View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19678_low_11 (Length: 615)
Name: NF19678_low_11
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19678_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 485; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 485; E-Value: 0
Query Start/End: Original strand, 14 - 601
Target Start/End: Complemental strand, 31784761 - 31784173
Alignment:
| Q |
14 |
aaatagggatcatgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattaggaatgacatttattgaattgttagctacaccagtgc |
113 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| |
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| T |
31784761 |
aaatggggatcgtgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattaggaatgatgtttattgaattgttaggtacaccgatgc |
31784662 |
T |
|
| Q |
114 |
ttttgtttctgatgtctctaaccatatgttcaacttttatcttgatacctccgccccttacactcattattctttcctcataatagttggaaggttccct |
213 |
Q |
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||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |
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| T |
31784661 |
tttggtttctgatgtctctaaccatatgttcaactttgatcttgatacctccgccccgtacactcagcattctttcctcagaatagttggaaggttccct |
31784562 |
T |
|
| Q |
214 |
tgtttgcatcaaactattttggcaacctgagaaagaaaaaacaaatattgcattgtttacactaacttctcgtccatgcgagtctgtgatttttcctgtc |
313 |
Q |
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| T |
31784561 |
tgtttgcatcaaactattttggtaacctgagaaagaaaaaacaaatattgcattgtttgcactaacttctcgtccatgcgagtctgtgatttttcctgtc |
31784462 |
T |
|
| Q |
314 |
ttgatggcttgagacagactgctttgagctactatatctgctttatcaacattttcaatg-aaaccacagacaatggtttcttgtagcacttatctacga |
412 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||| |||||||| |
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| T |
31784461 |
ttgatggcttgagacaaactgctttgagctactatatccgctttatcaacattttcaatgaaaaccacagacaatggtttcttgcagcactcatctacga |
31784362 |
T |
|
| Q |
413 |
gaaaatcaaggtgagacttccctctgaatttcacattgcatccattcatttctttggaactcagatccacaaaagtaaagttttcccggcttctatacag |
512 |
Q |
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| T |
31784361 |
gaaaatcaaggtgagacttccctctgaatttcacattacatccattcatttctttggaactcagatccacaaaagtaaagttttcccggcttccatacag |
31784262 |
T |
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| Q |
513 |
taattcagcaagagaaacagcaattttctttttaccatgcctatcgggtccaacaaaattcacccacttgtccccacgctgatttaacc |
601 |
Q |
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| T |
31784261 |
taattcagctagagaaacagcaattttctttttaccatgcctatcgggtccaacaaaattcatccacttgtccccacgttgatttaacc |
31784173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 289 - 601
Target Start/End: Original strand, 19633725 - 19634038
Alignment:
| Q |
289 |
atgcgagtctgtgatttttcctgtcttgatggcttgagacagactgctttgagctactatatctgctttatcaacattttcaatgaaa-ccacagacaat |
387 |
Q |
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| T |
19633725 |
atgcgagtctgtgatttttcctgtcttgatggcttgagacaaactgctttgagctactatatcagctttatcaacattttcaatgaaaaccacagacaat |
19633824 |
T |
|
| Q |
388 |
ggtttcttgtagcacttatctacgagaaaatcaaggtgagacttccctctgaatttcacattgcatccattcatttctttggaactcagatccacaaaag |
487 |
Q |
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| T |
19633825 |
ggtttcttgcagcactcatctacgagaaaatcaaggtgagacttccctctgaatttcacattgcatccattcatttctttggaactcagatccacaaaag |
19633924 |
T |
|
| Q |
488 |
taaagttttcccggcttctatacagtaattcagcaagagaaacagcaattttctttttaccatgcctatcgggtccaacaaaattcacccacttgtcccc |
587 |
Q |
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| T |
19633925 |
taaagttttcccggcttccatacagtaattcagcaagagaaacaacaattttctttttaccatgcctatcgggtccaacaaaattcatccacttgtcccc |
19634024 |
T |
|
| Q |
588 |
acgctgatttaacc |
601 |
Q |
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|||||||||||||| |
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| T |
19634025 |
acgctgatttaacc |
19634038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 19631618 - 19631893
Alignment:
| Q |
20 |
ggatcatgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattaggaatgacatttattgaattgttagctacaccagtgcttttgt |
119 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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| T |
19631618 |
ggatcgtgaagttcattgtcaccaatcaattttcgtttgtttatgaaatttagattaggaatgacatttattgaattgttagctacaccgatgctttggt |
19631717 |
T |
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| Q |
120 |
ttctgatgtctctaaccatatgttcaacttttatcttgatacctccgccccttacactcattattc--tttcctcataatagttggaaggttcccttgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
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| T |
19631718 |
ttctgatgtctctaaccatatgttcaacttttatcttgatacctccgccccttacacttattattctttttcctcataatagttggaaggttcccttgtt |
19631817 |
T |
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| Q |
218 |
tgcatcaaactattttggcaacctgagaaagaaaaaacaaatattgcattgtttacactaacttctcgtccatgcg |
293 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
19631818 |
tgcatcaaactattttggcaacctgagaaagaaaaaacaaatagtacattgtttacactaacttctcgtccatgcg |
19631893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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