View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19677_low_18 (Length: 227)

Name: NF19677_low_18
Description: NF19677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19677_low_18
NF19677_low_18
[»] chr1 (10 HSPs)
chr1 (5-227)||(35829438-35829660)
chr1 (27-222)||(49348454-49348649)
chr1 (27-216)||(43241439-43241628)
chr1 (27-216)||(51441822-51442011)
chr1 (27-222)||(8670953-8671148)
chr1 (27-216)||(32405521-32405707)
chr1 (41-222)||(29173581-29173762)
chr1 (119-219)||(34828140-34828240)
chr1 (142-222)||(45833710-45833790)
chr1 (40-126)||(52836199-52836284)
[»] chr4 (9 HSPs)
chr4 (27-221)||(48623580-48623774)
chr4 (27-222)||(23907354-23907549)
chr4 (27-216)||(435267-435456)
chr4 (27-216)||(1778075-1778264)
chr4 (27-222)||(27451225-27451420)
chr4 (7-220)||(39707477-39707692)
chr4 (40-222)||(53703657-53703840)
chr4 (131-214)||(16002147-16002230)
chr4 (27-89)||(16001127-16001189)
[»] chr6 (8 HSPs)
chr6 (5-222)||(30669906-30670124)
chr6 (27-222)||(20428689-20428884)
chr6 (27-222)||(5260300-5260495)
chr6 (72-222)||(3629346-3629496)
chr6 (110-222)||(9705893-9706005)
chr6 (110-221)||(6082518-6082629)
chr6 (41-222)||(2681488-2681669)
chr6 (27-106)||(6082424-6082503)
[»] chr7 (10 HSPs)
chr7 (27-222)||(36651029-36651224)
chr7 (27-222)||(39907431-39907626)
chr7 (27-222)||(32629647-32629838)
chr7 (5-221)||(38896628-38896846)
chr7 (27-221)||(33350859-33351053)
chr7 (110-222)||(38606157-38606269)
chr7 (83-222)||(22346603-22346742)
chr7 (27-218)||(24178251-24178442)
chr7 (27-189)||(11592724-11592886)
chr7 (140-222)||(46356903-46356985)
[»] chr8 (7 HSPs)
chr8 (27-222)||(42855065-42855262)
chr8 (27-216)||(36544187-36544376)
chr8 (27-214)||(15216331-15216516)
chr8 (146-219)||(6184814-6184887)
chr8 (27-116)||(30579380-30579469)
chr8 (41-149)||(31977665-31977773)
chr8 (159-222)||(36566293-36566356)
[»] scaffold0113 (1 HSPs)
scaffold0113 (27-222)||(13310-13505)
[»] chr5 (8 HSPs)
chr5 (27-222)||(20318026-20318221)
chr5 (27-214)||(24177559-24177746)
chr5 (28-222)||(2076526-2076720)
chr5 (27-210)||(1288592-1288775)
chr5 (27-222)||(26994-27188)
chr5 (8-148)||(756080-756222)
chr5 (16-219)||(37123592-37123798)
chr5 (27-77)||(22832091-22832141)
[»] chr3 (7 HSPs)
chr3 (27-222)||(38849137-38849332)
chr3 (27-222)||(51448761-51448956)
chr3 (27-222)||(52137863-52138058)
chr3 (31-217)||(3368802-3368989)
chr3 (27-165)||(27916613-27916749)
chr3 (31-222)||(50630371-50630562)
chr3 (129-219)||(48220917-48221008)
[»] chr2 (10 HSPs)
chr2 (27-222)||(452668-452863)
chr2 (29-216)||(8179830-8180017)
chr2 (27-222)||(45368678-45368873)
chr2 (27-222)||(24584658-24584856)
chr2 (8-165)||(13148336-13148494)
chr2 (31-163)||(37281145-37281277)
chr2 (27-222)||(33251350-33251545)
chr2 (27-172)||(7789577-7789722)
chr2 (56-220)||(14769369-14769528)
chr2 (159-222)||(2609695-2609758)
[»] scaffold0018 (1 HSPs)
scaffold0018 (44-222)||(30520-30698)
[»] scaffold0045 (1 HSPs)
scaffold0045 (72-222)||(90142-90292)
[»] scaffold0171 (1 HSPs)
scaffold0171 (113-222)||(5568-5677)
[»] scaffold0073 (1 HSPs)
scaffold0073 (41-149)||(20430-20538)


Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 5 - 227
Target Start/End: Complemental strand, 35829660 - 35829438
Alignment:
Q  5 caaattatagaggagttaaacttgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaat 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35829660 caaattatagaggagttaaacttgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaat 35829561  T
Q  105 ttagatttatgcctgggaggtcgactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagtttt 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  35829560 ttagatttatgcctgggaggtcgactatggaagtgatctacttacttagacgtatgatggaacaatattggacaaataaaaaagatatacacttagtttt 35829461  T
Q  205 cattgatttggagaaggcttata 227  Q
    |||||||||||||||||||||||    
T  35829460 cattgatttggagaaggcttata 35829438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 49348649 - 49348454
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||| ||||||||| ||||| ||| | ||| ||||||| || ||||||||||   ||||||||||| | |||||||||||||||||    
T  49348649 tgagtcataccatgaagtcatgggaaagggtgatcgaaagaagactaagaaagaagactcgagttatggataaccaatttggttttatgcctgggaggtc 49348550  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    |||||||||||  |||||||||||| ||||  ||||||| | |||| |||| |||||||||||  | ||||||||||||||||||||||| |||||    
T  49348549 gactatggaagcaatctacttacttcgacgcgtgatggagcgatatcggacggataaaaaagacttgcacttagttttcattgatttggaaaaggc 49348454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 43241628 - 43241439
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||||||||||| ||||| ||| | ||| |||||||  | |||| ||||||  ||||||||||| | |||||||||||||||||    
T  43241628 tgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcaagttacggataaccaatttggttttatgcctgggaggtc 43241529  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttgga 216  Q
    |||||||||||  |||||||||||| ||||  ||||||| | |||| |||| |||||||||||  | |||||||||||||||||||||||    
T  43241528 gactatggaagcaatctacttacttcgacgcgtgatggagcgatatcggacggataaaaaagacttgcacttagttttcattgatttgga 43241439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 51442011 - 51441822
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||||||||||| ||||| ||| | ||| |||||||  | |||||||||||  ||||||||||| | |||||||||||||||||    
T  51442011 tgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaatttggttttatgcctgggaggtc 51441912  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttgga 216  Q
    |||||||||||  |||||||||| | ||||  |||||||   ||||  ||| |||||||||||  | |||||||||||||||||||||||    
T  51441911 gactatggaagcaatctacttacatcgacgcgtgatggagtgatatcagacggataaaaaagacttgcacttagttttcattgatttgga 51441822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 8670953 - 8671148
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||||||||||| ||||| ||| | | | |||||||  |  ||||||||||  ||||  ||||| | |||||||||||||||||    
