View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19678_low_1 (Length: 1106)
Name: NF19678_low_1
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19678_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 851; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 851; E-Value: 0
Query Start/End: Original strand, 17 - 1003
Target Start/End: Original strand, 36017537 - 36018529
Alignment:
| Q |
17 |
atgaataacaatattggaaatttaagcattgatgaaggtgttgaaactcctttaatgttggcactattgtcaaataatggtccttctggttgtttcttta |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36017537 |
atgaataacaatattggaaatttaagcattgatgaaggtgttgaaactcctttaatgttggcactattgtcaaataatggtccttctggttgtttcttta |
36017636 |
T |
|
| Q |
117 |
ctaagggtgaagtaatacccttttgatcattat-----------cctaatagtattcttctattctagaaatgaagtgacacccttttgatcaaaggtat |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36017637 |
ctaagggtgaagtaatacccttttgatcattatttgattattatcctaatagtgttcttctattctagaaatgaagtgacacccttttgatcaaaggtat |
36017736 |
T |
|
| Q |
206 |
atgttatgtattcaagagaatgaataataggccatattcatgttaggaaatcaagtttgaacctagcacaagaaaaataaaatggcacattgatgggaac |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36017737 |
atgttatgtattcaagagaatgaataataggccatattcatgttaggaaatcaaatttgaacctagcacaagaaaaataaagtggcacattgatgggaac |
36017836 |
T |
|
| Q |
306 |
aatccttctattgtgaattgcatgatattatgttagtgacattattgatttgatctaaacttcttannnnnnnggcgttaatcttccggtttccagggga |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| |||||||||||||||||| |
|
|
| T |
36017837 |
aatccttctattgtgaattgcatgatattatgttagtgacattattgatttgatctaaacttatt--ttttttggctttaaccttccggtttccagggga |
36017934 |
T |
|
| Q |
406 |
aagggaccaattaatctaaagttcggtcgtaataaggatagcctgacaaaaaattgttccacccaaaaatcgaactcgggttctccctaacatttcgtct |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
36017935 |
aagggaccaattaatctaaagttcggtcgtaataaggatagcctgacaaaaaattgttccacccaagaattgaactcgggttctccctaacatttcgtct |
36018034 |
T |
|
| Q |
506 |
ttggtcaaactcattaaccacttgaactcaattgcttagttaattttatctaaactttaaaagtactaaatttaatgtaaatcttatagtaaacttttca |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36018035 |
ttggtcaaactcattaaccacttgaactcaattgcttagttaattttatctaaactttaaaagtactaaatttaatgtaaatcttatagtaaacttttca |
36018134 |
T |
|
| Q |
606 |
tctaatccaaaagttactttcttccacttctagttttttgttgctgaatatatcaattccagttaaaattaagatttcaagacaaaatccattttgtcta |
705 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36018135 |
tctaatccaaaagttattttcttccacttctagttttttgttgctgaatatatcacttccagttaaaattaagatttcaagacaaaatccattttgtcta |
36018234 |
T |
|
| Q |
706 |
gctatattcaaagatatgtgatactactaaaatcaaatttcatcaagacaaatcaatttttacagtcttattatttactgtaaaatcaaacactcacaat |
805 |
Q |
| |
|
|| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36018235 |
gc----atcaaagatatgtaatactactaaaatcaaatttcatcaagacaaatcaatttttacagtcttattttttactgtaaaatcaaacactcacaat |
36018330 |
T |
|
| Q |
806 |
ctttgtttcaaacagaattgtgagaaatatg-aatgtccactattgtaagaaaagtgacaaaaaggagaggcttagtgtgaagcaaaacaatgaagtgaa |
904 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36018331 |
ctttgtttcaaacagaattgtgagaaatatgaaatgtccactattgtaagaaaagtgacagaaaggagaggcttagtgtgaagcaaaacaatgaagtgaa |
36018430 |
T |
|
| Q |
905 |
gttgctaagaagtttgctttcctacttaaagccaaaagtgcttattaagatgcaactgcttattactagcgtcatgattcatccaaacttcactttagc |
1003 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36018431 |
gttgctaagaagtttgctttcctacttaaagccaaaagtgcttattaagatgcaactgcttattactagcgtcatgattcatccaaacttcactttagc |
36018529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 272; Significance: 1e-151; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 554 - 1007
Target Start/End: Original strand, 28889835 - 28890291
Alignment:
| Q |
554 |
tctaaactttaaaagtactaaatttaatgtaaatcttatagtaaacttttcatctaatccaaaagttactttcttccacttctagttttttgttgctgaa |
