    
T  36544523 aaatcttcgg 36544514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 28300813 - 28301002
Alignment:
Q  18 gtcatacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacat 117  Q
    ||||||| |||||| |||||||||| ||||||||||| || |||||||||||||  ||||||||||||  | ||| ||||| ||| || || ||||||||    
T  28300813 gtcatacccttctaagacttgtctccaagtctccaacatctcattcaattcctccatcgactctccaattaagactacatcatgtacaaaacgcatacat 28300912  T
Q  118 atcggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcct 207  Q
     | ||| |||| | || ||||  || |||||||||||| ||||||||  || ||| ||| ||| ||| | |||| ||||||| |||||||    
T  28300913 cttggttctagttgtttgatgctttttgtaagtacatctaaaactaatgtaaaaagataagggattagggttgacccttggtccaatcct 28301002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 224
Target Start/End: Original strand, 41445051 - 41445219
Alignment:
Q  57 cccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaagtacatcc 156  Q
    |||||| |||||||| |||||||||||||| ||||| ||||| | | || |||  | |||| |||||||||||| |||||||||||  |||| |||||||    
T  41445051 cccatttaattcctccctcgactctccaagtaggactacatcatctacaaaaaatagacatctcggtgctagcttttggatgtgtttcgtaattacatcc 41445150  T
Q  157 aaaact-aagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaatc 224  Q
    |||| | |||| |  || ||| ||||||| | || | ||||||| ||||| ||||||||||||||||||    
T  41445151 aaaattaaagtaaacaaaataagggcttagggttaacccttggtacaatcatattgttatgggaaaatc 41445219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 52 - 225
Target Start/End: Complemental strand, 13588979 - 13588806
Alignment:
Q  52 aacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaagta 151  Q
    ||||||||||||||||||||  ||||||||||||||| ||| ||||| |   || ||||||||||| | ||||| | ||||||||| ||||| ||||  |    
T  13588979 aacctcccattcaattcctccatcgactctccaagcaagactacatcatcaccaaaaagcatacatcttggtgcaaactcttggatatgttccgtaaaca 13588880  T
Q  152 catccaaaact-aagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaatcg 225  Q
     |||||||||| |||||  ||   ||  || ||| | |||| |||||||||||||||||||||||||||||||||    
T  13588879 tatccaaaactgaagtt-taagggtaatggattatggttgacccttggtgcaatcctattgttatgggaaaatcg 13588806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 164
Target Start/End: Complemental strand, 38667108 - 38666994
Alignment:
Q  50 ccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaag 149  Q
    ||||| |||||||||||||| || || |||||||||  | ||| || || | |||| |||  |||||| || ||||||||| ||||||||||| || |||    
T  38667108 ccaacgtcccattcaattcccctatccactctccaattaagactacttcatctgcaaaaaaaatacatttcagtgctagctattggatgtgttttgcaag 38667009  T
Q  150 tacatccaaaactaa 164  Q
    ||||| |||||||||    
T  38667008 tacattcaaaactaa 38666994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 3284938 - 3284861
Alignment:
Q  146 taagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaat 223  Q
    |||||||||||||||||||| |  ||| ||| |||||||   |||| |||||||||||| ||||||||||| ||||||    
T  3284938 taagtacatccaaaactaaggtgaaaagataagggcttagtgttgaaccttggtgcaatactattgttatgagaaaat 3284861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 71
Target Start/End: Original strand, 33830939 - 33830992
Alignment:
Q  18 gtcatacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctc 71  Q
    ||||||| |||||| |||||||||| |||||||| || ||||||||||||||||    
T  33830939 gtcatacacttctaagacttgtctccaagtctccgacatcccattcaattcctc 33830992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 25984946 - 25984910
Alignment:
Q  193 ccttggtgcaatcctattgttatgggaaaatcgtcgg 229  Q
    |||||||||||||||||||||||||||||||| ||||    
T  25984946 ccttggtgcaatcctattgttatgggaaaatcttcgg 25984910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 8e-36; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 25 - 229
Target Start/End: Complemental strand, 48221347 - 48221143
Alignment:
Q  25 gcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtg 124  Q
    ||||||| | |||||||| |||||| |||||||||||||||||||||||||||||||| | |||| || ||||| | |||| | ||  ||||| ||| ||    
T  48221347 gcttctaaggcttgtctccaagtcttcaacctcccattcaattcctctctcgactctcaatgcagaactacatcatatgcaaagagtgtacatctcgatg 48221248  T
Q  125 ctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaatc 224  Q
    ||| |||||||||||||| || ||||||||| ||||||||  || |||| ||||  | |||| ||| | |||||||||||||||||||||||| ||| ||    
T  48221247 ctaactcttggatgtgttttgcaagtacatctaaaactaaagtaaaaatttatgatcctaaggttggttcttggtgcaatcctattgttatggaaaattc 48221148  T
Q  225 gtcgg 229  Q
    |||||    
T  48221147 gtcgg 48221143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 51448420 - 51448629
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| |||||| ||| | ||||| | | |||| |||| |||||| ||| |||| || | || ||| ||||| | |||| ||||||||||| |    
T  51448420 catacgcttctaagacttgcctctaggtctctagcgtcccgttcacttcctccctcaactcacccaccaagactacatcatctgcaaaaagcatacatct 51448519  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    || ||||| ||||||||||||||| || | |||||||||||||||  || ||| ||| || |||| | |||| |||||||||||||||||||||||||||    
T  51448520 cgatgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtgcaatcctattgttatggga 51448619  T
Q  220 aaatcgtcgg 229  Q
    ||||| ||||    
T  51448620 aaatcttcgg 51448629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 52138399 - 52138190
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| | ||||| | |||||| |||  |||||| || ||||| || | || ||| ||||| |||| | ||||||||||| |    
T  52138399 catacgcttctaaggcttgcctccaggtctctagcctcccgttcccttcctcccttgactcacccaccaagactacatcatgtgtaaaaagcatacatct 52138300  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| ||||||||||||||| || | |||||||||||||||  || ||| ||| || |||| | ||||||||||||||||| ||||||||||||||    
T  52138299 cggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgatccttggtgcaattctattgttatggga 52138200  T
Q  220 aaatcgtcgg 229  Q
    ||||| ||||    
T  52138199 aaatcttcgg 52138190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 19757555 - 19757432
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||||||| ||||||| |||||||||||||||||||| ||| ||||||||||||||||  |||| | |||| ||||||||||| |    
