View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19677_low_2 (Length: 476)
Name: NF19677_low_2
Description: NF19677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19677_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 20 - 466
Target Start/End: Complemental strand, 55341498 - 55341052
Alignment:
| Q |
20 |
gtgctgaatatgctcatgaggtgaaaagtagtatggcctctgctttaatgctggtgatatgtattgtgtctgttctggtttttgtctttttgatgctaac |
119 |
Q |
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| T |
55341498 |
gtgctgaatatgctcatgaggtgaaaagtagtatggcctctgctttaatgctggtgatatgtattgtgtctgttctggtttttgtctttttgatgctaac |
55341399 |
T |
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| Q |
120 |
cactgtgctcaaagttgagaagctgctgcataaaaaagctcctagtaaatgaattatgatgtctctaatccaaaaactggatagttatataatgaaatgg |
219 |
Q |
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| T |
55341398 |
cactgtgctcaaagttgagaagctgctgcataaaaaagctcctagtaaatgaattatgatgtctctaatccaaaaactggttagttatataatgaaatgg |
55341299 |
T |
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| Q |
220 |
atgcagagctggcctaattcctttctttccattggaaggaagcaaatgaaagtagaccaacttgtctgaatatactttaccctttactcttttttccaaa |
319 |
Q |
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| T |
55341298 |
atgccgagctggcctaactcctttctttccattggaaggaagcaaatgaaagtagaccaacttgtctgaatatactttaccctttactcttctttccaaa |
55341199 |
T |
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| Q |
320 |
ttgtcttcatgaagcatgtatgatttggataaaaaggacaattggaaaattataaatagtagtatcaaacaaactaagacaagcaaaagtgtataagcac |
419 |
Q |
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| T |
55341198 |
ttgtcttcatgaagcatgtatgatttggataaaaaggactattggaaaattataaatattagtatcaaacaaactaagacaagcaaaagtgtataagcac |
55341099 |
T |
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| Q |
420 |
atgagttgagtataattggtttggacaatataaacttctcacctatg |
466 |
Q |
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| T |
55341098 |
atgagttgagtataattggtttggacaatataaacttctcacttatg |
55341052 |
T |
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