View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19678_high_40 (Length: 244)
Name: NF19678_high_40
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19678_high_40 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 244
Target Start/End: Original strand, 42083916 - 42084146
Alignment:
| Q |
17 |
tgtaataggggaagaaaaatagcatcaatttacaaatgatcatcctcgatcggatgacagacat----ttattcaaggatcatagtcatgcctcgtaagc |
112 |
Q |
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| T |
42083916 |
tgtaataggggtagaaaaatagcatcaatttacaaatgatcatccttgatcggatgacagacatggatttattcaaggatcatagtcatgcctcgtaagc |
42084015 |
T |
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| Q |
113 |
attgnnnnnnnnnncatgacgaattcatttgagaaaattgagagagaaaaaacacaaccatgttaacagatacagaaaattctcataaacgaaataaaga |
212 |
Q |
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| T |
42084016 |
att-ttttttttttcatgacgaattcatttgagaaaattgagagagaaaaaacacaaccatgttaacagatacagaaaattctcataaacgaaacaaaga |
42084114 |
T |
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| Q |
213 |
atataaccttaaattctcttttgagacgatca |
244 |
Q |
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| T |
42084115 |
atataaccttaaattctcttttgagacgatca |
42084146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 148 - 244
Target Start/End: Original strand, 42087755 - 42087853
Alignment:
| Q |
148 |
aattgagagaga-aaaaacacaaccatgttaacagatacagaaaa-ttctcataaacgaaataaagaatataaccttaaattctcttttgagacgatca |
244 |
Q |
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|||||||||||| ||||||||| ||||||||||||||| ||||| |||| | |||| |||||| || |||||||||| |||||||||||||||||||| |
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| T |
42087755 |
aattgagagagagaaaaacacagccatgttaacagatatcgaaaaattcttaaaaaccaaataatgattataaccttatattctcttttgagacgatca |
42087853 |
T |
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