T  19757555 catacgcttctaaggcttgtctccaagtctctaacctcccattcaattcctccctcaactctccaagcaggactgcatcatctgcaaaaagcatacatct 19757456  T
Q  120 cggtgctagctcttggatgtgttc 143  Q
     ||||||| |||||||||||||||    
T  19757455 tggtgctaactcttggatgtgttc 19757432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 143
Target Start/End: Complemental strand, 19736737 - 19736614
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    ||||| |||||| | |||||||| ||||||| || ||||||||||||||||| ||| ||||||||||||||||  |||| | |||| ||||||||||| |    
T  19736737 catacacttctaaggcttgtctctaagtctctaatctcccattcaattcctccctcaactctccaagcaggactgcatcatctgcaaaaagcatacatct 19736638  T
Q  120 cggtgctagctcttggatgtgttc 143  Q
     ||||||| |||||||||||||||    
T  19736637 tggtgctaactcttggatgtgttc 19736614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 224
Target Start/End: Complemental strand, 38849631 - 38849461
Alignment:
Q  54 cctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaagtaca 153  Q
    ||||| ||||||||||||  ||||||| ||||||| ||| ||||| | | || ||||||||||| ||||||||  |||||||| |||||| |   |||||    
T  38849631 cctcctattcaattcctccttcgactcaccaagcaagactacatcatctacaaaaagcatacatctcggtgcttactcttggacgtgttccgcccgtaca 38849532  T
Q  154 tccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaatc 224  Q
    ||||||||||| | | ||| ||| || ||||   |||| |||||||||||||||| |||||||| ||||||    
T  38849531 tccaaaactaaataaaaaagataaggacttacaattgacccttggtgcaatcctactgttatggaaaaatc 38849461  T

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Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 26 - 206
Target Start/End: Complemental strand, 29817070 - 29816890
Alignment:
Q  26 cttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgc 125  Q
    |||||| | |||||||| ||||||  || ||| | |||||||| || || ||||||||||| |||||   ||| | | || ||| ||||||| |||||||    
T  29817070 cttctaaggcttgtctctaagtctataagctcgcgttcaattcatcccttgactctccaagtaggactgtatcatcttcaaaaaacatacatctcggtgc 29816971  T
Q  126 tagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcc 206  Q
    || |||| ||||||||| |||||||||||||||| ||||| || |||  || ||||||| | |||| ||||||||||||||    
T  29816970 taactctaggatgtgttttgtaagtacatccaaacctaaggtaaaaaggtaagggcttagggttgagccttggtgcaatcc 29816890  T

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Target: chr3; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 47 - 223
Target Start/End: Original strand, 50630059 - 50630235
Alignment:
Q  47 tctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctgt 146  Q
    |||||||||||| ||| ||||||||  || |||||||||| || || | ||| | |||| ||| ||| ||  | ||||||||| ||||||||||||| ||    
T  50630059 tctccaacctcctatttaattcctccttcaactctccaagtagaactatatcgtttgcaaaaatcatgcaccttggtgctagcacttggatgtgttccgt 50630158  T
Q  147 aagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaat 223  Q
    ||||| ||||||||||||  || ||| ||| ||||||| | |||| |||||| | ||||||||| || |||||||||    
T  50630159 aagtaaatccaaaactaaagtaaaaagataagggcttagggttgaaccttggggtaatcctattattgtgggaaaat 50630235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 111 - 250
Target Start/End: Complemental strand, 9258366 - 9258227
Alignment:
Q  111 catacatatcggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctatt 210  Q
    ||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||  || ||| ||| || |||  | |||  | ||||||| ||||||||    
T  9258366 catacatctcggtgctaactcttggatgtgttccgtaagtacatccaaaactaaagtaaaaagataaggacttggggttgtccattggtgccatcctatt 9258267  T
Q  211 gttatgggaaaatcgtcggcgaccccatcttgtgtactca 250  Q
    ||| |||||||||  ||||  |||||||| ||||| ||||    
T  9258266 gttgtgggaaaatattcggtaaccccatcatgtgtcctca 9258227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 25190916 - 25190827
Alignment:
Q  54 cctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttc 143  Q
    ||||||||| || ||||| |||||||| ||||||| ||| ||||| | |||| ||||||||||| ||||||||| |||||||||||||||    
T  25190916 cctcccatttaactcctccctcgactcaccaagcaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttc 25190827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 223
Target Start/End: Complemental strand, 27917145 - 27916939
Alignment:
Q  18 gtcatacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacga-catcttgtgcacaaagcataca 116  Q
    ||||||||||| || | |||||||  ||||||  |||||| ||||||||||||| ||||  |||| ||||||||| | |||| | | || ||  ||||||    
T  27917145 gtcatacgcttataaggcttgtcttcaagtctttaacctctcattcaattcctccctcgtgtctctaagcaggactaacatcatcttcaaaactcataca 27917046  T
Q  117 tatcggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatg 216  Q
    | ||||| ||| || |||||||| |  |  ||||||| | ||||||||  || |||| || ||||||| |  ||| ||||||||||||||||||||||||    
T  27917045 tctcggtactaacttttggatgtttattagaagtacaactaaaactaaagtaaaaatgtaagggcttatggatgacccttggtgcaatcctattgttatg 27916946  T
Q  217 ggaaaat 223  Q
    || ||||    
T  27916945 gggaaat 27916939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 100
Target Start/End: Original strand, 26592148 - 26592227
Alignment:
Q  21 atacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatctt 100  Q
    |||| |||||| | |||||||||||||||| ||| ||  ||| |||||||| ||||||||||||| || ||| |||||||    
T  26592148 atacacttctaaggcttgtctcaaagtctctaacttcttatttaattcctccctcgactctccaaccatgactacatctt 26592227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 805466 - 805376
Alignment:
Q  76 gactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaagtacatccaaaactaagt 166  Q
    ||||||||||| |||||   ||| | |||| |||| |||||| | || ||| |||||||||||||||| ||||| |||||| |||||||||    
T  805466 gactctccaagtaggaccgtatcatatgcaaaaagtatacatcttggcgcttgctcttggatgtgttccgtaagcacatcccaaactaagt 805376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 8e-36; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 45368336 - 45368540
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| | ||||| | ||||||||| || ||||| |||||||| ||||||| ||| ||||| | |||| ||||||||||| |    
T  45368336 catacgcttctaaggcttgcctccaggtctctagcctcccatttaactcctccctcgactcaccaagcaagactacatcatctgcaaaaagcatacatct 45368435  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    ||||||||  |||||||||||||| || | |||||||||||||||  || ||| ||| || |||| | |||| |||||||||| ||||||||||||||||    