653 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||| |
|
|
| T |
28889835 |
tctaaactttaaaattactaaatttaatgtaaaacttatagtaaacttttcatctaatccaaaagtcactttcttccaattagtattttttgttgctgaa |
28889934 |
T |
|
| Q |
654 |
tatatcaa--ttccagttaaaattaagatttcaagacaaaatccattttgtctagctatattcaaagatatgtgatactactaaaatcaaatttcatcaa |
751 |
Q |
| |
|
| ||||| ||| ||||||||||||||||| |||||||||||||| || |||||||||| |||||||||||| | | ||||||| |||||| |||||| |
|
|
| T |
28889935 |
tgtatcacacttctagttaaaattaagatttgaagacaaaatccatcttatctagctataatcaaagatatgtaaatcaactaaaaccaaattccatcaa |
28890034 |
T |
|
| Q |
752 |
gacaaatcaatttttacagtcttattattt--actgtaaaatcaaacactcacaatctttgtttcaaacagaattgtgagaaatatgaatgtccactatt |
849 |
Q |
| |
|
|||||||||||||| | ||||||||| ||| ||||||||||||| ||| |||||||||| ||| |||||| |||||||||||||||| ||| |||||| |
|
|
| T |
28890035 |
gacaaatcaattttaatagtcttattttttttactgtaaaatcaagcacaaacaatctttgattccaacagatttgtgagaaatatgaaagtctactatt |
28890134 |
T |
|
| Q |
850 |
gtaagaaaagtgacaaaaaggagaggcttagtgtgaagcaaaacaatgaagtgaagttgctaagaagtttgctttcctacttaaagccaaaagtgcttat |
949 |
Q |
| |
|
||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | |
|
|
| T |
28890135 |
gtaagaaaactgacaaaaaggggaggcttagtgtgaagcaagacaatgaagtgaagttgctaagaag-ctgctttcctacttaaagccaaaagtgcttgt |
28890233 |
T |
|
| Q |
950 |
taagatgcaactgcttattactagcgtcatgattcatccaaacttcactttagcctaa |
1007 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28890234 |
taagatgcaactgcttattattagcgtcatgattcatccaaacttccctttagcctaa |
28890291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 17 - 307
Target Start/End: Original strand, 28889362 - 28889655
Alignment:
| Q |
17 |
atgaataacaatattggaaatttaagcattgatgaaggtgttgaaactcctttaatgttggcactattgtcaaataatggtccttctggttgtttcttta |
116 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
28889362 |
atgaataacaatattggaaacttaagcattgatgaaggtgttgaaactcctttaatgttggcactatggtcaaataatggtccttctggttgtttcttta |
28889461 |
T |
|
| Q |
117 |
ctaagggtgaagtaatacccttttgatcatta---tcctaatagtattcttctattctagaaatgaagtgacacccttttgatcaaaggtatatgttatg |
213 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
28889462 |
ataagggtgaagtaatatccttttgatcattattatcctaatagtgttcttatattctagaaatgaagtgacacccttttgatcaaaagtttatgttatg |
28889561 |
T |
|
| Q |
214 |
tattcaagagaatgaataataggccatattcatgttaggaaatcaagtttgaacctagcacaagaaaaataaaatggcacattgatgggaacaa |
307 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
28889562 |
tatccaagagaatgaataataggccatattcatgttaggaaatcaagtttgaacctagcacaacaaaaataaaatggcacattgatgggaacaa |
28889655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 457 - 542
Target Start/End: Original strand, 9378320 - 9378405
Alignment:
| Q |
457 |
aattgttccacccaaaaatcgaactcgggttctccctaacatttcgtctttggtcaaactcattaaccacttgaactcaattgctt |
542 |
Q |
| |
|
||||||||||| || ||| |||||||| ||||||| ||| | |||| ||||| || ||||||||||||||| ||||||||||| |
|
|
| T |
9378320 |
aattgttccacacagtaatggaactcggattctcccgaacgatccgtccttggtgaagttcattaaccacttgatctcaattgctt |
9378405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 458 - 551
Target Start/End: Complemental strand, 24667096 - 24667003
Alignment:
| Q |
458 |
attgttccacccaaaaatcgaactcgggttctccctaacatttcgtctttggtcaaactcattaaccacttgaactcaattgcttagttaattt |
551 |
Q |
| |
|
|||||||||||||| ||| |||||| |||||||| |||| |||||| || || ||||||||||||||||||| | ||||| ||| |||||||| |
|
|
| T |
24667096 |
attgttccacccaagaattgaactcaggttctcctgaacaattcgtcctttgtaaaactcattaaccacttgagcccaattacttggttaattt |
24667003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 473 - 548
Target Start/End: Complemental strand, 10877170 - 10877095
Alignment:
| Q |
473 |
aatcgaactcgggttctccctaacatttcgtctttggtcaaactcattaaccacttgaactcaattgcttagttaa |
548 |
Q |
| |
|