T  8670953 tgagtcataccatgaagttatgggaaagggtgatggaaagaaaactaagaaaggagcctcgagttacggataaaaaatttggttttatgcctgggaggtc 8671052  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    |||||||||||  |||||||||||| ||||  ||||||| | |||| |||| |||||||||||  | ||||||||||||||||||||||| |||||    
T  8671053 gactatggaagcaatctacttacttcgacgcgtgatggagcgatatcggacggataaaaaagacttgcacttagttttcattgatttggaaaaggc 8671148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 32405707 - 32405521
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||||||||||  |||||||| |||||| |||||||||  | |||||||||  |||| |||||| ||||||||||| | |||||    
T  32405707 tgagtcataccatgaagttatgggaaaaggtgattgagcggagactaagaaaaag-attcgagttaccaataatcaatttggatttatgccttgaaggtc 32405609  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttgga 216  Q
    |||||||||||  |||||||||||| ||| | |||||||   ||||  ||| |||||||||||| | |||||||||||||||||||||||    
T  32405608 gactatggaagcaatctacttacttcgacatgtgatgga--gatatcagactgataaaaaagatgtgcacttagttttcattgatttgga 32405521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 29173762 - 29173581
Alignment:
Q  41 aagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtcgactatggaagtga 140  Q
    |||||||| |||||  |||||||||| | | |||||||| | |||||||||||  ||||| ||||| | ||||||||| ||||||||||||||||||  |    
T  29173762 aagttatgcgaaaggatgattgaacgaaaactaagaaaagagactcgagttacggataactaatttggttttatgcctaggaggtcgactatggaagcaa 29173663  T
Q  141 tctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    | ||||||||| ||||| ||||||| | ||||  ||| |||||||||||  | ||||||||||| |||||||||||||||||    
T  29173662 tttacttacttcgacgtgtgatggagcgatatcagacggataaaaaagacttgcacttagtttttattgatttggagaaggc 29173581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 34828240 - 34828140
Alignment:
Q  119 gggaggtcgactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggaga 218  Q
    |||||||||| ||| |||| ||||||| ||||| |||||| ||||||   |||| ||||| ||||||| ||    ||||||||||||||||||||| |||    
T  34828240 gggaggtcgattatagaagcgatctacctacttcgacgtacgatggagagatatcggacatataaaaatgactcgcacttagttttcattgatttgaaga 34828141  T
Q  219 a 219  Q
    |    
T  34828140 a 34828140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 222
Target Start/End: Original strand, 45833710 - 45833790
Alignment:
Q  142 ctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    |||||||||| ||||| |||||||   |||||||||| ||||||||||| |  |  ||||||||||||||||| |||||||    
T  45833710 ctacttacttcgacgtgtgatggagtgatattggacaaataaaaaagatttgtatatagttttcattgatttgaagaaggc 45833790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 126
Target Start/End: Original strand, 52836199 - 52836284
Alignment:
Q  40 gaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||  ||||||||||| || ||| | |||||||| | ||||||| |||| || |||||||||| ||||||| |||||||||    
T  52836199 gaagttatgataaagagtgattaaatggacactaagaaaagacactcgag-tactgatcaccaatttagttttatgcatgggaggtc 52836284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 27 - 221
Target Start/End: Complemental strand, 48623774 - 48623580
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||||||||||| ||||| ||| | ||| ||||||| || |||||||||||  ||||||||||| | |||||||||||||||||    
T  48623774 tgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaagaagactcgagttacagataaccaatttggttttatgcctgggaggtc 48623675  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaagg 221  Q
    |||||||||||  ||||||||| || ||||  ||||||| | |||| |||| |||||||||||  | ||||||||||||||||||||||| ||||    
T  48623674 gactatggaagcaatctacttagttcgacgcgtgatggagcgatataggacggataaaaaagacttgcacttagttttcattgatttggaaaagg 48623580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 23907549 - 23907354
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    ||||||||||||  |||||||||||||| ||||| ||| | ||| |||||||  | |||||||||||  |||| |||||| | |||||||||||||||||    
T  23907549 tgagtcataccataaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataatcaatttggttttatgcctgggaggtc 23907450  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    |||||||||||  |||||||||||| ||||  ||||||| | |||| | || |||||||||||  | ||||||||||||||||||||||| |||||    
T  23907449 gactatggaagcaatctacttacttcgacgcgtgatggagcgatatcgaacggataaaaaagacttgcacttagttttcattgatttggaaaaggc 23907354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 435267 - 435456
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||||||||||| ||||| ||| | ||| |||||||  |  ||||||||||  ||||||||||| | ||||||||||||||||     
T  435267 tgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggaggctcgagttacggataaccaatttggttttatgcctgggaggtt 435366  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttgga 216  Q
    |||||||||||  |||||||||||| ||||  |||| || | |||| |||| |||||||||||  | |||||||||||||||||||||||    
T  435367 gactatggaagcaatctacttacttcgacgcgtgatagagcgatatcggacggataaaaaagacttgcacttagttttcattgatttgga 435456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 1778264 - 1778075
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| | | ||||||||||| ||||| ||| | ||| |||||||  | |||||||||||  |||||||||||   ||||||||||||||||     
T  1778264 tgagtcataccatggaattatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaatttgattttatgcctgggaggtt 1778165  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttgga 216  Q
    |||||||||||  |||||||||||| ||||| ||||||| | |||| |||| ||||||||| |  | |||||||||||||||||||||||    
T  1778164 gactatggaagcaatctacttacttcgacgtgtgatggagcgatatcggacggataaaaaaaacttgcacttagttttcattgatttgga 1778075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 27451420 - 27451225
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||||||||||| || ||||| || ||| |||||||| | ||||  |||||  |||||  |||| | ||||| ||| |||||||    
T  27451420 tgagtcataccatgaagttatgggaaagggtaattgagcgaagactaagaaaagagactcatgttacggataacttatttggttttattcctcggaggtc 27451321  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    ||||||||||| || |||||||||| |||| |||||||| | |||| |||| |||||||||||  | || |||||||||| | |||||||||||||    
T  27451320 gactatggaagcgaactacttactttgacgcatgatggagcgatatcggacggataaaaaagacttgcaattagttttcacttatttggagaaggc 27451225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 220