T  45368436 cggtgctaattcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtgcagtcctattgttatggga 45368535  T
Q  220 aaatc 224  Q
    |||||    
T  45368536 aaatc 45368540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 54 - 229
Target Start/End: Original strand, 24584351 - 24584526
Alignment:
Q  54 cctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaagtaca 153  Q
    |||||| ||||||||||| || ||||| ||||||| ||| ||||| | |||| ||| ||||||| |||||| || ||||||||||||||| || ||||||    
T  24584351 cctcccgttcaattcctcccttgactcaccaagcaagactacatcatctgcaaaaaacatacatctcggtgataactcttggatgtgttccgttagtaca 24584450  T
Q  154 tccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaatcgtcgg 229  Q
    |||||||||||  || ||| ||| || |||| | |||| |||||||||||||||||||||||||||||||| ||||    
T  24584451 tccaaaactaaagtaaaaagataaggacttagggttgacccttggtgcaatcctattgttatgggaaaatcttcgg 24584526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 2610099 - 2609895
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| | || || | |||||| |||| |||||| |||||||| || | || ||| ||||| | |||| ||||||||||| |    
T  2610099 catacgcttctaaggcttgcctccaggtttctagcctcccgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatct 2610000  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| ||||||||||||||| || | |||||||||||||||  || ||| ||| || |||| | |||| |||||||||||||||||||||||||||    
T  2609999 cggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtgcaatcctattgttatggga 2609900  T
Q  220 aaatc 224  Q
    |||||    
T  2609899 aaatc 2609895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 452327 - 452536
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| | ||||| | |||||| |||| |||||| ||| |||| || | || ||| ||||| | || | ||||||||||| |    
T  452327 catacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcaactcacccaccaagactacatcatctgtaaaaagcatacatct 452426  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| ||||||||||||||| || | |||||||||||||||  || ||| ||| || |||| | |||| |||||||||||||||||||||||||||    
T  452427 cggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtgcaatcctattgttatggga 452526  T
Q  220 aaatcgtcgg 229  Q
    ||||| ||||    
T  452527 aaatcttcgg 452536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 54 - 229
Target Start/End: Complemental strand, 8180332 - 8180157
Alignment:
Q  54 cctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaagtaca 153  Q
    |||||| |||| |||||| |||||||| || | || ||| ||||| | |||| ||||||||||| ||||||||| ||||||||||||||  || | ||||    
T  8180332 cctcccgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgtttcgtcaataca 8180233  T
Q  154 tccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaatcgtcgg 229  Q
    |||||||||||  || ||| ||| || |||| | |||| |||||| ||||||||||||||||||||||||| ||||    
T  8180232 tccaaaactaaagtaaaaagataaggacttatggttgacccttggcgcaatcctattgttatgggaaaatcttcgg 8180157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 26 - 221
Target Start/End: Complemental strand, 14769864 - 14769668
Alignment:
Q  26 cttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgc 125  Q
    |||||| | |||||||  |||||||||||||| |||| ||||| || |||||||||||||||| ||| ||||| |    | ||| ||||||||| |||||    
T  14769864 cttctaaggcttgtcttcaagtctccaacctctcattgaattcgtccctcgactctccaagcatgactacatcatcgcaaaaaaacatacatattggtgc 14769765  T
Q  126 tagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatata-tgggcttaagtttgatccttggtgcaatcctattgttatgggaaa 221  Q
    ||||||||| ||||||  ||||||||||||||||| |||  || ||| |||  ||||||| | |||| ||||||||||||| ||||||| |||||||    
T  14769764 tagctcttgaatgtgtgatgtaagtacatccaaaattaaagtaaaaagatacagggcttagggttgacccttggtgcaatcatattgttttgggaaa 14769668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 108 - 224
Target Start/End: Complemental strand, 876637 - 876521
Alignment:
Q  108 aagcatacatatcggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcct 207  Q
    |||||||||| | |||||| |||||||||||||||| ||||||||||||||||| ||| |  ||| ||| |||||||   |||| |||||||||||||||    
T  876637 aagcatacatcttggtgctcgctcttggatgtgttccgtaagtacatccaaaacgaaggtgaaaagataagggcttagtgttgaaccttggtgcaatcct 876538  T
Q  208 attgttatgggaaaatc 224  Q
     ||||||||||||||||    
T  876537 gttgttatgggaaaatc 876521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 45 - 229
Target Start/End: Original strand, 38453354 - 38453538
Alignment:
Q  45 agtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttct 144  Q
    |||||| | |||||| |||| |||||| |||||||| || | || ||| ||||| | |||| ||  ||||||| ||||||||| |||||||||||||| |    
T  38453354 agtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaatacatacatctcggtgctaactcttggatgtgtttt 38453453  T
Q  145 gtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaatcgtcgg 229  Q
    || | |||||||||||||||  || | | ||  || |||| | |||| |||||||||||||||||||||||||||||||| ||||    
T  38453454 gtcaatacatccaaaactaaagtaaagagatgaggacttagggttgacccttggtgcaatcctattgttatgggaaaatcttcgg 38453538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 47 - 164
Target Start/End: Complemental strand, 13148866 - 13148749
Alignment:
Q  47 tctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctgt 146  Q
    |||| |||||||||||||||| |||  |||||||||||||| | ||  |||| | | || || |||||||| |  |||||||||||||||||||||||||    
T  13148866 tctctaacctcccattcaatttctcattcgactctccaagcggaactgcatcatctacaaaatgcatacatcttagtgctagctcttggatgtgttctgt 13148767  T
Q  147 aagtacatccaaaactaa 164  Q
    ||||||||||||||||||    
T  13148766 aagtacatccaaaactaa 13148749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 164
Target Start/End: Original strand, 12475132 - 12475276
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| | ||||| | |||||| |||| |||||| |||||||| || | || ||| ||||| | |||| ||||||||||| |    
T  12475132 catacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatct 12475231  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaa 164  Q
    |||||||| ||||||||||||||| || | |||||||||||||||    
T  12475232 cggtgctaactcttggatgtgttccgtcaatacatccaaaactaa 12475276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 207
