View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19678_low_10 (Length: 640)

Name: NF19678_low_10
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19678_low_10
NF19678_low_10
[»] chr2 (9 HSPs)
chr2 (18-620)||(41486203-41486805)
chr2 (241-558)||(41487294-41487610)
chr2 (18-207)||(41472077-41472264)
chr2 (18-155)||(41479078-41479215)
chr2 (18-168)||(40753332-40753482)
chr2 (299-439)||(40753660-40753805)
chr2 (393-443)||(41479424-41479473)
chr2 (524-581)||(40753902-40753958)
chr2 (474-532)||(40753830-40753883)
[»] chr4 (2 HSPs)
chr4 (18-207)||(16407135-16407322)
chr4 (18-88)||(52482315-52482385)


Alignment Details
Target: chr2 (Bit Score: 591; Significance: 0; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 591; E-Value: 0
Query Start/End: Original strand, 18 - 620
Target Start/End: Original strand, 41486203 - 41486805
Alignment:
Q  18 actctggaattttagggaaggaaggaaggcttccttgaaggaaggtgtttcccatttaattaagcaatggagattaaataagggaaagaaagcttattga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41486203 actctggaattttagggaaggaaggaaggcttccttgaaggaaggtgtttcccatttaattaagcaatggagattaaataagggaaagaaagcttattga 41486302  T
Q  118 ggcttcatttgggcggtaagagcttagaattagacttatatatatgcaggatacttagttgaaattctagctctaacagactttagtacattatgccaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41486303 ggcttcatttgggcggtaagagcttagaattagacttatatatatgcaggatacttagttgaaattctagctctaacagactttagtacattatgccaat 41486402  T
Q  218 ggttagtgccttgtgatacttcgtatggttgttatatatagttacttatcatgtaggagtactcttttagcagataatgtgtatgacttttgttttaaaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41486403 ggttagtgccttgtgatacttcgtatggttgttatatatagttacttatcatgtaggagtactcttttagcagataatgtgtatgacttttgtgttaaaa 41486502  T
Q  318 ctttgaaaggagttgaagttttttggaatttgttgattattgaaatttatgttgaaaattaatcacgacgagtaggtggtatcaattgtctcccttttgt 417  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41486503 ctttgaaaggagttgaagttttttggaaattgttgattattgaaatttatgttgaaaattaatcacgacgagtaggtggtatcaattgtctcccttttgt 41486602  T
Q  418 agtctggtttaaatttttgtcttgaagttaaattcattttaaatcgtacctgaacctaaaaataaagcattatatcatttccatacaataaaaaagcgtt 517  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41486603 agtctggtttaaatttttgtcttgaagttaaattcatttgaaatcgtacctgaacctaaaaataaagcattatatcatttccatacaataaaaaagcgtt 41486702  T
Q  518 atattcttgatttagtttgaactgtttttataacaattagcaatatgttgccttaaaaacaattagctggaagttttatatatttatatcttgatgctct 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41486703 atattcttgatttagtttgaactgtttttataacaattagcaatatgttgccttaaaaacaattagctggaagttttatatatttatatcttgatgctct 41486802  T
Q  618 gtg 620  Q
    |||    
T  41486803 gtg 41486805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 241 - 558
Target Start/End: Original strand, 41487294 - 41487610
Alignment:
Q  241 tatggttgttatatatagttacttatcatgtaggagtactcttttagcagataatgtgtatgacttttgttttaaaactttgaaaggagttgaagttttt 340  Q
    ||||||||||||||||  |||||||||||||||||| ||| |||||||||||||||  | ||||||  | |||||||||||| || ||||||||||||||    
T  41487294 tatggttgttatatatcattacttatcatgtaggagcacttttttagcagataatgcttgtgacttaaggtttaaaactttgtaacgagttgaagttttt 41487393  T
Q  341 tggaatttgttgattattgaaatttatgttgaaaattaatcacgacgagtaggtggtatcaattgtctcccttttgtagtctggtttaaatttttgtctt 440  Q
    | ||| |||||||||| | |||| |||||| |||| |||||  ||||||| |||||||||||| |||| ||| |||||||||||||||||||||||||||    
T  41487394 t-gaaattgttgattactaaaatatatgttaaaaagtaatcgagacgagttggtggtatcaatcgtct-cctgttgtagtctggtttaaatttttgtctt 41487491  T
Q  441 g--------aagttaaattcattttaaatcgtacctgaacctaaaaataaagcattatatcatttccatacaataaaaaagc-gttatattcttgattta 531  Q
    |        ||||||||||||||| ||||||||||||| ||||||||||||||||       |||||||||||||||||| |  ||||| |||||| |||    
T  41487492 gaaacatttaagttaaattcatttgaaatcgtacctgagcctaaaaataaagcat-------tttccatacaataaaaaaccatttatagtcttgagtta 41487584  T
Q  532 gtttgaactgtttttataacaattagc 558  Q
    |||||||||||| || |||||||||||    
T  41487585 gtttgaactgttctt-taacaattagc 41487610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 18 - 207
Target Start/End: Original strand, 41472077 - 41472264
Alignment:
Q  18 actctggaattttagggaaggaaggaaggcttccttgaaggaaggtgtttcccatttaattaagcaatggagattaaataagggaaagaaagcttattga 117  Q
    ||||||||||||||||||||||||||||||  | |||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||    
T  41472077 actctggaattttagggaaggaaggaaggccacgttgaaggagggtgtttcccatttaattaggcaatggatattaaataagggaaagaaaacttattga 41472176  T
Q  118 ggcttcatttgggcggtaagagcttagaattagacttatatatatgcaggatacttagttgaaattctagctctaacagactttagtaca 207  Q