Target Start/End: Original strand, 39707477 - 39707692
Alignment:
Q  7 aattatagaggagttaaact--tgagtcataccaagaagttatgggaaagag-tgattgaacggagagtaagaaaaaatactcgagttacttataaccaa 103  Q
    |||||||||||| |||||||  |||||||||||| |||||||| ||||| || |||||||||| ||| |||||||| | | |||| ||||  ||||||||    
T  39707477 aattatagaggaattaaactaatgagtcataccatgaagttataggaaaaaggtgattgaacgaagactaagaaaagaaagtcgatttacgaataaccaa 39707576  T
Q  104 tttagatttatgcctgggaggtcgactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttt 203  Q
    ||| | ||||||||||| || | ||||| | ||| ||| ||||||||| ||||| ||||||| | |||   ||| |||||||||||  | ||||||||||    
T  39707577 ttttgttttatgcctgg-agattgactacgaaagcgatttacttacttcgacgtgtgatggagcgataacagacggataaaaaagacttgcacttagttt 39707675  T
Q  204 tcattgatttggagaag 220  Q
    |||||||||||||||||    
T  39707676 tcattgatttggagaag 39707692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 40 - 222
Target Start/End: Original strand, 53703657 - 53703840
Alignment:
Q  40 gaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtcgactatggaagtg 139  Q
    ||||||||||||||| ||||| ||| | ||| |||||||  | ||||| |||||  |||||||| ||   |||||| ||| |||||||||||||||||      
T  53703657 gaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcgggttacagataaccaaattgattttatgtctgagaggtcgactatggaagca 53703756  T
Q  140 atctacttacttagacgtatgatggaacaatattggacagat-aaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    |||||||||||| ||||  ||| ||| | |||| |||| ||| ||||| ||  | ||||||||||||| ||||||||| |||||    
T  53703757 atctacttacttcgacgcgtgacggagcgatatcggacggatgaaaaaggacttgcacttagttttcactgatttggaaaaggc 53703840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 131 - 214
Target Start/End: Original strand, 16002147 - 16002230
Alignment:
Q  131 atggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttg 214  Q
    |||||||  ||||||||||||  |||| ||||| |||||||||| || ||||||||| |  | |||||||||||||||||||||    
T  16002147 atggaagcaatctacttacttcaacgtgtgatgtaacaatattgcacggataaaaaaaaatttcacttagttttcattgatttg 16002230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 89
Target Start/End: Complemental strand, 16001189 - 16001127
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgag 89  Q
    |||||||||| | ||||||||||||||| |||||| |||| ||| |||||||| | |||||||    
T  16001189 tgagtcatactatgaagttatgggaaagggtgatttaacgaagactaagaaaagaaactcgag 16001127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 5e-43; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 5 - 222
Target Start/End: Original strand, 30669906 - 30670124
Alignment:
Q  5 caaattatagaggagttaaact--tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataacca 102  Q
    |||||||||| ||| |||| ||  |||||||||||| |||||||||| ||||  |||||||||| ||| |||||||  | |||| ||||||  |||||||    
T  30669906 caaattataggggaattaagctaatgagtcataccatgaagttatggcaaaggatgattgaacgaagactaagaaatgagactcaagttacggataacca 30670005  T
Q  103 atttagatttatgcctgggaggtcgactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagtt 202  Q
    |||| | |||||||| || ||||||||||||||||  |||||||||||| ||||| ||||||| | |||| ||||||| ||||||||  |||||||||||    
T  30670006 atttggttttatgccagg-aggtcgactatggaagcaatctacttacttcgacgtgtgatggagcgatatcggacagagaaaaaagacttacacttagtt 30670104  T
Q  203 ttcattgatttggagaaggc 222  Q
    ||||||||||||||||||||    
T  30670105 ttcattgatttggagaaggc 30670124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 20428884 - 20428689
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||||||||||| || |||||||| ||| |||||| | | ||||  |||||  ||||||||| | | ||||||| ||||||||     
T  20428884 tgagtcataccatgaagttatgggaaagggtaattgaacgaagactaagaacagagactcacgttacaaataaccaatatggttttatgcttgggaggtt 20428785  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    ||||||||||| ||||||||||||| ||||| ||||||| | |||| |||| |||||||||||  ||||| ||||||||||||||||| |||||||    
T  20428784 gactatggaagcgatctacttactttgacgtgtgatggagcgatatcggacggataaaaaagacttacacctagttttcattgatttgtagaaggc 20428689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 5260495 - 5260300
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||||||||||| || ||||| || ||| | |||||| | ||||  |||||  ||||||||||| | ||||||  |||||||||    
T  5260495 tgagtcataccatgaagttatgggaaagggtaattgagcgaagacttagaaaagagactcacgttacggataaccaatttggttttatgtatgggaggtc 5260396  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    || |||||||| |||||  ||| || ||||  ||||||| | |||| |||| |||||||||||  |||||||||||||||| ||||||||||||||    
T  5260395 gattatggaagcgatctctttatttcgacgcctgatggagcgatatcggacggataaaaaagacttacacttagttttcatcgatttggagaaggc 5260300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 222
Target Start/End: Original strand, 3629346 - 3629496
Alignment:
Q  72 taagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtcgactatggaagtgatctacttacttagacgtatgatggaacaata 171  Q
    |||||||| | |||||||||||  |||| ||||||   ||||||| | |||||||||| |||||| |||||||||||||| | ||||||||||| | |||    
T  3629346 taagaaaagagactcgagttacggataatcaatttgattttatgctttggaggtcgacaatggaaatgatctacttacttcggcgtatgatggagcgata 3629445  T
Q  172 ttggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    | ||||| | ||||||||  ||||||||||||||||||||||| |||||||    
T  3629446 tcggacaaacaaaaaagacttacacttagttttcattgatttgaagaaggc 3629496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 110 - 222
Target Start/End: Original strand, 9705893 - 9706005
Alignment:
Q  110 tttatgcctgggaggtcgactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattg 209  Q
    ||||||||||||| |||||||||||||  ||||||||||||| ||||   |||||| | |||| |||| |||||||||||  ||||||||||||||||||    
T  9705893 tttatgcctgggaagtcgactatggaaacgatctacttacttcgacgcgcgatggagcgatatcggacggataaaaaagacttacacttagttttcattg 9705992  T
Q  210 atttggagaaggc 222  Q
    |||||||||||||    
T  9705993 atttggagaaggc 9706005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 110 - 221
Target Start/End: Original strand, 6082518 - 6082629
Alignment:
Q  110 tttatgcctgggaggtcgactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattg 209  Q
