View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19678_high_18 (Length: 454)
Name: NF19678_high_18
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19678_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 14 - 438
Target Start/End: Complemental strand, 30074220 - 30073794
Alignment:
| Q |
14 |
ttctatcgtgttatatctattattaaaaattnnnnnnnnn-ttagggaaaagtcatgtggggatttagccccacatagctcatatgtacatccgcccctg |
112 |
Q |
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| T |
30074220 |
ttctatcgtgttatatctattattaaaaatgaaaaaaaaaattagggaaaagtcatgtggggatttagccccacatagctcatatgtacatccgcccctg |
30074121 |
T |
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| Q |
113 |
tgaagagcacacgtctaaacattctatttgttggtatgcgcacacattagactcgaaatatctaaatcccacaacaatttattattgtgannnnnnnagg |
212 |
Q |
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| T |
30074120 |
tcaagagcacacgtctaaacattctatttgttggtatgcgcacacattagactcgaaatatctaaatcccacaacaatttattattgtgatttttttagg |
30074021 |
T |
|
| Q |
213 |
gatttatttataaaatacttcgggattcatttnnnnnnngaatcaaattttgtattccaaaaatgaatccaataaaaatgttgtaattaaacatataggt |
312 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
30074020 |
gatttatttataaaatacttcgggattcatttaaaaaaagaatcaaattttgtattccgaaaatgaatccaataaaaatgttgtaattaaacatataggt |
30073921 |
T |
|
| Q |
313 |
aattaattagaatttg-aatcccttattttggagtgatgtaatattttgatgattcggatcaatataccaatcattgatttcttcaatattttatgacaa |
411 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
30073920 |
aattaattagaatttgaaatcccttattttggagtgatgtaatattttgatgattcggatcaatataccaatcattgatttcttcaatattttatgacga |
30073821 |
T |
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| Q |
412 |
gtagtgagtgactttgagagagatttg |
438 |
Q |
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| T |
30073820 |
gtagtgagtgactttgagagagatttg |
30073794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 58 - 112
Target Start/End: Original strand, 3045239 - 3045293
Alignment:
| Q |
58 |
ggaaaagtcatgtggggatttagccccacatagctcatatgtacatccgcccctg |
112 |
Q |
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||||||| ||||||||| |||||||||||||||| |||||||||||||| ||||| |
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| T |
3045239 |
ggaaaaggcatgtggggctttagccccacatagcccatatgtacatccgtccctg |
3045293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 109
Target Start/End: Original strand, 5883019 - 5883074
Alignment:
| Q |
54 |
ttagggaaaagtcatgtggggatttagccccacatagctcatatgtacatccgccc |
109 |
Q |
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||||||||||| ||||||||| | |||||||||||||| ||||||||||||||||| |
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| T |
5883019 |
ttagggaaaaggcatgtggggttgtagccccacatagcccatatgtacatccgccc |
5883074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 55 - 109
Target Start/End: Original strand, 43145120 - 43145174
Alignment:
| Q |
55 |
tagggaaaagtcatgtggggatttagccccacatagctcatatgtacatccgccc |
109 |
Q |
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|||||||||| |||||| || |||||||||||||||| ||||||||||||||||| |
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| T |
43145120 |
tagggaaaagacatgtgaggctttagccccacatagcccatatgtacatccgccc |
43145174 |
T |
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