View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19677_low_4 (Length: 399)
Name: NF19677_low_4
Description: NF19677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19677_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 17 - 391
Target Start/End: Original strand, 43550598 - 43550972
Alignment:
| Q |
17 |
caaatctttccctgatgactcaagtgaaaccaacttcatctccaacgcctctcgtatacaatgataccgcatctctatgctttgacctgaaattttacaa |
116 |
Q |
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| T |
43550598 |
caaatctttccctgatgactcaagtgaaaccaacttcatctccaacgcctctcgtatacaatgataccgcatctctatgctttgacctgaaattttacaa |
43550697 |
T |
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| Q |
117 |
agcagataacaagaactaaccagtgtcaagcagacactcaggcctcgttgaaaacacaattcctgctgcaatagaatcttacgtttgatctgatcattta |
216 |
Q |
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| T |
43550698 |
agcagataacaagaactaaccagtgtcaagcagacactcaggcctcgttgaaaacacaattcctgctgcaatagaatcttacgtttgatctgatcattta |
43550797 |
T |
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| Q |
217 |
gataattgaggtaagacaagtttaactaatatttaattagttcatgtagcagctatttgtttggttgtagtgcaggtttggtttattttaccttgcagct |
316 |
Q |
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| T |
43550798 |
gataattgaggtaagacaagtttaactaatatttaattagttcatgtagcagctatttgtttggttgtagtgcaggtttggtttattttaccttgcagct |
43550897 |
T |
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| Q |
317 |
gttgtcaaatgtattgagttgtaggagttgggtagtttcttttgggttcgattttgtttttggttgtcctttgct |
391 |
Q |
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| T |
43550898 |
gttgtcaaatgtattgagttgtaggagatgggtagtttcttttgggttcgattttgtttttggttgtcccttgct |
43550972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 112
Target Start/End: Complemental strand, 17737871 - 17737792
Alignment:
| Q |
35 |
ctcaagtgaaaccaacttcatctccaacgcctctcgtatacaatgataccgcatctc--tatgctttgacctgaaatttt |
112 |
Q |
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|||||||||| |||||||||||||||||||||| |||||||||||||||||| ||| |||||||| ||||||| |||| |
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| T |
17737871 |
ctcaagtgaacacaacttcatctccaacgcctcttgtatacaatgataccgcaactcaatatgcttttacctgaattttt |
17737792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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