View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19678_high_43 (Length: 223)
Name: NF19678_high_43
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19678_high_43 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 4766265 - 4766043
Alignment:
| Q |
1 |
ttgttgccattgctacatcttctgggctgtcttcgttgtcgactgttttccacttgacctaagtaaaaaatacgcacactctccaccgcacgccgtcgcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4766265 |
ttgttgccattgctacatcttctgggctgtcttcgttgtcgactgttttccacttgacctaagtaaaaaatacgcacactctccaccgcacgccgtcgcc |
4766166 |
T |
|
| Q |
101 |
tcccgtttctcactcgtcggcgttacttcgtcgagcttattcctccgacatcacctctcgttttggttaattaagtgagtatttataaattctacacctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4766165 |
tcccgtttctcactcgtcggcgttacttcgtcgagcttattcctccgacatcacctctcgttttggttaattaagtgagtatttataaattctacacctt |
4766066 |
T |
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| Q |
201 |
cctcattcatctatctccctctt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
4766065 |
cctcattcatctatctccctctt |
4766043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 8e-51; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 43 - 222
Target Start/End: Original strand, 11667767 - 11667945
Alignment:
| Q |
43 |
ctgttttccacttgacctaagtaaaaaatacgcacactctccaccgcacgccgtcgcctcccgtttctcactcgtcggcgttacttcgtcg-agcttatt |
141 |
Q |
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|||||| ||||||| ||||||| |||||||||||| ||| |||||||||||||||| |||| |||||||||||||||||||||| |||| ||||| | |
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| T |
11667767 |
ctgtttcccacttgccctaagtcaaaaatacgcac--tctgcaccgcacgccgtcgcttcccatttctcactcgtcggcgttactccgtcatagcttctg |
11667864 |
T |
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| Q |
142 |
cctccgacatcacctctcgttttggttaattaagtgagtatttataaattctacaccttcctcattcatctatctccctct |
222 |
Q |
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| T |
11667865 |
cctccggcaccacctctcgttttggttgattaagtgagtatttataaattctataacttcctcattcatctatctccctct |
11667945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 11675241 - 11675092
Alignment:
| Q |
44 |
tgttttccacttgacctaagtaaaaaatacgcacactctccaccgcacgccgtcgcctcccgtttctcactcgtcggcgttacttcgtcg-agcttattc |
142 |
Q |
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||||| ||||||| ||||||| |||||||||||| ||| ||||||| |||||||| ||||||||||||||||||||||||||| |||| ||||| | | |
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| T |
11675241 |
tgtttcccacttgccctaagtcaaaaatacgcac--tctgcaccgcaagccgtcgcttcccgtttctcactcgtcggcgttactccgtcatagcttctgc |
11675144 |
T |
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| Q |
143 |
ctccgacatcacctctcgttttggttaattaagtgagtatttataaattcta |
194 |
Q |
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||||| || ||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
11675143 |
ctccggcaccacctctcgttttggttaattaattgagtatttataaattcta |
11675092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 186 - 222
Target Start/End: Complemental strand, 11674694 - 11674658
Alignment:
| Q |
186 |
taaattctacaccttcctcattcatctatctccctct |
222 |
Q |
| |
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||||||||| | ||||||||||||||||||||||||| |
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| T |
11674694 |
taaattctataacttcctcattcatctatctccctct |
11674658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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