Target Start/End: Original strand, 7135438 - 7135569
Alignment:
Q  76 gactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatat 175  Q
    |||||| |||||||||| ||||| | |||| || |||||||| ||  || |||||||||| ||||||  |||||||||||||||| |||  || || |||    
T  7135438 gactctacaagcaggactacatcatttgcaaaatgcatacatctcaatggtagctcttggttgtgtttggtaagtacatccaaaattaaagtaaaactat 7135537  T
Q  176 atgggcttaagtttgatccttggtgcaatcct 207  Q
    | ||||||||  ||| |||||| |||||||||    
T  7135538 aagggcttaaaattggtccttgatgcaatcct 7135569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 223
Target Start/End: Complemental strand, 16292175 - 16292081
Alignment:
Q  129 ctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaat 223  Q
    ||||||||||||||| || | |||||||||||||||  || ||| ||| || |||| | |||| ||||| |||||||||| ||||||||||||||    
T  16292175 ctcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttgatgcaatcctaatgttatgggaaaat 16292081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 36 - 148
Target Start/End: Complemental strand, 7292548 - 7292436
Alignment:
Q  36 ttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttgg 135  Q
    ||||||| |||||| |||||||||||| ||||| || ||||||||||||| ||||||    || | |||| ||| ||||||| | | |||| ||||||||    
T  7292548 ttgtctccaagtcttcaacctcccatttaattcttccctcgactctccaaacaggactctgtcatatgcaaaaatcatacatcttgatgctcgctcttgg 7292449  T
Q  136 atgtgttctgtaa 148  Q
    |||||||| ||||    
T  7292448 atgtgttccgtaa 7292436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 41763760 - 41763865
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||| ||| | |||| ||| | ||||| | ||||||||| || ||||| |||||||| ||||||| ||| ||||| | |||| ||||||||||| |    
T  41763760 catacgctactaaggcttgcctccaggtctctagcctcccatttaactcctccctcgactcaccaagcaagactacatcatctgcaaaaagcatacatct 41763859  T
Q  120 cggtgc 125  Q
    ||||||    
T  41763860 cggtgc 41763865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 193 - 229
Target Start/End: Complemental strand, 6465151 - 6465115
Alignment:
Q  193 ccttggtgcaatcctattgttatgggaaaatcgtcgg 229  Q
    |||||||||||||||||||||||||| ||||||||||    
T  6465151 ccttggtgcaatcctattgttatggggaaatcgtcgg 6465115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 12904366 - 12904333
Alignment:
Q  195 ttggtgcaatcctattgttatgggaaaatcgtcg 228  Q
    |||||||||||||||||||||| |||||||||||    
T  12904366 ttggtgcaatcctattgttatgtgaaaatcgtcg 12904333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 34502173 - 34502214
Alignment:
Q  188 ttgatccttggtgcaatcctattgttatgggaaaatcgtcgg 229  Q
    ||||| ||||||| ||||||||||||||| ||||||||||||    
T  34502173 ttgatacttggtgtaatcctattgttatgagaaaatcgtcgg 34502214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 36038777 - 36038713
Alignment:
Q  34 acttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatc 98  Q
    |||||||||||||||| | || || |||||||||  ||  ||||||||||||||||||| |||||    
T  36038777 acttgtctcaaagtcttcgacatcgcattcaattaatccatcgactctccaagcaggacaacatc 36038713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 5258861 - 5259063
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| | ||||| | ||||||||| || ||||| |||||||| ||||||| |||  |||| | |||| ||||||||||| |    
T  5258861 catacgcttctaaggcttgcctccaggtctctagcctcccatttaactcctccctcgactcaccaagcaagacttcatcatctgcaaaaagcatacatct 5258960  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaact-aagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggg 218  Q
    |||||||| ||||||||||||||| || ||||||||||||||| |||| | ||| ||| || |||| | || | ||||||||||||||||||||||||||    
T  5258961 cggtgctaactcttggatgtgttccgtcagtacatccaaaactaaagtaaaaaagataaggacttagggtttacccttggtgcaatcctattgttatggg 5259060  T
Q  219 aaa 221  Q
    |||    
T  5259061 aaa 5259063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 2208114 - 2208319
Alignment:
Q  21 atacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaag-catacatat 119  Q
    |||||| |||| |||| ||||| ||||||| ||||| |||||||||||||| ||||| | |||||||| ||| ||||| | ||| ||||| | ||||| |    
T  2208114 atacgcatctaagactagtctccaagtctctaaccttccattcaattcctccctcgattttccaagcaagactacatcatttgc-caaagtcgtacatct 2208212  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
     ||||||| ||||||||||||||| ||||||||||||||||||||  || |||  || ||||||| | |||| ||||||||||||| ||||| ||||| |    
T  2208213 tggtgctaactcttggatgtgttccgtaagtacatccaaaactaaagtaaaaaggtaagggcttaggattgacccttggtgcaatcatattgatatggaa 2208312  T
Q  220 aaatcgt 226  Q
    |||||||    
T  2208313 aaatcgt 2208319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 30670459 - 30670255
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    ||||||||| || | |||| ||| | ||||| |||||||| ||||||||||| |||||||| ||||||| ||| ||||| | |||| ||||||||||| |    
T  30670459 catacgcttataaggcttgcctctaggtctctaacctcccgttcaattcctccctcgactcaccaagcaagactacatcatctgcaaaaagcatacatct 30670360  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |  ||||| ||||||||||| ||| || |||||| ||||||||||  || ||| | | ||  ||| | |||| ||||||||||||| |||||||||||||    
T  30670359 caatgctaactcttggatgtattccgtcagtacacccaaaactaaagtaaaaagacaaggatttatggttgacccttggtgcaatcttattgttatggga 30670260  T
Q  220 aaatc 224  Q
    |||||    
T  30670259 aaatc 30670255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 224
Target Start/End: Complemental strand, 9706347 - 9706142
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgc-acaaagcatacata 118  Q
    ||||| |||||| | |||| ||| | ||||| | ||||||||| || | ||| |||||||| ||||||| ||| ||||| | ||  | ||||||||||      
T  9706347 catactcttctaaggcttgcctccaggtctctagcctcccatttaacttctccctcgactcaccaagcaagactacatcatttgggaaaaagcatacaac 9706248  T
Q  119 tcggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggg 218  Q
    ||||||||| ||||||||||||||  || |||||||||||||||||  || ||| ||| || |||||| |||| |||||||||| || ||||||||||||    
T  9706247 tcggtgctaactcttggatgtgtttcgtcagtacatccaaaactaaagtaaaaagataaggacttaaggttgacccttggtgcagtcatattgttatggg 9706148  T
Q  219 aaaatc 224  Q
    ||||||    
T  9706147 aaaatc 9706142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 20428382 - 20428551
Alignment:
