View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19677_low_5 (Length: 357)
Name: NF19677_low_5
Description: NF19677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19677_low_5 |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 11 - 357
Target Start/End: Original strand, 3208407 - 3208753
Alignment:
| Q |
11 |
atcatcacttgtattaattgaacctgcatacacaagtggcaataatgtcgatgcaaagtcttttggttggaaaactgattctccaagatattctgtcccg |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208407 |
atcatcacttgtattaattgaacctgcatacacaagtggcaataatgtcgatgcaaagtcttttggttggaaaactgattctccaagatattctgtcccg |
3208506 |
T |
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| Q |
111 |
tcgccaagcttagctactgcctcaatttttctgtcaattgtgctggcaccaacagttagaatccatggtgcttcattagacaaagtaccataaaaaggac |
210 |
Q |
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| T |
3208507 |
tcgccaagcttagctactgcctcaatttttctgtcaattgtgctggcaccaacagttagaatccatggtgcttcattagacaaagtaccataaaaaggac |
3208606 |
T |
|
| Q |
211 |
ctgaatttgcagctgaacaactaacaaaaatccccttttgaattgcactaaatgcaccaagtgcaattccatcttcaaagaaaggagaggagggtcctcc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208607 |
ctgaatttgcagctgaacaactaacaaaaatccccttttgaattgcactaaatgcaccaagtgcaattccatcttcaaagaaaggagaggagggtcctcc |
3208706 |
T |
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| Q |
311 |
gagggagagagaaagtacatcaacatcatcatcaactgcagcatcca |
357 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3208707 |
gagggagagagaaagtacatcaacatcatcatcaactgcagcatcca |
3208753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 11 - 357
Target Start/End: Original strand, 3202433 - 3202779
Alignment:
| Q |
11 |
atcatcacttgtattaattgaacctgcatacacaagtggcaataatgtcgatgcaaagtcttttggttggaaaactgattctccaagatattctgtcccg |
110 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
3202433 |
atcatcacttgtgttaattgcacctgcatacacaagtggcaataatgttgatgcaaagtcttttggttggaaaactgattctccgagatattccgtccca |
3202532 |
T |
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| Q |
111 |
tcgccaagcttagctactgcctcaatttttctgtcaattgtgctggcaccaacagttagaatccatggtgcttcattagacaaagtaccataaaaaggac |
210 |
Q |
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| T |
3202533 |
tccccaagcttagctactgcctctatttttctgtcaattgtgctggcaccaacagttaaaatccatggtgcttcattagccaatgtaccatgaaaaggac |
3202632 |
T |
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| Q |
211 |
ctgaatttgcagctgaacaactaacaaaaatccccttttgaattgcactaaatgcaccaagtgcaattccatcttcaaagaaaggagaggagggtcctcc |
310 |
Q |
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|||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||| ||| |
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| T |
3202633 |
ctgaatttccagcagaacaactaacaaaaattcccttttgaattgcactaaatgcaccaagtgcaattccactttcaaagaaagaagtagagggttgtcc |
3202732 |
T |
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| Q |
311 |
gagggagagagaaagtacatcaacatcatcatcaactgcagcatcca |
357 |
Q |
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| T |
3202733 |
aagggagagagaaagaacatcaacaccatcatcaacagcaacatcca |
3202779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 14 - 357
Target Start/End: Original strand, 3216349 - 3216692
Alignment:
| Q |
14 |
atcacttgtattaattgaacctgcatacacaagtggcaataatgtcgatgcaaagtcttttggttggaaaactgattctccaagatattctgtcccgtcg |
113 |
Q |
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||||||| |||||| ||||||||||||||||||||||| | ||| |||||||| ||||||||||| || ||||||||||||| ||||| | ||||| | |
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| T |
3216349 |
atcacttatattaacagaacctgcatacacaagtggcaacagtgttgatgcaaactcttttggttgaaacactgattctccaatatatttttccccgttg |
3216448 |
T |
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| Q |
114 |
ccaagcttagctactgcctcaatttttctgtcaattgtgctggcaccaacagttagaatccatggtgcttcattagacaaagtaccataaaaaggacctg |
213 |
Q |
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||||| ||||||| ||| || |||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
3216449 |
ccaagtttagctattgcttctatttttctatcagttgtgctagcaccaacagttagaatccatggtgcttcattagacgttgtaccataatcaggaccaa |
3216548 |
T |
|
| Q |
214 |
aatttgcagctgaacaactaacaaaaatccccttttgaattgcactaaatgcaccaagtgcaattccatcttcaaagaaaggagaggagggtcctccgag |
313 |
Q |