    ||||||||||||||||||||||||||||  |||||||||||| ||| | ||||| | | |||| |||| |||||||| ||  | ||||||||||||||||    
T  6082518 tttatgcctgggaggtcgactatggaagcaatctacttacttcgacatgtgatgcagcgatatcggacggataaaaaggacttgcacttagttttcattg 6082617  T
Q  210 atttggagaagg 221  Q
    ||||||| ||||    
T  6082618 atttggaaaagg 6082629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 222
Target Start/End: Complemental strand, 2681669 - 2681488
Alignment:
Q  41 aagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtcgactatggaagtga 140  Q
    |||||| ||||||| ||||||||| | ||| |||||||| | |||||||  |   ||||||||||| | |||||| |||  | || ||||||||||| ||    
T  2681669 aagttacgggaaagggtgattgaaggaagattaagaaaagagactcgaggaatggataaccaatttggttttatgtctgtaaagttgactatggaagcga 2681570  T
Q  141 tctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
      |||||| || |||||||| |  ||| ||||  ||| | ||||||| |  | |||||||||||||||||||||||||||||    
T  2681569 cttacttagttcgacgtatggtacaacgatatcagacgggtaaaaaatacttgcacttagttttcattgatttggagaaggc 2681488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 106
Target Start/End: Original strand, 6082424 - 6082503
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaattt 106  Q
    |||||||||||| ||||||||||||||| ||||| ||| | ||| |||||||  | |||||||||||  |||||||||||    
T  6082424 tgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaattt 6082503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 2e-42; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 36651029 - 36651224
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||||||||||| ||||||||| | ||| |||||||  | |||||||||||  ||||||||||| | |||||| ||||||||||    
T  36651029 tgagtcataccatgaagttatgggaaagggtgattgaaagaagactaagaaaggagactcgagttacggataaccaatttggttttatgtctgggaggtc 36651128  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    || ||||||||  |||||||||||| ||||  ||||||| | |||| |||| |||||||||||  | ||||||||||||||||||||||| |||||    
T  36651129 gattatggaagcaatctacttacttcgacgcgtgatggagcgatatcggacggataaaaaagacttgcacttagttttcattgatttggaaaaggc 36651224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 39907626 - 39907431
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||||||||||| ||||| ||| | ||| |||||||  | || ||||||||  ||||||||||| | |||||||||||||||||    
T  39907626 tgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagacccgagttacggataaccaatttggttttatgcctgggaggtc 39907527  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    |||| ||||||  |||||||||||| ||||  ||||||| | |||| ||||||||||||||||  | ||||||||||||||||||||||| |||||    
T  39907526 gactgtggaagcaatctacttacttcgacgcgtgatggagcgatatcggacagataaaaaagacttgcacttagttttcattgatttggaaaaggc 39907431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 32629647 - 32629838
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||||||||||| || |||||||| ||| |||||||| | ||||  |||||  ||||||||||| | ||||||||||| |||||    
T  32629647 tgagtcataccatgaagttatgggaaagggtaattgaacgaagactaagaaaagagactcacgttacggataaccaatttggctttatgcctggaaggtc 32629746  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    ||||||||||| |||||||||     ||||  |||||||   |||| |||| |||||||||||  |||||||||||||||||||||||||||||||    
T  32629747 gactatggaagcgatctacttc----gacgcgtgatggagagatatcggacggataaaaaagacttacacttagttttcattgatttggagaaggc 32629838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 38896628 - 38896846
Alignment:
Q  5 caaattatagaggagttaaact--tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataacca 102  Q
    |||||||||| ||| |||| ||  |||||||||||| |||||||||| |||| ||||| ||| | ||| |||||||  | |||||||||||  |||||||    
T  38896628 caaattataggggaattaagctaatgagtcataccatgaagttatggaaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataacca 38896727  T
Q  103 atttagatttatgcctgggaggtcgactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagtt 202  Q
    |||  | ||||||||||||||||| ||||||||||  |||||||||||| |||| |  ||||| | |||| |||| |||||||||||  | |||||||||    
T  38896728 attcggttttatgcctgggaggtcaactatggaagcaatctacttacttcgacgcacaatggagcgatatcggacggataaaaaagacttgcacttagtt 38896827  T
Q  203 ttcattgatttggagaagg 221  Q
    |||||| ||||||| ||||    
T  38896828 ttcattaatttggaaaagg 38896846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 27 - 221
Target Start/End: Complemental strand, 33351053 - 33350859
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| |||||| |||||||| |||||  || | ||| |||||||  | |||| ||||||  ||||||||||| | ||||||| |||||||||    
T  33351053 tgagtcataccatgaagttgtgggaaagggtgatcaaaagaagactaagaaaggagactctagttacggataaccaatttggttttatgcttgggaggtc 33350954  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaagg 221  Q
    |||||||||||  ||||||||||||  |||  ||||||| | |||| |||| |||||||||||  | |||||||||||| |||||||||| ||||    
T  33350953 gactatggaagcaatctacttacttcaacgcgtgatggagcgatatcggacggataaaaaagacttgcacttagttttctttgatttggaaaagg 33350859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 110 - 222
Target Start/End: Original strand, 38606157 - 38606269
Alignment:
Q  110 tttatgcctgggaggtcgactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattg 209  Q
    |||||| ||||||||||||||||| ||| ||||||||||||| ||||  ||||||| | |||| |||| |||||||||||  ||||||||||||||||||    
T  38606157 tttatgtctgggaggtcgactatgaaagcgatctacttacttcgacgcgtgatggagcgatatcggacggataaaaaagacttacacttagttttcattg 38606256  T
Q  210 atttggagaaggc 222  Q
    |||| ||||||||    
T  38606257 attttgagaaggc 38606269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 83 - 222
Target Start/End: Original strand, 22346603 - 22346742
Alignment:
Q  83 actcgagttacttataaccaatttagatttatgcctgggaggtcgactatggaagtgatctacttacttagacgtatgatggaacaatattggacagata 182  Q
    ||||||||| |  ||||||||||| | ||||||||||||||||||||||||||||  |||||||||||| |||   ||||||| | |||| | || ||||    
T  22346603 actcgagtttcggataaccaatttggttttatgcctgggaggtcgactatggaagcaatctacttacttcgacacgtgatggagcgatatcgaacggata 22346702  T
Q  183 aaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    |||||||  | ||||||||||||||||||||||| |||||    
T  22346703 aaaaagacttgcacttagttttcattgatttggaaaaggc 22346742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 218