    ||||||||||||||||||||| |||||| |||| |||||||||  ||   | | ||| || |||||||| |||||||||||||| |||||    
T  41472177 ggcttcatttgggcggtaagaacttagagttaggcttatatat--gccaaaaatttaatttaaattctaactctaacagactttggtaca 41472264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 41479078 - 41479215
Alignment:
Q  18 actctggaattttagggaaggaaggaaggcttccttgaaggaaggtgtttcccatttaattaagcaatggagattaaataagggaaagaaagcttattga 117  Q
    ||||||||||||||||||||||||||||||  | |||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||||    
T  41479078 actctggaattttagggaaggaaggaaggccacattgaaggagggtgtttcccatttaattaggcaatggaaattaaataagggaaagaaaacttattga 41479177  T
Q  118 ggcttcatttgggcggtaagagcttagaattagactta 155  Q
    ||||||||||||| |||| || | ||||||||||||||    
T  41479178 ggcttcatttgggtggtatgaacatagaattagactta 41479215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 18 - 168
Target Start/End: Original strand, 40753332 - 40753482
Alignment:
Q  18 actctggaattttagggaaggaaggaaggcttccttgaaggaaggtgtttcccatttaattaagcaatggagattaaataagggaaagaaagcttattga 117  Q
    |||||||||||||| |||||||||||||||||| |||||||| || |||||||||||| |||||  ||||| || ||| |||||||||||| ||||||||    
T  40753332 actctggaattttaaggaaggaaggaaggcttcgttgaaggagggagtttcccatttagttaagatatggaaatcaaacaagggaaagaaaacttattga 40753431  T
Q  118 ggcttcatttgggcggtaagagcttagaattagacttatatatatgcagga 168  Q
    ||||||||||||||||||||| ||| ||| |||||||||| ||||||||||    
T  40753432 ggcttcatttgggcggtaagaacttggaactagacttatacatatgcagga 40753482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 299 - 439
Target Start/End: Original strand, 40753660 - 40753805
Alignment:
Q  299 tatgacttttgttttaaaactttgaaaggagttgaagttttttggaatttgttgattattgaaatttatgttgaaaattaatcacgacgagt---aggtg 395  Q
    |||||||||||  ||||||||| ||||  ||||||||||||||| |||| |||||||| |||||  |||||  |||| |||||| |  ||||   |||||    
T  40753660 tatgacttttgggttaaaacttcgaaacaagttgaagttttttgaaatt-gttgattactgaaacatatgtcaaaaagtaatcaaggtgagtggtaggtg 40753758  T
Q  396 gta---tcaattgtctcccttttgtagtctggtttaaatttttgtct 439  Q
    |||   ||||| ||||||||||||| | |||||||||||||||||||    
T  40753759 gtactatcaatcgtctcccttttgttgcctggtttaaatttttgtct 40753805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 393 - 443
Target Start/End: Original strand, 41479424 - 41479473
Alignment:
Q  393 gtggtatcaattgtctcccttttgtagtctggtttaaatttttgtcttgaa 443  Q
    ||||||||||||||||| |||| ||||| ||||||||||||||||||||||    
T  41479424 gtggtatcaattgtctctcttt-gtagtttggtttaaatttttgtcttgaa 41479473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 524 - 581
Target Start/End: Original strand, 40753902 - 40753958
Alignment:
Q  524 ttgatttagtttgaactgtttttataacaattagcaatatgttgccttaaaaacaatt 581  Q
    |||||||||||||||||||||||| |||||| ||| | ||||||||||||||| ||||    
T  40753902 ttgatttagtttgaactgttttta-aacaatcagctagatgttgccttaaaaaaaatt 40753958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 474 - 532
Target Start/End: Original strand, 40753830 - 40753883
Alignment:
Q  474 taaaaataaagcattatatcatttccatacaataaaaaagcgttatattcttgatttag 532  Q
    |||| |||||||||||||||||||||||||     |||||| |||||||||||||||||    
T  40753830 taaagataaagcattatatcatttccatac-----aaaagcattatattcttgatttag 40753883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 5e-39; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 18 - 207
Target Start/End: Complemental strand, 16407322 - 16407135
Alignment:
Q  18 actctggaattttagggaaggaaggaaggcttccttgaaggaaggtgtttcccatttaattaagcaatggagattaaataagggaaagaaagcttattga 117  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||||  |||||| |  || ||| ||||||||| ||||||||    
T  16407322 actctggaattttaaggaaggaaggaaggcttcgttgaaggaaggtgtttcgcatttaattaataaatggaaagcaagtaaaggaaagaaaacttattga 16407223  T
Q  118 ggcttcatttgggcggtaagagcttagaattagacttatatatatgcaggatacttagttgaaattctagctctaacagactttagtaca 207  Q
    ||| ||||||||||||||| | |||||| |||  ||  ||||||||| ||| | ||| || |||||| |||||||||||||||| |||||    
T  16407222 ggcatcatttgggcggtaataacttagagttacgct--tatatatgccggaaatttaatttaaattcgagctctaacagacttttgtaca 16407135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 52482315 - 52482385
Alignment:
Q  18 actctggaattttagggaaggaaggaaggcttccttgaaggaaggtgtttcccatttaattaagcaatgga 88  Q
    |||||||||||||| |||||||||||||||| |  ||||||| |||||||| |||||||||| ||||||||    
T  52482315 actctggaattttaaggaaggaaggaaggctacggtgaaggagggtgtttcacatttaattaggcaatgga 52482385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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