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| T |
3216549 |
aatttccagctgagcaactaacgaaaattcccttttgatttgcactaaatgcaccaagtgcaattacatcttcaaagaaagggttggtgggtccgttaag |
3216648 |
T |
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| Q |
314 |
ggagagagaaagtacatcaacatcatcatcaactgcagcatcca |
357 |
Q |
| |
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||||| ||||||||||||||| | || |||||||||||||||| |
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| T |
3216649 |
ggagattgaaagtacatcaacaccgtcttcaactgcagcatcca |
3216692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 133 - 292
Target Start/End: Original strand, 3226373 - 3226532
Alignment:
| Q |
133 |
caatttttctgtcaattgtgctggcaccaacagttagaatccatggtgcttcattagacaaagtaccataaaaaggacctgaatttgcagctgaacaact |
232 |
Q |
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|||||||||||||||||||||| ||||||||||| || ||||| || |||||||| || | ||| | ||| |||||| || |||||||| || ||||| |
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| T |
3226373 |
caatttttctgtcaattgtgctagcaccaacagtgaggatccaaggagcttcattggagagagtgctatatccaggaccagagtttgcagcagagcaact |
3226472 |
T |
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| Q |
233 |
aacaaaaatccccttttgaattgcactaaatgcaccaagtgcaattccatcttcaaagaa |
292 |
Q |
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| T |
3226473 |
aacaaaaacaccattttgagttgcagcaaaagcaccaattgcaattgggtcttcaaagaa |
3226532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 292
Target Start/End: Original strand, 3221391 - 3221550
Alignment:
| Q |
133 |
caatttttctgtcaattgtgctggcaccaacagttagaatccatggtgcttcattagacaaagtaccataaaaaggacctgaatttgcagctgaacaact |
232 |
Q |
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|||||||||| ||||||||||||||||||||||| || | ||| || |||||||| || | ||| | || |||||| || |||||||| || ||||| |
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| T |
3221391 |
caatttttctatcaattgtgctggcaccaacagtgaggacccaaggagcttcattggagagagtgctgtatccaggaccggagtttgcagcagagcaact |
3221490 |
T |
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| Q |
233 |
aacaaaaatccccttttgaattgcactaaatgcaccaagtgcaattccatcttcaaagaa |
292 |
Q |
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| T |
3221491 |
aacaaaaacaccattttgagtagcagcaaaagcaccaattgcaattgggtcttcaaagaa |
3221550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 133 - 292
Target Start/End: Original strand, 3231624 - 3231783
Alignment:
| Q |
133 |
caatttttctgtcaattgtgctggcaccaacagttagaatccatggtgcttcattagacaaagtaccataaaaaggacctgaatttgcagctgaacaact |
232 |
Q |
| |
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|||||||||| ||||||||||| ||||||||||| || ||||| || |||||||| || | ||| | || |||||| || |||||||| || ||||| |
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| T |
3231624 |
caatttttctatcaattgtgcttgcaccaacagtgaggatccaaggagcttcattggaaagagtgctgtatccaggaccagagtttgcagcagagcaact |
3231723 |
T |
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| Q |
233 |
aacaaaaatccccttttgaattgcactaaatgcaccaagtgcaattccatcttcaaagaa |
292 |
Q |
| |
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|||||||| || |||||| | ||| ||| ||||||| ||||||| ||||||||||| |
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| T |
3231724 |
aacaaaaacaccattttgagtagcagcaaaagcaccaattgcaattgggtcttcaaagaa |
3231783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 3178415 - 3178363
Alignment:
| Q |
135 |
atttttctgtcaattgtgctggcaccaacagttagaatccatggtgcttcatt |
187 |
Q |
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|||||||||||||||||||| ||||| ||||| || ||||| || |||||||| |
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| T |
3178415 |
atttttctgtcaattgtgcttgcacctacagtgaggatccaaggagcttcatt |
3178363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 187
Target Start/End: Original strand, 3240425 - 3240477
Alignment:
| Q |
135 |
atttttctgtcaattgtgctggcaccaacagttagaatccatggtgcttcatt |
187 |
Q |
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|||||||||||||||||||| ||||| ||||| || ||||| || |||||||| |
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| T |
3240425 |
atttttctgtcaattgtgcttgcacctacagtgaggatccaaggagcttcatt |
3240477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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