Target Start/End: Complemental strand, 24178442 - 24178251
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||||||||||| |||||| |||| ||| |||||||| | |||| ||||||  ||||| ||||| | |||| |||  |||||||    
T  24178442 tgagtcataccatgaagttatgggaaagggtgattcaacgaagactaagaaaagagactcaagttacggataacaaatttggttttacgccctggaggtc 24178343  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggaga 218  Q
    ||||||||||| ||||||||| ||  || |  ||||||| | |||  |||| |||| |||||   |||| ||||||||||||||||||||||    
T  24178342 gactatggaagcgatctacttgctgcgatgcgtgatggagcgataccggacggatacaaaagggttacaattagttttcattgatttggaga 24178251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 189
Target Start/End: Original strand, 11592724 - 11592886
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||||||||||| ||||| ||| | ||| |||||||  | |||||||||||  ||||||||||| | |||||| || |||||||    
T  11592724 tgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaatttggttttatggcttggaggtc 11592823  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaaga 189  Q
    |||||||||||  |||| ||||||| ||||  ||||||| | |||| ||||  ||||||||||    
T  11592824 gactatggaagcaatctgcttacttcgacgcgtgatggagcgatatcggacgaataaaaaaga 11592886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 46356985 - 46356903
Alignment:
Q  140 atctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    |||||||||||| ||||  ||||||| | |||| ||||  ||||||||||  | ||||||||||||||||||||||| |||||    
T  46356985 atctacttacttcgacgcgtgatggagcgatatcggacgaataaaaaagacttgcacttagttttcattgatttggaaaaggc 46356903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 7e-42; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 42855262 - 42855065
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| |||||||||||||||    ||||| || ||| |||||||| | ||||| |||||  ||||||||||| | |||||||||||||||||    
T  42855262 tgagtcataccatgaagttatgggaaaggaaaattgagcgaagactaagaaaagagactcgcgttacggataaccaatttggttttatgcctgggaggtc 42855163  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagat--aaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    |||||| |||| ||||||||||||| ||||  ||||||| | ||||||||| |||  ||||||||  |||||||||||||||||||||||||||||||    
T  42855162 gactattgaagcgatctacttacttcgacgcgtgatggagcgatattggacggataaaaaaaagacttacacttagttttcattgatttggagaaggc 42855065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 27 - 216
Target Start/End: Original strand, 36544187 - 36544376
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||||||||||| ||||| ||| | ||| |||||||  | |||| ||||||  ||||||||||| | |||||||||||||||||    
T  36544187 tgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcaagttacggataaccaatttggttttatgcctgggaggtc 36544286  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttgga 216  Q
    |||||||||||  |||||||||||| ||||  |||| || | ||||  ||| |||||||||||| | |||||||||||||||||||||||    
T  36544287 gactatggaagcaatctacttacttcgacgcgtgattgagcgatatctgacggataaaaaagatttgcacttagttttcattgatttgga 36544376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 27 - 214
Target Start/End: Complemental strand, 15216516 - 15216331
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||||| ||||| || ||||| || ||| |||||||| | |||| |||||   |||| |||||| | |||||||||||||||||    
T  15216516 tgagtcataccatgaagttatgcgaaagggtaattgagcgaagactaagaaaagagactcaagttatggataatcaatttggttttatgcctgggaggtc 15216417  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttg 214  Q
    ||||||| ||| ||||||||||||| ||||  ||||||  | |||| | |  |||||||||||  |||| ||||||||||||||||||    
T  15216416 gactatgaaagcgatctacttacttcgacgcttgatgg--cgatatcgaatggataaaaaagacttacatttagttttcattgatttg 15216331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 219
Target Start/End: Original strand, 6184814 - 6184887
Alignment:
Q  146 ttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaa 219  Q
    |||||| ||||| ||||||| | |||| ||||||||||||||||  ||||||||||||||||||||||||||||    
T  6184814 ttacttcgacgtgtgatggagcgatatcggacagataaaaaagacttacacttagttttcattgatttggagaa 6184887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 116
Target Start/End: Complemental strand, 30579469 - 30579380
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgc 116  Q
    |||||||||||| ||||||||  ||| ||||||||||| ||| | |||||||    ||| ||||||||||| |||||||||| |||||||    
T  30579469 tgagtcataccacgaagttatccgaacgagtgattgaatggatactaagaaacgggacttgagttacttattaccaatttagttttatgc 30579380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 31977665 - 31977773
Alignment:
Q  41 aagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtcgactatggaagtga 140  Q
    |||||||||  ||||||||||||||||||| || | ||| | ||| ||| |||| |||| |||||||| ||| ||  |  ||||||||||||| ||||||    
T  31977665 aagttatggacaagagtgattgaacggagactagggaaatagactagagctactaataatcaatttagttttgtgtttaagaggtcgactatgaaagtga 31977764  T
Q  141 tctacttac 149  Q
    || ||||||    
T  31977765 tccacttac 31977773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 36566356 - 36566293
Alignment:
Q  159 tgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    ||||||| | |||| |||| |||||||||||  | ||||||||||||||||||||||| |||||    
T  36566356 tgatggagcgatatcggacggataaaaaagacttgcacttagttttcattgatttggaaaaggc 36566293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 13505 - 13310
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||||||||||  ||||||||||| ||| ||||| | || |||| ||||||  ||||||||||| | ||||||| |||||||||    
T  13505 tgagtcataccatgaagttatgggaaatggtgattgaacgaagactaagagagaagactccagttacggataaccaatttggttttatgcttgggaggtc 13406  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    ||||||||||  ||||||||||||| ||||  || |||| | ||||  ||| ||||| |||||  |||||||||||||||||||||||||||||||    
T  13405 gactatggaaacgatctacttacttcgacgcgtggtggagcgatatatgacggataataaagacttacacttagttttcattgatttggagaaggc 13310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 5e-40; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 20318026 - 20318221
