View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19678_high_28 (Length: 312)

Name: NF19678_high_28
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19678_high_28
NF19678_high_28
[»] chr6 (8 HSPs)
chr6 (116-240)||(26720060-26720184)
chr6 (1-88)||(26719945-26720032)
chr6 (129-217)||(27310811-27310899)
chr6 (129-217)||(27581746-27581834)
chr6 (129-233)||(27669616-27669719)
chr6 (129-189)||(27313261-27313321)
chr6 (185-229)||(28780832-28780876)
chr6 (129-157)||(26847943-26847971)
[»] scaffold0277 (2 HSPs)
scaffold0277 (185-233)||(5563-5611)
scaffold0277 (185-229)||(14082-14126)


Alignment Details
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 116 - 240
Target Start/End: Original strand, 26720060 - 26720184
Alignment:
Q  116 aagacattcataatcacattgctttacagaaattacatggaaagagcaggtagcaaaagtggtggttattttacagaggatagaaaatgagaaggaagtt 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26720060 aagacattcataatcacattgctttacagaaattacatggaaagagcaggtagcaaaagtggtggttattttacagaggatagaaaatgagaaggaagtt 26720159  T
Q  216 tccaacttggtaaaagtgcagattc 240  Q
    |||||||||||||||||||||||||    
T  26720160 tccaacttggtaaaagtgcagattc 26720184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 26719945 - 26720032
Alignment:
Q  1 ttagtgtttttaagctatatatatgatttttgagatccaatcacaatcacattatatctcctttcatgctgatggtgcttcccttaag 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26719945 ttagtgtttttaagctatatatatgatttttgagatccaatcacaatcacattatatctcctttcatgctgatggtgcttcccttaag 26720032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 27310899 - 27310811
Alignment:
Q  129 tcacattgctttacagaaattacatggaaagagcaggtagcaaaagtggtggttattttacagaggatagaaaatgagaaggaagtttc 217  Q
    ||||||||||||||||| ||||||||||||||| |||||| ||||||| ||||||||||||  | ||||| ||||  ||||||||||||    
T  27310899 tcacattgctttacagacattacatggaaagaggaggtagaaaaagtgatggttattttaccaaagataggaaataggaaggaagtttc 27310811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 129 - 217
Target Start/End: Complemental strand, 27581834 - 27581746
Alignment:
Q  129 tcacattgctttacagaaattacatggaaagagcaggtagcaaaagtggtggttattttacagaggatagaaaatgagaaggaagtttc 217  Q
    ||||||||||||||||| ||||||||||||||| |||||| ||||||| |||||||| || ||| ||||| ||||  ||||||||||||    
T  27581834 tcacattgctttacagacattacatggaaagaggaggtagaaaaagtgatggttattgtatagaagataggaaataggaaggaagtttc 27581746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 129 - 233
Target Start/End: Complemental strand, 27669719 - 27669616
Alignment:
Q  129 tcacattgctttacagaaattacatggaaagagcaggtagcaaaagtggtggttattttacagaggatagaaaatgagaaggaagtttccaacttggtaa 228  Q
    ||||||||||||| ||||||||||||||||||| ||| |  ||||||| ||||||||||| ||| ||||| ||||  ||||||||||||  || ||||||    
T  27669719 tcacattgctttagagaaattacatggaaagaggaggca-aaaaagtgatggttattttagagaagataggaaataggaaggaagtttcttacatggtaa 27669621  T
Q  229 aagtg 233  Q
    |||||    
T  27669620 aagtg 27669616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 189
Target Start/End: Complemental strand, 27313321 - 27313261
Alignment:
Q  129 tcacattgctttacagaaattacatggaaagagcaggtagcaaaagtggtggttattttac 189  Q
    ||||||||||||||||| | |||||| |||||| |||||| ||||||| ||||||||||||    
T  27313321 tcacattgctttacagacactacatgaaaagagaaggtagaaaaagtgatggttattttac 27313261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Original strand, 28780832 - 28780876
Alignment:
Q  185 tttacagaggatagaaaatgagaaggaagtttccaacttggtaaa 229  Q
    |||||||| ||||| ||||||||||||||||||| ||||||||||    
T  28780832 tttacagaagataggaaatgagaaggaagtttcccacttggtaaa 28780876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 26847943 - 26847971
Alignment:
Q  129 tcacattgctttacagaaattacatggaa 157  Q
    |||||||||||||||||||||||||||||    
T  26847943 tcacattgctttacagaaattacatggaa 26847971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 5611 - 5563
Alignment:
Q  185 tttacagaggatagaaaatgagaaggaagtttccaacttggtaaaagtg 233  Q
    |||||||| ||||| ||||||||||||||||||| ||||||||||||||    
T  5611 tttacagaagataggaaatgagaaggaagtttcccacttggtaaaagtg 5563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 229
Target Start/End: Complemental strand, 14126 - 14082
Alignment:
Q  185 tttacagaggatagaaaatgagaaggaagtttccaacttggtaaa 229  Q
    |||||||| ||||| ||||||||||||||||||| ||||||||||    
T  14126 tttacagaagataggaaatgagaaggaagtttcccacttggtaaa 14082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University