Q  54 cctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaagtaca 153  Q
    ||||||||| || ||||| || ||||| ||||||| ||| ||||| | |||| ||||||||||| ||||||||| |||||| |||||||| |||||||||    
T  20428382 cctcccatttaactcctcccttgactcaccaagcaagactacatcatctgcaaaaagcatacatctcggtgctaactcttgaatgtgttccgtaagtaca 20428481  T
Q  154 tccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaat 223  Q
    |||||| ||||  ||  || |||    |||| | |||| |||||||||| ||||||||||||||||||||    
T  20428482 tccaaagctaaagtaataagataaaaacttagggttgacccttggtgcagtcctattgttatgggaaaat 20428551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 130 - 242
Target Start/End: Complemental strand, 3629691 - 3629579
Alignment:
Q  130 tcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaatcgtcgg 229  Q
    ||||| ||||||||  |||||||||||||||||||  || ||| ||| ||||||||| |||| |||| ||||||||||||||||||||||||||||||||    
T  3629691 tcttgaatgtgttccataagtacatccaaaactaaagtaaaaagataagggcttaaggttgacccttagtgcaatcctattgttatgggaaaatcgtcgg 3629592  T
Q  230 cgaccccatcttg 242  Q
      |||| ||||||    
T  3629591 taaccctatcttg 3629579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 102 - 229
Target Start/End: Complemental strand, 6082889 - 6082762
Alignment:
Q  102 tgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgc 201  Q
    |||| ||||||||||| ||||||||| ||||||||||||||| || | |||||||||||||||  || ||| ||| |  |||| | |||| |||||||||    
T  6082889 tgcaaaaagcatacatctcggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataagaacttagggttgacccttggtgc 6082790  T
Q  202 aatcctattgttatgggaaaatcgtcgg 229  Q
    ||||||||||||| | ||||||| ||||    
T  6082789 aatcctattgttacgagaaaatcttcgg 6082762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 160
Target Start/End: Complemental strand, 26291354 - 26291212
Alignment:
Q  19 tcatacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtg-cacaaagcatacat 117  Q
    ||||||||||||| ||||| | || |||||   |||||||||| ||||||||| ||||||| |||||||||||| ||||| | ||  | |||||||||||    
T  26291354 tcatacgcttctaagacttctatccaagtcattaacctcccatgcaattcctccctcgactttccaagcaggactacatcatctgtaaaaaagcatacat 26291255  T
Q  118 atcggtgctagctcttggatgtgttctgtaagtacatccaaaa 160  Q
      ||||| || ||||||||||||||| |||| |||||||||||    
T  26291254 cacggtgttaactcttggatgtgttccgtaaatacatccaaaa 26291212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 226
Target Start/End: Complemental strand, 27790712 - 27790521
Alignment:
Q  35 cttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttg 134  Q
    ||||| ||||||| || |||||||||||||||||||| |||||| |||||| || ||| ||||| | ||   ||||||||||| | | ||||| || |||    
T  27790712 cttgtatcaaagtatctaacctcccattcaattcctccctcgacactccaaacatgactacatcatatgtgaaaagcatacatcttgatgctaacttttg 27790613  T
Q  135 gatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaatcgt 226  Q
    ||||||||   ||||| ||| |||||||||  || |||  || ||| ||| | |||| |||||||  |||||| ||||||||||||||||||    
T  27790612 gatgtgtttcataagtgcattcaaaactaaagtaaaaaggtaagggtttagggttgacccttggtataatccttttgttatgggaaaatcgt 27790521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 164
Target Start/End: Complemental strand, 5631362 - 5631244
Alignment:
Q  46 gtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctg 145  Q
    ||||||| ||||||||| || ||||| |||||||| ||||| | ||| | ||| | |||| ||| ||| ||| ||||||||| ||||||||||||||| |    
T  5631362 gtctccagcctcccatttaactcctccctcgactcaccaagaaagactagatcatatgcaaaaaacatgcatctcggtgctaactcttggatgtgttccg 5631263  T
Q  146 taagtacatccaaaactaa 164  Q
    | |||||||||||||||||    
T  5631262 tcagtacatccaaaactaa 5631244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 164
Target Start/End: Original strand, 2680760 - 2680905
Alignment:
Q  19 tcatacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacata 118  Q
    ||||||||||||| | |||||||| ||||||| | | |||| |||| |||||| ||||||||  |||||| ||| || || |  ||| || | ||||||     
T  2680760 tcatacgcttctaaggcttgtctccaagtctctagcatcccgttcagttcctcactcgactcatcaagcaagactacgtcatccgcaaaatgtatacatc 2680859  T
Q  119 tcggtgctagctcttggatgtgttctgtaagtacatccaaaactaa 164  Q
    ||| ||||| | |||||||||||| |||||||||||||||||||||    
T  2680860 tcgatgctaacacttggatgtgttatgtaagtacatccaaaactaa 2680905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 164
Target Start/End: Complemental strand, 33495754 - 33495634
Alignment:
Q  44 aagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttc 143  Q
    ||||||| | |||||  ||||||||||| ||| |||| ||||||| ||| ||||| | |||| ||||||||||| ||| |||||  ||||||||||||||    
T  33495754 aagtctctagcctcctgttcaattcctccctcaactcaccaagcaagactacatcatatgcaaaaagcatacatctcgatgctaaatcttggatgtgttc 33495655  T
Q  144 tgtaagtacatccaaaactaa 164  Q
     || ||||||| |||||||||    
T  33495654 cgtcagtacattcaaaactaa 33495634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 86
Target Start/End: Complemental strand, 7079688 - 7079646
Alignment:
Q  44 aagtctccaacctcccattcaattcctctctcgactctccaag 86  Q
    ||||||||||||||||||| ||||| || ||||||||||||||    
T  7079688 aagtctccaacctcccatttaattcgtcgctcgactctccaag 7079646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 165
Target Start/End: Original strand, 9369203 - 9369257
Alignment:
Q  111 catacatatcggtgctagctcttggatgtgttctgtaagtacatccaaaactaag 165  Q
    ||||||| | |||||| ||| |||||||||||  |||||||||||||||||||||    
T  9369203 catacatcttggtgctcgcttttggatgtgtttcgtaagtacatccaaaactaag 9369257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 2e-33; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 35 - 227
Target Start/End: Original strand, 10776145 - 10776337
Alignment:
Q  35 cttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttg 134  Q
    |||||||| |||| ||| |||||||||| ||||||||||||||||||||| | ||||| | ||| | |||| ||||||||||| | ||||   |||||||    
T  10776145 cttgtctccaagtgtcctacctcccatttaattcctctctcgactctccatgtaggactatatcatctgcaaaaagcatacatcttggtgtccgctcttg 10776244  T
Q  135 gatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaatcgtc 227  Q
     |||||||| ||||||||||||||||||||  |  ||| ||| ||||||    |||| |||||||||||||||||||| ||||||||||||||    
