View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19678_high_24 (Length: 391)
Name: NF19678_high_24
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19678_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 31784532 - 31784173
Alignment:
| Q |
19 |
agaaagaaaaaacaaatattgcattgtttacactaacttctcgtccatgcgagtctgtgatttttcctgtcttgatggcttgagacagactgctttgagc |
118 |
Q |
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| T |
31784532 |
agaaagaaaaaacaaatattgcattgtttgcactaacttctcgtccatgcgagtctgtgatttttcctgtcttgatggcttgagacaaactgctttgagc |
31784433 |
T |
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| Q |
119 |
tactatatctgctttatcaacattttcaatgaaa-ccacagacaatggtttcttgtagcacttatctacgagaaaatcaaggtgagacttccctctgaat |
217 |
Q |
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||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
31784432 |
tactatatccgctttatcaacattttcaatgaaaaccacagacaatggtttcttgcagcactcatctacgagaaaatcaaggtgagacttccctctgaat |
31784333 |
T |
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| Q |
218 |
ttcacattgcatccattcatttctttggaactcagatccacaaaagtaaagttttcccggcttctatacagtaattcagcaagagaaacagcaattttct |
317 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
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| T |
31784332 |
ttcacattacatccattcatttctttggaactcagatccacaaaagtaaagttttcccggcttccatacagtaattcagctagagaaacagcaattttct |
31784233 |
T |
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| Q |
318 |
ttttaccatgcctatcgggtccaacaaaattcacccacttgtccccacgctgatttaacc |
377 |
Q |
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| T |
31784232 |
ttttaccatgcctatcgggtccaacaaaattcatccacttgtccccacgttgatttaacc |
31784173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 65 - 377
Target Start/End: Original strand, 19633725 - 19634038
Alignment:
| Q |
65 |
atgcgagtctgtgatttttcctgtcttgatggcttgagacagactgctttgagctactatatctgctttatcaacattttcaatgaaa-ccacagacaat |
163 |
Q |
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| T |
19633725 |
atgcgagtctgtgatttttcctgtcttgatggcttgagacaaactgctttgagctactatatcagctttatcaacattttcaatgaaaaccacagacaat |
19633824 |
T |
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| Q |
164 |
ggtttcttgtagcacttatctacgagaaaatcaaggtgagacttccctctgaatttcacattgcatccattcatttctttggaactcagatccacaaaag |
263 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19633825 |
ggtttcttgcagcactcatctacgagaaaatcaaggtgagacttccctctgaatttcacattgcatccattcatttctttggaactcagatccacaaaag |
19633924 |
T |
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| Q |
264 |
taaagttttcccggcttctatacagtaattcagcaagagaaacagcaattttctttttaccatgcctatcgggtccaacaaaattcacccacttgtcccc |
363 |
Q |
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| T |
19633925 |
taaagttttcccggcttccatacagtaattcagcaagagaaacaacaattttctttttaccatgcctatcgggtccaacaaaattcatccacttgtcccc |
19634024 |
T |
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| Q |
364 |
acgctgatttaacc |
377 |
Q |
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|||||||||||||| |
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| T |
19634025 |
acgctgatttaacc |
19634038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 19631843 - 19631893
Alignment:
| Q |
19 |
agaaagaaaaaacaaatattgcattgtttacactaacttctcgtccatgcg |
69 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
19631843 |
agaaagaaaaaacaaatagtacattgtttacactaacttctcgtccatgcg |
19631893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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