View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19677_high_3 (Length: 450)
Name: NF19677_high_3
Description: NF19677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19677_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Complemental strand, 36717591 - 36717175
Alignment:
| Q |
18 |
aatacaccctgtttgtattccaaccagtattcctcgtagtttttgagacaacgtttctgcgcctgttttatattcagctctgcattgccaatattttcct |
117 |
Q |
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| T |
36717591 |
aatacaccctgtttgtattccaaccagtattccttgtagtttttgagacaacgtttctgcgcctgttttatattcagctctgcattgccaatattttcct |
36717492 |
T |
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| Q |
118 |
tgtgtttagcattatcattaggtgcaaagatatttccaacaannnnnnnngactaaaatgaaagggaacgcaaaacatgtaagaccaagagaaagtgatt |
217 |
Q |
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| T |
36717491 |
tgtgtttagcattatcattaggtgcaaagatatttccaacaattttttttgactaaaatgaaagggaacgcaaaacatgtaagaccaagagaaagtgatt |
36717392 |
T |
|
| Q |
218 |
gattaaaagtgcagtttaattaccttgtttccttatatgttacagatgcaacagaggtaacaaccactgcagttcctgtgcagaacacttcatcagcgct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36717391 |
gattaaaagtgcagtttaattaccttgtttccttatatgttacagatgcaacagaggtaacaaccactgcagttcctgtgcagaacacttcatcagcgct |
36717292 |
T |
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| Q |
318 |
catcatttcctccactgatatggaacgttctatgacctgaacatagttttgttacaaaatttcttttgtaagtttatagccataaatcattaatcatcta |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36717291 |
catcatttcctccactgatatggaacgttctatgacctgaacatagttttgttacaaaatttcttttgtaagtttatagccataaatcattaatcatcta |
36717192 |
T |
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| Q |
418 |
tattgtaaatttgtaga |
434 |
Q |
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||||||||||||||||| |
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| T |
36717191 |
tattgtaaatttgtaga |
36717175 |
T |
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