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||||||||||| ||||| ||| | ||| |||||||  | |||||||||||  ||||||||||| | |||||||||||||||||    
T  20318026 tgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacagataaccaatttggttttatgcctgggaggtc 20318125  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    |||||||||||  |||||||||||| ||||  ||||||| | |||| |||| |||||| ||||  | ||||||||||||||| ||||||| |||||    
T  20318126 gactatggaagcaatctacttacttcgacgcgtgatggagcgatatcggacggataaataagacttgcacttagttttcattaatttggaaaaggc 20318221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 27 - 214
Target Start/End: Original strand, 24177559 - 24177746
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||||||||||| ||||| ||| | ||| |||||||  | |||||||||||  ||||||||||| | ||||||||||| |||||    
T  24177559 tgagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaatttggttttatgcctggaaggtc 24177658  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttg 214  Q
    ||||| |||||  |||||||||||| |||| |||||||| | |||| |||| |||||||||||  | |||||||||||||||||||||    
T  24177659 gactacggaagcaatctacttacttcgacgcatgatggagcgatatcggacggataaaaaagacttgcacttagttttcattgatttg 24177746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 28 - 222
Target Start/End: Complemental strand, 2076720 - 2076526
Alignment:
Q  28 gagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtcg 127  Q
    ||||||||||| ||||||||||||||| ||||| ||| | ||| |||||||  | |||||||||||  ||||||||||| | ||||||||||||||||||    
T  2076720 gagtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaatttggttttatgcctgggaggtcg 2076621  T
Q  128 actatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    ||||||||||  |||||||||||| ||||   |||||| | |||| |||| |||||||||||  | |||||| |||||||||||||||| |||||    
T  2076620 actatggaagcaatctacttacttcgacgcgggatggagcgatatcggacggataaaaaagacttgcacttaattttcattgatttggaaaaggc 2076526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 1288775 - 1288592
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| |||| |||||||||| ||||| ||| | ||| |||||||  | |||||||||||  ||||||||||| | |||||| ||||||||||    
T  1288775 tgagtcataccatgaagctatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaatttggttttatggctgggaggtc 1288676  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattga 210  Q
    || | ||||||  |||||||||||| ||||  ||||||| |||||| |||| ||||||||||| || |||||||||||||||||    
T  1288675 gattgtggaagcaatctacttacttcgacgcgtgatggagcaatatcggacggataaaaaagacatgcacttagttttcattga 1288592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 26994 - 27188
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||| |||| |  | ||||||||||| | | |||||||||| ||| |||||||| ||||||| ||| | ||||||| ||  || ||    
T  26994 tgagtcataccatgaagtcatggaagcgggtgattgaacgaaaattaagaaaaaagacttgagttactgataaccattttggttttatgcttga-agatc 27092  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    ||||||||||| |||||||||||||  |||| ||||| | | |||| | || |||||||||||  | |||||||||||||||||||||||||||||    
T  27093 gactatggaagcgatctacttacttcaacgtgtgatgaagcgatatcgaacggataaaaaagacttgcacttagttttcattgatttggagaaggc 27188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 756222 - 756080
Alignment:
Q  8 attatagaggagttaaactt--gagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatt 105  Q
    |||||| |||| ||||||||  ||||| |||||| ||||||||||||||||||||||| ||||||  ||||||| | |||| || ||   |||| |||||    
T  756222 attataaaggaattaaacttaagagtcgtaccaacaagttatgggaaagagtgattgagcggagacaaagaaaagagactcaaggtaacgataatcaatt 756123  T
Q  106 tagatttatgcctgggaggtcgactatggaagtgatctactta 148  Q
    ||  |||||||||| |||||  || ||||||| ||||||||||    
T  756122 taattttatgcctgagaggttaacaatggaagcgatctactta 756080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 37123592 - 37123798
Alignment:
Q  16 ggagttaaactt--gagtcataccaagaagttatgggaaaga--gtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatt 111  Q
    ||||||||||||  || |||||||| |||||||||| ||| |  ||||||||| | ||| |||||||| | |||| ||||| |  ||| ||| || | ||    
T  37123592 ggagttaaacttatgattcataccatgaagttatggaaaaaaaagtgattgaatgaagactaagaaaagagactcaagttattgttaatcaaattggttt 37123691  T
Q  112 tatgcctgggaggtcgactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgat 211  Q
    ||||| || || |||||| || |||||||||||||||||   |||||||| ||| | |||  | |  |||||||||||| | ||||||||||||||||||    
T  37123692 tatgcttgagatgtcgaccatagaagtgatctacttactacaacgtatga-ggagcgataacgaatggataaaaaagatgtgcacttagttttcattgat 37123790  T
Q  212 ttggagaa 219  Q
    ||||||||    
T  37123791 ttggagaa 37123798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 22832141 - 22832091
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaa 77  Q
    |||||||||||| |||||||||||||| |||||||||| | ||| ||||||    
T  22832141 tgagtcataccatgaagttatgggaaaaagtgattgaatgaagactaagaa 22832091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 38849137 - 38849332
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||||||||||||||||||||||| ||  |||||||| | ||||| |||||  ||||| |||||   |||||||||||||||||    
T  38849137 tgagtcataccatgaagttatgggaaagagtgattgaacgaaggctaagaaaagagactcgggttacagataactaattttcttttatgcctgggaggtc 38849236  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    ||||||||||| | ||||||||||| ||||  ||| |||   || | |||| ||||||||| |  |||||||||||||||||||||||||||||||    
T  38849237 gactatggaagcggtctacttactttgacgcttgacggagtgatgtcggacggataaaaaacacttacacttagttttcattgatttggagaaggc 38849332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 51448956 - 51448761
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    ||||||||||||  |||||||||||||| ||||| ||| | ||| |||||||  | |||||||||||  ||||||||||| | ||||| |||||||||||    
T  51448956 tgagtcataccataaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaatttggttttatacctgggaggtc 51448857  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    |||||||||||  ||||| |||||| ||||  ||||||| | |||| |||| |||||||||||  | ||||||||||||||||||||||| |||||    
T  51448856 gactatggaagcaatctatttacttcgacgcgtgatggagcgatatcggacggataaaaaagacttgcacttagttttcattgatttggaaaaggc 51448761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 52137863 - 52138058