T  10776245 aatgtgttccgtaagtacatccaaaactaaaatgaaaagataagggcttggtgttgaaccttggtgcaatcctattgtcatgggaaaatcgtc 10776337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 223
Target Start/End: Original strand, 1212052 - 1212221
Alignment:
Q  54 cctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaagtaca 153  Q
    |||||| ||||||| ||| |||||||| |||| || ||| ||||| | | || ||||||||||| ||||||||| ||||| |||||||| ||||||||||    
T  1212052 cctcccgttcaatttctccctcgactcgccaatcaagactacatcatctccaaaaagcatacatctcggtgctaactcttagatgtgttatgtaagtaca 1212151  T
Q  154 tccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaat 223  Q
    |||||||||||  |  ||| ||| || |||| | |||| |||||||||||||||||||||||||||||||    
T  1212152 tccaaaactaaagtgaaaagataaggacttagggttgaaccttggtgcaatcctattgttatgggaaaat 1212221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 435800 - 435594
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| | ||||| | |||||| |||| |||||| |||||||| || | || ||| ||||||   ||| ||||||||||| |    
T  435800 catacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatct---gcaaaaagcatacatct 435704  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| ||||||||||||||| || | |||||||||||||||  || ||| ||| || |||| | |||| |||||||||| ||||||||||||||||    
T  435703 cggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtgcactcctattgttatggga 435604  T
Q  220 aaatcgtcgg 229  Q
    ||||| ||||    
T  435603 aaatcttcgg 435594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 73 - 224
Target Start/End: Complemental strand, 39707980 - 39707829
Alignment:
Q  73 ctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaa 172  Q
    |||||||| |||| || ||| ||||| | |||| ||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||  || |||    
T  39707980 ctcgactcaccaaacaagactacatcatctgcaaaaaacatacatatcggtgcaaactcttggatgtgttctgtaagtacatccaaaactaaagtaaaaa 39707881  T
Q  173 tatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaatc 224  Q
     ||| || |||| | || | |||| |||||||||||||||||||||||||||    
T  39707880 gataaggacttagggttaacccttagtgcaatcctattgttatgggaaaatc 39707829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 1777726 - 1777935
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| |  ||| ||| | ||||| | |||||| |||| |||||| |||||||| || | || ||| ||||| | |||| ||||||||||| |    
T  1777726 catacgcttctaaggtttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcatctgcataaagcatacatct 1777825  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaa-gttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggg 218  Q
    |||||||| ||||||||||||||| || | ||||||||||||||| |||| ||| ||| ||  ||| | |||| ||||||||||||||||||||||||||    
T  1777826 cggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtta-aaagataaggatttagggttgacccttggtgcaatcctattgttatggg 1777924  T
Q  219 aaaatcgtcgg 229  Q
    |||||| ||||    
T  1777925 aaaatcttcgg 1777935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 229
Target Start/End: Original strand, 23907012 - 23907222
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgt-gcacaaagcatacata 118  Q
    |||||||||||| | |||| ||| | ||||| | |||||| |||| |||||  |||||||| || | || ||| ||||| | | ||| |||||||||||     
T  23907012 catacgcttctaaggcttgcctccaggtctctagcctcccgttcacttccttcctcgactcacccaccaagactacatcatcttgcaaaaagcatacatc 23907111  T
Q  119 tcggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggg 218  Q
    ||||||||| ||||||| ||||||| || | |||||||||||||||  || ||| ||| || |||| | |||| ||||||||||||||||||||||||||    
T  23907112 tcggtgctaactcttggttgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtgcaatcctattgttatggg 23907211  T
Q  219 aaaatcgtcgg 229  Q
    |||||| ||||    
T  23907212 aaaatcttcgg 23907222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 224
Target Start/End: Original strand, 27450884 - 27451088
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| | ||||| | |||||||||  | ||||| |||||||| ||||||| ||| ||||| |  ||| ||||||||||| |    
T  27450884 catacgcttctaaggcttgcctcgaggtctctagcctcccatttgactcctccctcgactcaccaagcaagactacatcatcggcaaaaagcatacatct 27450983  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    ||||| || ||||||||||||||  || |||||||||||||||||  || ||| | | || |||| | |||| |||||||||| | ||||||||||||||    
T  27450984 cggtgttaactcttggatgtgtttcgttagtacatccaaaactaaagtaaaaagagaaggacttagggttgacccttggtgcagttctattgttatggga 27451083  T
Q  220 aaatc 224  Q
    |||||    
T  27451084 aaatc 27451088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 16002485 - 16002350
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||||||| | ||||| | |||||| ||||||||||| ||| |||| ||||||| ||| || || | |||| ||| ||||||| |    
T  16002485 catacgcttctaaggcttgtctctaggtctctagcctcccgttcaattcctccctcaactcaccaagcaagactacgtcatatgcaaaaaacatacatct 16002386  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatc 155  Q
    |||||||| ||||||||||||||| |||||||||||    
T  16002385 cggtgctaactcttggatgtgttccgtaagtacatc 16002350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 162
Target Start/End: Original strand, 35556047 - 35556173
Alignment:
Q  35 cttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttg 134  Q
    |||||||| ||| ||||||||||||||| ||| | ||  ||||||||||||| ||||| | ||| | | || ||||||||||| | |||||| |||||||    
T  35556047 cttgtctccaagactccaacctcccatttaatccttccttcgactctccaagtaggactatatcatctacaaaaagcatacattt-ggtgctcgctcttg 35556145  T
Q  135 gatgtgttctgtaagtacatccaaaact 162  Q
    || |||||||||||||||||||||||||    
T  35556146 gaggtgttctgtaagtacatccaaaact 35556173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 53707365 - 53707237
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    |||||||||||| | |||| ||| | ||||| | |||||| |||| |||||| |||||||| || | || ||| ||||| | |||| ||||||||||| |    
T  53707365 catacgcttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatct 53707266  T
Q  120 cggtgctagctcttggatgtgttctgtaa 148  Q
    |||||||| ||||||||||||||||||||    
T  53707265 cggtgctaactcttggatgtgttctgtaa 53707237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 229
Target Start/End: Original strand, 48623272 - 48623447
Alignment:
Q  54 cctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaagtaca 153  Q
