View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19677_low_8 (Length: 322)
Name: NF19677_low_8
Description: NF19677
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19677_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 46353526 - 46353221
Alignment:
| Q |
1 |
cacttaaacaatgtttgagtaaaccattgttgaacctttttgcattttgaatatttgcatttttatcaccatctgttggccaaccaacttctccaattat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46353526 |
cacttaaacaatgtttgagtaaaccattgttgaacctttttgcattttgaatatttgcatttttatcaccatctgttggccaaccaacttctccaattat |
46353427 |
T |
|
| Q |
101 |
aacatgcatatctggataccctgctttctctaaagcatataaaagtgtatcaagatttgcatcaaaaacattagtgtaaagtaaattaccatccacaaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46353426 |
aacatgcatatctggataccctgctttctctaaagcatataaaagtgtatcaagatttgcatcaaaaacattagtgtaaagtaaattaccatccacaaga |
46353327 |
T |
|
| Q |
201 |
ggcttgttatttccgtcgaaaaacgcaaaatcgaaagggaaatgatcatttccatatagacttaagaagggatagatgttgacagtgaaaggcgcgttgt |
300 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46353326 |
ggcttgttatttccgtcgaaaaacgcgaaatcgaaagggaaatgatcatttccatatagacttaagaagggatagatgttgacagtgaaaggcgcgttgt |
46353227 |
T |
|
| Q |
301 |
tcgtgt |
306 |
Q |
| |
|
|||||| |
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| T |
46353226 |
tcgtgt |
46353221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 179
Target Start/End: Complemental strand, 51489871 - 51489835
Alignment:
| Q |
143 |
aagtgtatcaagatttgcatcaaaaacattagtgtaa |
179 |
Q |
| |
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| T |
51489871 |
aagtgtatcaaaatttgcatcaaaaacattggtgtaa |
51489835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 29 - 172
Target Start/End: Complemental strand, 22384822 - 22384679
Alignment:
| Q |
29 |
gttgaacctttttgcattttgaatatttgcatttttatcaccatctgttggccaaccaacttctccaattataacatgcatatctggataccctgctttc |
128 |
Q |
| |
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||||||||| |||||||||| ||| ||||| |||||||||||||||||||| |||||||| |||| | ||||||||| || ||||| |||||||| |
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| T |
22384822 |
gttgaacctctttgcatttttggcattagcattcttatcaccatctgttggccacccaacttcaccaactgtaacatgcaagtcaggataacctgctttt |
22384723 |
T |
|
| Q |
129 |
tctaaagcatataaaagtgtatcaagatttgcatcaaaaacatt |
172 |
Q |
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|||||||| | | ||| ||||| |||||||||||||| ||||| |
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| T |
22384722 |
tctaaagcccacataagggtatccagatttgcatcaaacacatt |
22384679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 96
Target Start/End: Original strand, 10251452 - 10251507
Alignment:
| Q |
41 |
tgcattttgaatatttgcatttttatcaccatctgttggccaaccaacttctccaa |
96 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||| || ||||| |||| |
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| T |
10251452 |
tgcattttgaatatttgcatttttgtcaccatctgttggccaccctacttcaccaa |
10251507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 36 - 96
Target Start/End: Original strand, 43390832 - 43390892
Alignment:
| Q |
36 |
ctttttgcattttgaatatttgcatttttatcaccatctgttggccaaccaacttctccaa |
96 |
Q |
| |
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||||||||||| | || ||| |||||||||| |||||| ||||||||||||| ||| |||| |
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| T |
43390832 |
ctttttgcattgttaacattagcatttttattaccatcagttggccaaccaatttcaccaa |
43390892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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