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||||||||||| ||||| ||| | ||| | |||||  | | |||||||||  ||||||||||| | |||||||||||||||||    
T  52137863 tgagtcataccatgaagttatgggaaagggtgatcgaaagaagactcagaaaggagattcgagttacggataaccaatttggttttatgcctgggaggtc 52137962  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    || |||| |||  |||||||||||| ||||  ||||||| | |||| ||||||||||||||||  | ||||||||||||||||||||||| |||||    
T  52137963 gaatatgaaagcaatctacttacttcgacgcgtgatggagcgatatcggacagataaaaaagacttgcacttagttttcattgatttggaaaaggc 52138058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 31 - 217
Target Start/End: Original strand, 3368802 - 3368989
Alignment:
Q  31 tcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtcgact 130  Q
    |||||||| ||||||||||||||  ||||||||||| ||| |||||||| | |||||||||||||||||  ||||||| | | ||| || ||| ||||||    
T  3368802 tcataccatgaagttatgggaaaatgtgattgaacgaagactaagaaaagagactcgagttacttataattaatttagttatttgcttgtgagatcgact 3368901  T
Q  131 atggaagtgatctacttacttagacgtatgatggaacaatattggacagat-aaaaaagatatacacttagttttcattgatttggag 217  Q
    ||| |||| |||||| ||||| |||| |||||||| ||||||  ||| ||| ||||||||  | |||||||||||| |||||||||||    
T  3368902 atgaaagttatctacctacttcgacgcatgatggagcaatatcagacggataaaaaaagacttgcacttagttttctttgatttggag 3368989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 27 - 165
Target Start/End: Original strand, 27916613 - 27916749
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||||| ||||| ||||||||||| ||| |||||||| | || | ||||| | ||||||||||| | |||||| ||   |||||    
T  27916613 tgagtcataccatgaagttatgagaaagggtgattgaacgaagaataagaaaagagacccaagttagtgataaccaatttggttttatgtct--aaggtc 27916710  T
Q  127 gactatggaagtgatctacttacttagacgtatgatgga 165  Q
    ||| ||||| ||||| |||||||||  |||| |||||||    
T  27916711 gaccatggatgtgatttacttacttccacgtgtgatgga 27916749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 222
Target Start/End: Complemental strand, 50630562 - 50630371
Alignment:
Q  31 tcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtcgact 130  Q
    ||||| || |||||||| ||||||||||||||||| ||||  || |||| | |  | |||| || |||||||||||   ||||||| || |||||||||     
T  50630562 tcatatcatgaagttattggaaagagtgattgaactgagaccaaaaaaagagatgcaagttgctgataaccaatttgattttatgcttgcgaggtcgacc 50630463  T
Q  131 atggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    |||||||  ||||||||||    || | ||||||| || |||  ||  |||||||||||  | |||||||||||||||||||||||||||||    
T  50630462 atggaagcaatctacttaccacaacatgtgatggagcagtataagatggataaaaaagacttgcacttagttttcattgatttggagaaggc 50630371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 219
Target Start/End: Original strand, 48220917 - 48221008
Alignment:
Q  129 ctatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaa-gatatacacttagttttcattgatttggagaa 219  Q
    |||| |||| ||||||||||| | ||||||||||||||| |||   |||| |||||||| ||  | ||||||||||||||||||||||||||    
T  48220917 ctatagaagagatctacttacctcgacgtatgatggaacgataacagacaaataaaaaaagacttgcacttagttttcattgatttggagaa 48221008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 452863 - 452668
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||||||| | ||||| ||||| ||| | ||| |||||||  | |||||||||||  ||||||||||| | |||||||||||||||||    
T  452863 tgagtcataccatgaagttacgagaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaatttggttttatgcctgggaggtc 452764  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    |||||||||||  |||||||||||| ||||  ||||||| | |||| |||| |||||||||||  | ||||||||||||||||||||||| |||||    
T  452763 gactatggaagcaatctacttacttcgacgcgtgatggagcgatatcggacggataaaaaagacttgcacttagttttcattgatttggaaaaggc 452668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 29 - 216
Target Start/End: Original strand, 8179830 - 8180017
Alignment:
Q  29 agtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtcga 128  Q
    |||||||||| ||||||||||||||| ||||| ||| | ||| |||||||  | |||||||||||  ||||||||||| | |||||||||||||||||||    
T  8179830 agtcataccatgaagttatgggaaagggtgatcgaaagaagactaagaaaggagactcgagttacggataaccaatttggttttatgcctgggaggtcga 8179929  T
Q  129 ctatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttgga 216  Q
    ||||| |||  |||||||||||| ||||  ||||||| | |||| |||| |||||||||||  | ||||| |||||||||||||||||    
T  8179930 ctatgaaagcaatctacttactttgacgcgtgatggagcgatatcggacggataaaaaagacttgcacttggttttcattgatttgga 8180017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 45368873 - 45368678
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||||||| ||| ||||||||||| || |||||||| ||| |||||||| | ||||  |||||  ||||||||||| | ||||||||||||||||     
T  45368873 tgagtcataccatgaaattatgggaaagggtaattgaacgaagactaagaaaagagactcatgttacggataaccaatttggctttatgcctgggaggtt 45368774  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    ||||||||||| ||| ||||||||| ||||  ||||||| | |||| |||| ||||||||  |  |||||||||||||||||||||| ||||||||    
T  45368773 gactatggaagcgatatacttacttcgacgcgtgatggagcgatatcggacggataaaaagaacttacacttagttttcattgattttgagaaggc 45368678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 27 - 222
Target Start/End: Complemental strand, 24584856 - 24584658
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgatt---gaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggag 123  Q
    |||||||||||| ||||||||||||||| ||||||   ||||  ||| |||||||  | ||||||||||   |||||  |||| | |||||| |||||||    
T  24584856 tgagtcataccatgaagttatgggaaagggtgattattgaacaaagactaagaaaggagactcgagttatagataactgatttggttttatgtctgggag 24584757  T
Q  124 gtcgactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    ||||| |||||||| ||||||||||||| ||||  ||||||| | |||| |||| |||||||||||  ||||| || ||||||||||||||||||||||    
T  24584756 gtcgagtatggaagcgatctacttacttcgacgcgtgatggagcgatatcggacggataaaaaagacttacacctaattttcattgatttggagaaggc 24584658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 165
Target Start/End: Original strand, 13148336 - 13148494
Alignment:
Q  8 attatagaggagttaaact--tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatt 105  Q