    |||||| |||| |||||| ||||||||  | | || ||| ||||| | |||| ||||||||||| ||||||||| ||||||||||||||  || | ||||    
T  48623272 cctcccgttcacttcctccctcgactcatccaccaagactacatcatctgcaaaaagcatacatctcggtgctaactcttggatgtgttacgtcaataca 48623371  T
Q  154 tccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaatcgtcgg 229  Q
    |||||||||||  || ||| ||| |  |||| | |||| ||||||||||||||||||| || | ||||||| ||||    
T  48623372 tccaaaactaaagtaaaaagataagaacttagggttgaaccttggtgcaatcctattgataagagaaaatcttcgg 48623447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 223
Target Start/End: Original strand, 55769111 - 55769297
Alignment:
Q  44 aagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgc-acaaagcatacatatcggtgctagctcttggatgtgtt 142  Q
    |||||||||| ||||||||||||||||||||||| ||||||| |||||| ||||  | ||| | |||||||| |  |||| | ||| |||||||||||||    
T  55769111 aagtctccaatctcccattcaattcctctctcgaatctccaaacaggactacattatctgcaaaaaagcatagaactcggagttaggtcttggatgtgtt 55769210  T
Q  143 ctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttg------atccttggtgcaatcctattgttatgggaaaat 223  Q
    |  ||| |||||||||||||||  || ||| ||| ||| | | | |||      | |||||||||||||||||||||||||||||||    
T  55769211 ccataaatacatccaaaactaaagtaaaaagataagggttcagggttgacaccaacccttggtgcaatcctattgttatgggaaaat 55769297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 49 - 164
Target Start/End: Original strand, 17666765 - 17666880
Alignment:
Q  49 tccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaa 148  Q
    |||||| ||| |||||||||||  |||||| ||||||  | ||| ||||| | | || || |||||||| |||||||||| | ||||||||||| |||||    
T  17666765 tccaacatccaattcaattccttcctcgacactccaattaagactacatcatattcaaaatgcatacatctcggtgctagttgttggatgtgttatgtaa 17666864  T
Q  149 gtacatccaaaactaa 164  Q
    ||||||||||||||||    
T  17666865 gtacatccaaaactaa 17666880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 161
Target Start/End: Original strand, 17668032 - 17668175
Alignment:
Q  18 gtcatacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacat 117  Q
    |||||||||||||| |||||||||| ||||||||||| ||||||||||| |||| || ||| ||| ||  | ||| ||||| | | || ||  |||||||    
T  17668032 gtcatacgcttctaagacttgtctccaagtctccaacatcccattcaatccctcccttgacactcaaattaagactacatcatcttcaaaacacatacat 17668131  T
Q  118 atcggtgctagctcttggatgtgttctgtaagtacatccaaaac 161  Q
     | |||||||| | |||||||||||  ||||||||| |||||||    
T  17668132 cttggtgctagttgttggatgtgtttcgtaagtacacccaaaac 17668175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 145
Target Start/End: Complemental strand, 56374861 - 56374736
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    ||||| |||||| | |||| ||| | ||||| | |||||| |||| |||||| |||||||| || | || ||| ||||| | |||| ||||||||||| |    
T  56374861 catacacttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatct 56374762  T
Q  120 cggtgctagctcttggatgtgttctg 145  Q
    |||||||| |||||||||||||||||    
T  56374761 cggtgctaactcttggatgtgttctg 56374736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 223
Target Start/End: Original strand, 55833367 - 55833553
Alignment:
Q  44 aagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgc-acaaagcatacatatcggtgctagctcttggatgtgtt 142  Q
    |||||||||| ||||||||||||||||||||||| ||||||| |||||| ||||  |  || | |||||||| |  |||| | ||| |||||||||||||    
T  55833367 aagtctccaatctcccattcaattcctctctcgaatctccaaacaggactacattatccgcaaaaaagcatagaactcggagttaggtcttggatgtgtt 55833466  T
Q  143 ctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttg------atccttggtgcaatcctattgttatgggaaaat 223  Q
    |  |||  ||||||||||||||  || ||| ||| ||| | | | |||      | |||||||||||||||||||||||||||||||    
T  55833467 ccataaacacatccaaaactaaagtaaaaagataagggttcagggttgacaccaacccttggtgcaatcctattgttatgggaaaat 55833553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 209
Target Start/End: Complemental strand, 3272984 - 3272811
Alignment:
Q  35 cttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttg 134  Q
    |||||||| ||| |||||||||| ||||||||||||| |||||||||| |||||  || | ||  | | || ||||||||||| ||  ||||| | |||     
T  3272984 cttgtctccaag-ctccaacctctcattcaattcctccctcgactctctaagcaatactatattatctacaaaaagcatacatctcaatgctaacgctta 3272886  T
Q  135 gatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctat 209  Q
    |||  ||||| ||| || ||||||||||||  || |||||||  | |||| | ||||||||||||||||||||||    
T  3272885 gattcgttctataaatagatccaaaactaatgtaaaaatataaagacttagggttgatccttggtgcaatcctat 3272811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 42037387 - 42037334
Alignment:
Q  112 atacatatcggtgctagctcttggatgtgttctgtaagtacatccaaaactaag 165  Q
    |||||| |||||||| ||||||||||||||| | ||||||||||||||||||||    
T  42037387 atacatctcggtgctcgctcttggatgtgttttctaagtacatccaaaactaag 42037334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 229
Target Start/End: Complemental strand, 53704051 - 53703972
Alignment:
Q  150 tacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaatcgtcgg 229  Q
    |||||||||||||||  || ||| ||| || |||| | |||| |||||||||||||||||||||| ||||||||| ||||    
T  53704051 tacatccaaaactaaagtaaaaagataaggacttagggttgacccttggtgcaatcctattgttacgggaaaatcttcgg 53703972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 25867149 - 25867096
Alignment:
Q  33 gacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaag 86  Q
    |||||||||  ||||||||||||||||||  |||||||| ||||||||||||||    
T  25867149 gacttgtcttcaagtctccaacctcccatgtaattcctccctcgactctccaag 25867096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 164
Target Start/End: Complemental strand, 15183570 - 15183482
Alignment:
Q  76 gactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaagtacatccaaaactaa 164  Q
    |||||||||||  |||| | ||| | |||| ||| |||| |||| |||||| |||||||||||| || ||||| |||||||||||||||    
T  15183570 gactctccaagttggactatatcatatgcaaaaaacatatatattggtgctcgctcttggatgtattatgtaaatacatccaaaactaa 15183482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 2296533 - 2296482
Alignment:
Q  47 tctccaacctcccattcaattcctctctcgactctccaagcaggacgacatc 98  Q
    ||||||||||| ||||||||||||| ||  |||||||||||||||| |||||    
