View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19677_high_6 (Length: 344)
Name: NF19677_high_6
Description: NF19677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19677_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 3209044 - 3208741
Alignment:
| Q |
20 |
ggatgccttcaccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcattggagcaaggacctttgtaaattc |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3209044 |
ggatgccttcaccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcattggagcaaggacctttgtaaattc |
3208945 |
T |
|
| Q |
120 |
atcccttccatacgatgatgttggccatggaactcacacagccagcacggctgctggaaggcccgtgcaaggtgctaatgtctttggtaatgctaatggt |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208944 |
atcccttccatacgatgatgttggccatggaactcacacagccagcacggccgctggaaggcccgtgcaaggtgctaatgtctttggtaatgctaatggt |
3208845 |
T |
|
| Q |
220 |
actgcaattggcatggcaccatatgcacacttggcaatttacaaagtatgcaacatctacggttgtactgaaagttcaatattagctggaatggatgctg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208844 |
actgcaattggcatggcaccatatgcacacttggcaatttacaaagtatgcaacatctacggttgtactgaaagttcaatattagctggaatggatgctg |
3208745 |
T |
|
| Q |
320 |
cagt |
323 |
Q |
| |
|
|||| |
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| T |
3208744 |
cagt |
3208741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 22 - 316
Target Start/End: Complemental strand, 3203068 - 3202774
Alignment:
| Q |
22 |
atgccttcaccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcattggagcaaggacctttgtaaattcat |
121 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||| |
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| T |
3203068 |
atgccttctccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcattggagcaaggaacatcgtaaattcat |
3202969 |
T |
|
| Q |
122 |
cccttccatacgatgatgttggccatggaactcacacagccagcacggctgctggaaggcccgtgcaaggtgctaatgtctttggtaatgctaatggtac |
221 |
Q |
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|||||||||||||| |||||||||| ||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
3202968 |
cccttccatacgattatgttggccacggaactcacacggccagcacggccgctggaaggcccgtgaaaggtgctaatgtctttggtaatgccaatggtac |
3202869 |
T |
|
| Q |
222 |
tgcaattggcatggcaccatatgcacacttggcaatttacaaagtatgcaacatctacggttgtactgaaagttcaatattagctggaatggatg |
316 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| |||||||| ||||||||||||||||||| |
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| T |
3202868 |
tgcaattggcatggcaccatatgcacacttggcaatttacaaagtatgcggcgtctttggttgtgctgaaagtgtcatattagctggaatggatg |
3202774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 22 - 323
Target Start/End: Complemental strand, 3216990 - 3216680
Alignment:
| Q |
22 |
atgccttcaccacctgcaaaatggaatggccattgtgaattcacaggggagaggatttgtaacaagaagatcattggagcaaggacctttgt-------- |
113 |
Q |
| |
|
||||| || ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| || |
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| T |
3216990 |
atgccctctccacctgcaaaatggaatggccactgtgaattcacaggggaaaggatttgtaacaagaagctcattggagcaaggaacttcgtcacagaca |
3216891 |
T |
|
| Q |
114 |
-aaattcatcccttccatacgatgatgttggccatggaactcacacagccagcacggctgctggaaggcccgtgcaaggtgctaatgtctttggtaatgc |
212 |
Q |
| |
|
||||| ||| ||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||| || || || || |||||||| || || || |
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| T |
3216890 |
caaatttatctcttccattcgatgatgttggccacggaactcacacggccagcacggctgctggaaggcttgtacagggggccaatgtcttcggcaacgc |
3216791 |
T |
|
| Q |
213 |
taatggtactgcaattggcatggcaccatatgcacacttggcaatttacaaagtatgcaacatctacggttgtactgaaagttcaatattagctggaatg |
312 |
Q |
| |
|
||| ||||| |||| |||||||||||| |||||||||||||||| ||||||||||||| || | |||||| |||| ||| ||| |||||| |||||| |
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| T |
3216790 |
taaaggtacggcaacaggcatggcaccagatgcacacttggcaatctacaaagtatgcagcagcagtggttgtcctgagagtgcaacattagcaggaatg |
3216691 |
T |
|
| Q |
313 |
gatgctgcagt |
323 |
Q |
| |
|
||||||||||| |
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|
| T |
3216690 |
gatgctgcagt |
3216680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 3232142 - 3232106
Alignment:
| Q |
29 |
caccacctgcaaaatggaatggccattgtgaattcac |
65 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| |
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|
| T |
3232142 |
caccacctgcaaaatggaaaggccattgtgaattcac |
3232106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 3177901 - 3177934
Alignment:
| Q |
31 |
ccacctgcaaaatggaatggccattgtgaattca |
64 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
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| T |
3177901 |
ccacctgcaaaatggaaaggccattgtgaattca |
3177934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 3240939 - 3240906
Alignment:
| Q |
31 |
ccacctgcaaaatggaatggccattgtgaattca |
64 |
Q |
| |
|
||||||||||||||||| |||||||||||||||| |
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|
| T |
3240939 |
ccacctgcaaaatggaaaggccattgtgaattca |
3240906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 3221909 - 3221873
Alignment:
| Q |
29 |
caccacctgcaaaatggaatggccattgtgaattcac |
65 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| |
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| T |
3221909 |
caccacctgcaaaatggaaaggccattgcgaattcac |
3221873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 65
Target Start/End: Complemental strand, 3226891 - 3226855
Alignment:
| Q |
29 |
caccacctgcaaaatggaatggccattgtgaattcac |
65 |
Q |
| |
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||||||||||||||||||| || |||||||||||||| |
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|
| T |
3226891 |
caccacctgcaaaatggaaaggtcattgtgaattcac |
3226855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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