|||||||||| ||||||||| ||| |||||| | ||| || |||||||||||||||||||||||||||| ||||| |
|
|
| T |
10877170 |
aatcgaactcaggttctcccaaacgattcgtcctcggtgaagctcattaaccacttgaactcaattgcttggttaa |
10877095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 460 - 507
Target Start/End: Complemental strand, 24532880 - 24532833
Alignment:
| Q |
460 |
tgttccacccaaaaatcgaactcgggttctccctaacatttcgtcttt |
507 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||| |||| ||||||||| |
|
|
| T |
24532880 |
tgtttcacccaagaatcgaactcgggttctcccgaacaattcgtcttt |
24532833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 457 - 539
Target Start/End: Original strand, 50414570 - 50414652
Alignment:
| Q |
457 |
aattgttccacccaaaaatcgaactcgggttctccctaacatttcgtctttggtcaaactcattaaccacttgaactcaattg |
539 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||| |||| |||||||||||| | |||||| ||||||||| |||||||| |
|
|
| T |
50414570 |
aattgttccacccaggaattgaactcgggttctcctgaacaattcgtctttggtggagctcattgaccacttgatctcaattg |
50414652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 438 - 533
Target Start/End: Complemental strand, 21629915 - 21629819
Alignment:
| Q |
438 |
taaggatagcctgacaaaaaattgttccacccaaaaatcgaactcgggttctccctaacatttcgt-ctttggtcaaactcattaaccacttgaact |
533 |
Q |
| |
|
|||| ||||| |||| ||||||||||||||| | |||| |||||||||| |||| || |||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
21629915 |
taagtatagcttgaccaaaaattgttccacctatgaatcaaactcgggttatcccgaatgtttcgtcctttggtggaactcattaaccacttgaact |
21629819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 437 - 550
Target Start/End: Complemental strand, 38021551 - 38021438
Alignment:
| Q |
437 |
ataaggatagcctgacaaaaaattgttccacccaaaaatcgaactcgggttctccctaacatttcgtctttggtcaaactcattaaccacttgaactcaa |
536 |
Q |
| |
|
||||||||||||||||||| || ||||| ||| | |||||||||| ||||||| | || || |||||| || || |||||||||| |||| ||||| |
|
|
| T |
38021551 |
ataaggatagcctgacaaacaaatgttctacctaggaatcgaactcaggttctctcaaatgatttgtctttcgtaaagttcattaaccatttgagctcaa |
38021452 |
T |
|
| Q |
537 |
ttgcttagttaatt |
550 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
38021451 |
ttgcttggttaatt |
38021438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 512 - 551
Target Start/End: Complemental strand, 26172762 - 26172723
Alignment:
| Q |
512 |
aaactcattaaccacttgaactcaattgcttagttaattt |
551 |
Q |
| |
|
||||||||||||||||||||||||||| ||| |||||||| |
|
|
| T |
26172762 |
aaactcattaaccacttgaactcaattacttggttaattt |
26172723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 445 - 504
Target Start/End: Original strand, 12023778 - 12023837
Alignment:
| Q |
445 |
agcctgacaaaaaattgttccacccaaaaatcgaactcgggttctccctaacatttcgtc |
504 |
Q |
| |
|
|||||||| || |||||||||||||| |||||||||||||| ||||| |||| |||||| |
|
|
| T |
12023778 |
agcctgaccaagaattgttccacccaggaatcgaactcgggtcctcccgaacaattcgtc |
12023837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 436 - 481
Target Start/End: Complemental strand, 14377761 - 14377716
Alignment:
| Q |
436 |
aataaggatagcctgacaaaaaattgttccacccaaaaatcgaact |
481 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||||||||| ||||| |
|
|
| T |
14377761 |
aataaggatagtctgaccaagaattgttccacccaaaaattgaact |
14377716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 457 - 546
Target Start/End: Complemental strand, 24488884 - 24488795
Alignment:
| Q |
457 |
aattgttccacccaaaaatcgaactcgggttctccctaacatttcgtctttggtcaaactcattaaccacttgaactcaattgcttagtt |
546 |
Q |
| |
|
|||||||||| ||| |||| ||||| ||||| | |||| ||| |||||||| || ||||||||||||||||||||||| ||||||| |
|
|
| T |
24488884 |
aattgttccatccataaattaaactcaggttcccatgaacaattcttctttggtgaagttcattaaccacttgaactcaatttcttagtt |
24488795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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