T  2296533 tctccaacctctcattcaattcctcactacactctccaagcaggactacatc 2296482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 154
Target Start/End: Original strand, 8918030 - 8918157
Alignment:
Q  27 ttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgct 126  Q
    ||||| |||||||||| ||||||||||| |||||||||||| |||  || ||||| | |  | ||| ||||| | ||||  | |||||||| || |||||    
T  8918030 ttctaagacttgtctccaagtctccaacatcccattcaattgctccatcaactcttctattaagactacatcatctgcaagatgcatacatctcagtgct 8918129  T
Q  127 agctcttggatgtgttctgtaagtacat 154  Q
    || | |||||||||||  ||||||||||    
T  8918130 agttgttggatgtgtttcgtaagtacat 8918157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 129 - 164
Target Start/End: Complemental strand, 21060235 - 21060200
Alignment:
Q  129 ctcttggatgtgttctgtaagtacatccaaaactaa 164  Q
    |||||||||||||| |||||||||||||||||||||    
T  21060235 ctcttggatgtgttatgtaagtacatccaaaactaa 21060200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 229
Target Start/End: Complemental strand, 41427311 - 41427202
Alignment:
Q  122 gtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatat--gggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||| |||||||| ||||| ||||||||| |||||||||||  || ||| | ||  | ||| | | ||||  || ||||||||||||||||||||| |    
T  41427311 gtgctaactcttggacgtgttttgtaagtacttccaaaactaaagtaaaaaaaaataagagctaatggttgacactcggtgcaatcctattgttatggaa 41427212  T
Q  220 aaatcgtcgg 229  Q
    ||||||||||    
T  41427211 aaatcgtcgg 41427202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 41427391 - 41427343
Alignment:
Q  50 ccaacctcccattcaattcctctctcgactctccaagcaggacgacatc 98  Q
    |||| ||||||||||||||||| || ||||||||||| ||||| |||||    
T  41427391 ccaaactcccattcaattcctcccttgactctccaagtaggacaacatc 41427343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 21 - 226
Target Start/End: Original strand, 213 - 418
Alignment:
Q  21 atacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaag-catacatat 119  Q
    |||||| |||| |||| ||||| ||||||| ||||| |||||||||||||| ||||| | |||||||| ||| ||||| | ||| ||||| | ||||| |    
T  213 atacgcatctaagactagtctccaagtctctaaccttccattcaattcctccctcgattttccaagcaagactacatcatttgc-caaagtcgtacatct 311  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
     ||||||| ||||||||||||||| ||||||||||||||||||||  || |||  || ||||||| | |||| ||||||||||||| ||||| ||||| |    
T  312 tggtgctaactcttggatgtgttccgtaagtacatccaaaactaaagtaaaaaggtaagggcttaggattgacccttggtgcaatcatattgatatggaa 411  T
Q  220 aaatcgt 226  Q
    |||||||    
T  412 aaatcgt 418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 31039 - 30830
Alignment:
Q  20 catacgcttctaggacttgtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatat 119  Q
    ||||| |||||| | |||| ||| | ||||| | |||||| |||| |||||| |||||||| || | || ||| ||||| | |||| ||||||||||| |    
T  31039 catacacttctaaggcttgcctccaggtctctagcctcccgttcacttcctccctcgactcacccaccaagactacatcatctgcaaaaagcatacatct 30940  T
Q  120 cggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatggga 219  Q
    |||||||| ||||||||||||||| || | |||||||||||||||  || ||| ||| || |||| | |||| |||||||||| |||||||||| |||||    
T  30939 cggtgctaactcttggatgtgttccgtcaatacatccaaaactaaagtaaaaagataaggacttaggattgacccttggtgcagtcctattgttttggga 30840  T
Q  220 aaatcgtcgg 229  Q
    ||||| ||||    
T  30839 aaatcttcgg 30830  T

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Target: scaffold0606 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 229
Target Start/End: Complemental strand, 9131 - 9030
Alignment:
Q  128 gctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaatcctattgttatgggaaaatcgtc 227  Q
    ||||||||||||||| |||||||||||||||||||||  |  ||| |||  || |||   |||  |||||||||||||||||||||||||||||||||||    
T  9131 gctcttggatgtgttttgtaagtacatccaaaactaaaatgaaaagataatggtttagtgttgtaccttggtgcaatcctattgttatgggaaaatcgtc 9032  T
Q  228 gg 229  Q
    ||    
T  9031 gg 9030  T

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Target: scaffold0113 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 12351 - 12442
Alignment:
Q  68 cctctctcgactctccaagcaggacgacatcttgtgcacaaagcatacatatcggtgctagctcttggatgtgttctgtaagtacatccaaa 159  Q
    |||| |||||||| ||||||| ||| ||||| | | || ||||||||||| ||||||||| |||||| ||||||||||| | ||||||||||    
T  12351 cctccctcgactcaccaagcaagactacatcatcttcaaaaagcatacatctcggtgctaactcttgaatgtgttctgtcaatacatccaaa 12442  T

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Target: scaffold0113; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 188 - 229
Target Start/End: Original strand, 13135 - 13176
Alignment:
Q  188 ttgatccttggtgcaatcctattgttatgggaaaatcgtcgg 229  Q
    |||| |||||||||||||||||||||||||||||||| ||||    
T  13135 ttgacccttggtgcaatcctattgttatgggaaaatcttcgg 13176  T

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Target: scaffold0008 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 38 - 164
Target Start/End: Original strand, 48639 - 48767
Alignment:
Q  38 gtctcaaagtctccaacctcccattcaattcctctctcgactctccaagcaggacgacatcttgtg---cacaaagcatacatatcggtgctagctcttg 134  Q
    ||||| ||||||| |||||||||||||||||||| ||||||||||||||||  || ||||| | ||    | ||||||||||| ||| ||||| ||||||    
T  48639 gtctccaagtctctaacctcccattcaattcctccctcgactctccaagcaaaactacatcatctgaaaaaaaaagcatacatttcgatgctaactcttg 48738  T
Q  135 gatgtgttctgtaagtacatccaaaactaa 164  Q
     || || | ||||||||||| |||||||||    
T  48739 catatgctttgtaagtacat-caaaactaa 48767  T

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Target: scaffold0220 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 217
Target Start/End: Original strand, 25009 - 25121
Alignment:
Q  105 acaaagcatacatatcggtgctagctcttggatgtgttctgtaagtacatccaaaactaagttagaaatatatgggcttaagtttgatccttggtgcaat 204  Q
    |||||| ||| || ||||||||| ||||| |||||||||  |||| |||| |||||||||  || ||| |||  || ||| | |||| ||||||||||||    
T  25009 acaaagaatagatctcggtgctaactcttagatgtgttccataagaacattcaaaactaaagtaaaaagataaaggtttaggcttgacccttggtgcaat 25108  T
Q  205 cctattgttatgg 217  Q
    |||| || |||||    
T  25109 cctaatgctatgg 25121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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