View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19677_low_1 (Length: 586)
Name: NF19677_low_1
Description: NF19677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19677_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 483; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 9 - 567
Target Start/End: Original strand, 26711093 - 26711651
Alignment:
| Q |
9 |
cgaagaatatcattcttgaaatgatacataatgatagttaatataattttagccgaataatattaaaaaactagttccaccaaaacatgtgaaatgagtt |
108 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26711093 |
cgaataatatcattcttgaaatgatacataatggtagttaatataattttagccgaataatattaaaaaactagtcccaccaaaacatgtgaaatgagtt |
26711192 |
T |
|
| Q |
109 |
tcatcaaaagcattagaaacagtacttggacatcgattctctaaaagctctgtgtatcgatttgccgcacacttttcaggtgaagcatattcctcagtgc |
208 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26711193 |
tcatcaaaagcattagagacagtacttggacatcgattctctaaaagctctgtgtatcgatttggcgcacacttttcaggtgaagcatattcctcagtgc |
26711292 |
T |
|
| Q |
209 |
aacaatgctttggctctctagtggtataacatggactcttgcaagcaatttttctcccttcatcgctatacacacccaaccaatcaggacatcgatccaa |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||| ||||||| |
|
|
| T |
26711293 |
aacaatgctttggctctctagtggtataacatggactcttgcaagcaatctttctcccttcatcgctatacacagccaaccaattaggacattgatccaa |
26711392 |
T |
|
| Q |
309 |
caaattcatatcgcacataattttctggcatttggattctaaaggtgttaaagtaacaggtaaactaaaaccatctttaaggtccactttataggaacta |
408 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26711393 |
caaattcatatcgcacatgattttcttgcatttggattctaaaggggttaatgtaacaggtaaactaaaaccatctttaaggtccactttataggaacta |
26711492 |
T |
|
| Q |
409 |
ctaccaccaccttttggaactaaattgagtttcacttgagtcgcaggtgggtttggttccttgtaatggcaatgaatactattagtaccacaatcaccaa |
508 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
26711493 |
ctaccaccaccttttggaactaaattgaatttcacttgagtcacaggtgggtgtggttccttgtaatggcaatgaatattattagtacgacaatcaccaa |
26711592 |
T |
|
| Q |
509 |
ttgcacaatgaaagttactattagggtttccactacatccagttcttacccatattgtg |
567 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26711593 |
tagcacaatgaaagttactattagggtttccactacatccagttcttacccatattgtg |
26711651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 452 - 566
Target Start/End: Original strand, 26715454 - 26715568
Alignment:
| Q |
452 |
caggtgggtttggttccttgtaatggcaatgaatactattagtaccacaatcaccaattgcacaatgaaagttactattagggtttccactacatccagt |
551 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||| |||| |||||||||||||||||||| || |
|
|
| T |
26715454 |
caggtgggtgtggttgcttgtaatggcaatgaatattattagtaccccaatcaccaatagcacaatgaaagctactgttagggtttccactacatccggt |
26715553 |
T |
|
| Q |
552 |
tcttacccatattgt |
566 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
26715554 |
tcttacccatattgt |
26715568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University