    ||||||| ||| |||||||  |||||| ||||| ||||||||||||||| ||||||||| | ||| |||||||| | ||||||||||   ||||||||||    
T  13148336 attataggggaattaaactaatgagtcttaccatgaagttatgggaaagggtgattgaatgaagactaagaaaagagactcgagttatcgataaccaatt 13148435  T
Q  106 tagatttatgcctgggaggtcgactatggaagtgatctacttacttagacgtatgatgga 165  Q
    |   ||||||||| ||  ||| |||||||||| ||||||||||||| | |||||||||||    
T  13148436 tgattttatgcctagg-tgtcaactatggaagcgatctacttacttcggcgtatgatgga 13148494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 31 - 163
Target Start/End: Original strand, 37281145 - 37281277
Alignment:
Q  31 tcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtcgact 130  Q
    |||||||| |||||||||  ||| |||||||||||| ||| |||| ||| | |||  ||||||| ||||||||||| | ||||| |||| || |||||||    
T  37281145 tcataccatgaagttatgataaaaagtgattgaacgaagactaagtaaacaaacttaagttactgataaccaatttggttttatacctgagaagtcgact 37281244  T
Q  131 atggaagtgatctacttacttagacgtatgatg 163  Q
    || |||||||||||||||||| ||||| |||||    
T  37281245 atagaagtgatctacttactttgacgtgtgatg 37281277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 222
Target Start/End: Original strand, 33251350 - 33251545
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    |||||||| ||| |||| ||||| |||  ||||||||||| ||| ||| ||||   | |||||||||||||||||||| | | |||||||| |  |||||    
T  33251350 tgagtcatcccatgaagctatggaaaatggtgattgaacgaagactaaaaaaagtgattcgagttacttataaccaatctggttttatgcccgaaaggtc 33251449  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
      |||||||||| ||||| |||||| ||||| ||||||| | |||| | |   |||||||||||   ||| |||||||||||||||| ||||||||    
T  33251450 ttctatggaagttatctaattacttcgacgtgtgatggagcgatatcgtatgtataaaaaagattgtcacctagttttcattgatttcgagaaggc 33251545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 27 - 172
Target Start/End: Complemental strand, 7789722 - 7789577
Alignment:
Q  27 tgagtcataccaagaagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtc 126  Q
    ||||||||||||  || |||||| |||||||||||||||  ||| ||| |||| | |||||||||||| |||| |||||| | ||||||  ||| |||||    
T  7789722 tgagtcataccattaaattatggaaaagagtgattgaacaaagattaacaaaagagactcgagttactcataatcaatttggttttatgtttggaaggtc 7789623  T
Q  127 gactatggaagtgatctacttacttagacgtatgatggaacaatat 172  Q
     || ||| || |||||||||||||  || | |||||||| ||||||    
T  7789622 aaccatgaaaatgatctacttactatgaagcatgatggagcaatat 7789577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 220
Target Start/End: Original strand, 14769369 - 14769528
Alignment:
Q  56 gtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcct-gggaggtcgactatggaag--tgatctacttactta 152  Q
    |||||| || ||||| |||||||| | ||| || ||||| ||||||||||| | ||||||  | |||||||| ||||||||||  |||||||||||        
T  14769369 gtgatttaatggagactaagaaaagagacttgatttactgataaccaatttggttttatgttttgggaggtcaactatggaagcgtgatctactta---- 14769464  T
Q  153 gacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaag 220  Q
        | ||||||||| ||||||||  |||||||||||  | ||||| |||||||||||||||||||||    
T  14769465 ----tctgatggaacgatattggatggataaaaaagacttgcacttggttttcattgatttggagaag 14769528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 2609695 - 2609758
Alignment:
Q  159 tgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    ||||||| | |||| |||| |||||||||||  | ||||||||||||||||||||||| |||||    
T  2609695 tgatggatcgatatcggacggataaaaaagacttgcacttagttttcattgatttggaaaaggc 2609758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 44 - 222
Target Start/End: Original strand, 30520 - 30698
Alignment:
Q  44 ttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtcgactatggaagtgatct 143  Q
    ||||||||||| ||||||||| | ||| |||||||  | |||||||||||  ||||||||||| | ||||||||||||||||||||||||||||  ||||    
T  30520 ttatgggaaagggtgattgaaagaagactaagaaaggagactcgagttacggataaccaatttggttttatgcctgggaggtcgactatggaagcaatct 30619  T
Q  144 acttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    ||||||||  |||  ||||| | | ||||  ||| |||||||||||  | ||||||||||||||||| ||||| |||||    
T  30620 acttacttcaacgcgtgatgaagcgatatcagacggataaaaaagacttgcacttagttttcattgaattggaaaaggc 30698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 222
Target Start/End: Complemental strand, 90292 - 90142
Alignment:
Q  72 taagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtcgactatggaagtgatctacttacttagacgtatgatggaacaata 171  Q
    |||||||| | |||||||||||  |||||||||||   |||||||| |||||||| ||||||||||||||||||||| || ||| | || | || |  ||    
T  90292 taagaaaagagactcgagttacggataaccaatttgattttatgccagggaggtcaactatggaagtgatctacttaattcgacatgtggtcgagcgtta 90193  T
Q  172 ttggacagataaaaaagatatacacttagttttcattgatttggagaaggc 222  Q
    | |||| |||||||||||  |||||||||||||||||||||||||||||||    
T  90192 tcggacggataaaaaagacttacacttagttttcattgatttggagaaggc 90142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 5568 - 5677
Alignment:
Q  113 atgcctgggaggtcgactatggaagtgatctacttacttagacgtatgatggaacaatattggacagataaaaaagatatacacttagttttcattgatt 212  Q
    |||| ||||||||||| ||| |||| ||| | |||||||| |||| ||||||| | ||||| ||| ||||||||| |    ||||||||||||||| |||    
T  5568 atgcatgggaggtcgaatatcgaagcgatttccttacttaaacgtgtgatggagcgatatttgactgataaaaaacaatcgcacttagttttcatttatt 5667  T
Q  213 tggagaaggc 222  Q
    ||||||||||    
T  5668 tggagaaggc 5677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0073 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0073
Description:

Target: scaffold0073; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 149
Target Start/End: Complemental strand, 20538 - 20430
Alignment:
Q  41 aagttatgggaaagagtgattgaacggagagtaagaaaaaatactcgagttacttataaccaatttagatttatgcctgggaggtcgactatggaagtga 140  Q
    |||||||||  ||||||||||||||||||| || | ||| | ||| ||| |||| |||| |||||||| ||| ||  |  ||||||||||||| ||||||    
T  20538 aagttatggacaagagtgattgaacggagactagggaaatagactagagctactaataatcaatttagttttgtgtttaagaggtcgactatgaaagtga 20439  T
Q  141 tctacttac 149  Q
    || ||||||    
T  20438 tccacttac 20430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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