View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19678_high_6 (Length: 779)

Name: NF19678_high_6
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19678_high_6
NF19678_high_6
[»] chr3 (3 HSPs)
chr3 (13-383)||(39141720-39142092)
chr3 (494-765)||(39141315-39141587)
chr3 (443-483)||(39141612-39141654)


Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-151; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 13 - 383
Target Start/End: Complemental strand, 39142092 - 39141720
Alignment:
Q  13 aatatcaactaattttaactat----aacaatgtttaacaagtttaaagtgtaaataacatttccgacttgaaatgagaaatacaatctaagataaagaa 108  Q
    ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39142092 aatatcaactaattttaactatcttaaacaatgtttaacaagtttaaagtgtaaataacatttccgacttgaaatgagaaatacaatctaagataaagaa 39141993  T
Q  109 aatataattcaacagaatagtggaaattacaagtatgtaatcacatctcttatnnnnnnnnnnnnnnnnnggttgcattcacattcacatcaactacata 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||    
T  39141992 aatataattcaacagaatagtggaaattacaagtatgtaatcacatctcttat------aaaaaaaaaaaggttgcattcacattcacatcaactacata 39141899  T
Q  209 agaaaaagtcgatgaaaatagtggcggcgatcaaaggtactagactcctaaatatctacaccatacttccaaatcccttgactttcttattgtgaatcta 308  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  39141898 agaaaaagtcgatgaaaatagtggcggcgatcaaaggtacttgactcctaaatatctacaccatacttccaagtcccttgactttcttattgtgactcta 39141799  T
Q  309 caagt-at---acctgtgcgtttcgttcatttactttgaattgcaaatcacctccataccatgataaatattgatttgc 383  Q
    ||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39141798 caagtgatctaacctgtgcgtttcgttcatttactttgaattgcaaatcacctccataccatgataaatattgatttgc 39141720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 494 - 765
Target Start/End: Complemental strand, 39141587 - 39141315
Alignment:
Q  494 cgtgaattttagaatagaattacaaattataaacatcaaacctgaaaaattatatcatataaaacctacgttcaaccnnnnnnn-tactaaattaagaac 592  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||        |||||||||||||||    
T  39141587 cgtgaattttagaatagaattacaaattataaacattaaacctaaaaaattatatcatataaaacctacgttcaaccaaaaaaaatactaaattaagaac 39141488  T
Q  593 tccaactctaaatttgagagaccatcaaaaactaaactaggcgaataaagcttatccatcacaatgttaggatgttctcagacaacgggagcaacgtcag 692  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39141487 tccaactctaaatttgagagaccatcaaatactaaactaggcgaataaagcttatccatcacaatgttaggatgttctcggacaacgggagcaacgtcag 39141388  T
Q  693 gctaatgatgagaatcatcaagaaattgagatatcatagctctactcaaaattttaaagcatttagtatatga 765  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  39141387 gctaatgatgagaatcatcaagaaattgagacatcatagcactactcaaaattttaaagcatttagtatatga 39141315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 483
Target Start/End: Complemental strand, 39141654 - 39141612
Alignment:
Q  443 gttcatatataatgcgaatga--taaattttatgttaaacaca 483  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  39141654 gttcatatataatgcgaatgaaataaattttatgttaaacaca 39141612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University