View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19677_low_13 (Length: 265)
Name: NF19677_low_13
Description: NF19677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19677_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 248
Target Start/End: Original strand, 30897144 - 30897391
Alignment:
| Q |
1 |
ttttcttgtttgtttttgcacgtggtaaaagataaacaaattgtactatttagagatgatagtgacattccatcataagacgacaaaccaagacaaagtc |
100 |
Q |
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||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30897144 |
ttttcttgtttgtttttgcacgtggtaaaaggaaaataaattgtactatttagagacgatagtgacattccatcataagacgacaaaccaggacaaagtc |
30897243 |
T |
|
| Q |
101 |
tcccagactgctgacatctccttcagaagcttctttccttcatagtctgatttcatcataaactttcaagcaaaaatgctaccttcagatcatgtttaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30897244 |
tcccagactgctgacatctccttcagaagcttctttccttcatagtctgatttcatcataaactttcaagcaaaaatgctaccttctgatcatgtttaaa |
30897343 |
T |
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| Q |
201 |
gtcaaaacaacttctcttttgtattagatgttttcctttgtgctcaca |
248 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
30897344 |
gtcaaaacaacttctcttttgtatcagatgttttcctttgtgttcaca |
30897391 |
T |
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Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 175
Target Start/End: Complemental strand, 7144934 - 7144818
Alignment:
| Q |
59 |
atagtgacattccatcataagacgacaaaccaagacaaagtctcccagactgctgacatctccttcagaagcttctttccttcatagtctgatttcatca |
158 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||| | ||| || ||||| | ||||||||||||| ||| ||||||||||| |
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| T |
7144934 |
atagtgacattccatcataagacgacaaaccagatccgagtctcccagactccagacgtcaccttcgaaggcttctttccttcggagtttgatttcatca |
7144835 |
T |
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| Q |
159 |
taaactttcaagcaaaa |
175 |
Q |
| |
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||| ||| | ||||||| |
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| T |
7144834 |
taagcttccgagcaaaa |
7144818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 14116845 - 14116945
Alignment:
| Q |
41 |
ttgtactatttagaga-tgatagtgacattccatcataagacgacaaaccaagacaaagtctcccagactgctgacatctccttcagaagcttctttcct |
139 |
Q |
| |
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||||||||||||||| ||||||||||||||| ||| |||||||||||||||| || ||||||| |||||| |||| || | |||||||| ||||| ||| |
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| T |
14116845 |
ttgtactatttagagtctgatagtgacattccctcagaagacgacaaaccaagccagagtctcctagactgttgacgtcgctttcagaagtttcttccct |
14116944 |
T |
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| Q |
140 |
t |
140 |
Q |
| |
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| |
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|
| T |
14116945 |
t |
14116945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 92
Target Start/End: Complemental strand, 13929139 - 13929051
Alignment:
| Q |
5 |
cttgtttgtttttgcacgtggtaa-aagataaacaaattgtactatttagag-atgatagtgacattccatcataagacgacaaaccaag |
92 |
Q |
| |
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|||||||||||||||||||||| |||| | ||||| | ||||||| |||| |||||||||||||||||||| ||||| |||||||||| |
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| T |
13929139 |
cttgtttgtttttgcacgtggtttgaaga-agacaaactctactattcagagtatgatagtgacattccatcagaagacaacaaaccaag |
13929051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 180
Target Start/End: Complemental strand, 12845315 - 12845279
Alignment:
| Q |
144 |
agtctgatttcatcataaactttcaagcaaaaatgct |
180 |
Q |
| |
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||||||||| |||||||||||| |||||||||||||| |
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| T |
12845315 |
agtctgattccatcataaacttccaagcaaaaatgct |
12845279 |
T |
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