View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19678_high_41 (Length: 238)
Name: NF19678_high_41
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19678_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 42084184 - 42084406
Alignment:
| Q |
1 |
tgatcgtccggtcctctttatcttgggatacgcggaaagaagggt--tcctctgcaagcttgattaaaccagcttccatcttctccatgtcagctttagt |
98 |
Q |
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| T |
42084184 |
tgatcgtccggtcctctttatcttgggatacgcggaaagaagggtcttcctctgcaagcttgattaaaccagcttccatcttctccatgtcagctttagt |
42084283 |
T |
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| Q |
99 |
tttgggttcaattgcaatcttaataacaggaacagggaagtccatctgatcaagcacgaatggacccttggggtcacacaacgtctcacctgctatagta |
198 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42084284 |
tttgggttcaattgcaatcttaataacatgaacagggaagtccatctgatcaagcacgaatggacccttggggtcacacaacgtctcacctgctatagta |
42084383 |
T |
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| Q |
199 |
tctttcaaaccaacaagagtaac |
221 |
Q |
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||||||||||||||||||||||| |
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| T |
42084384 |
tctttcaaaccaacaagagtaac |
42084406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 51 - 217
Target Start/End: Original strand, 42087946 - 42088112
Alignment:
| Q |
51 |
tgcaagcttgattaaaccagcttccatcttctccatgtcagctttagttttgggttcaattgcaatcttaataacaggaacagggaagtccatctgatca |
150 |
Q |
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||||||||||| |||||||||| ||||||| || || ||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| | ||| |
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| T |
42087946 |
tgcaagcttgactaaaccagctgccatcttgtcaatatcagctttagttttgggttcaattgcaatcttaatcacaggatcagggaagtccatccgctca |
42088045 |
T |
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| Q |
151 |
agcacgaatggacccttggggtcacacaacgtctcacctgctatagtatctttcaaaccaacaagag |
217 |
Q |
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| T |
42088046 |
agcacgaccggactctcggggtcacacaacgtttcacctgttatagtatctttcaaaccagcaagag |
42088112 |
T |
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