View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19678_low_12 (Length: 558)
Name: NF19678_low_12
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19678_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 10 - 543
Target Start/End: Complemental strand, 40595575 - 40595029
Alignment:
| Q |
10 |
gccaaatgcctttatgctgttgtgtgcactgcaaaaagtagcaagttttaatttctgacaaggttaagttgcaaagataaataaattggttatgtatcac |
109 |
Q |
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| T |
40595575 |
gccaaatgcctttatgctgttgtgtgcactgcaaaaagtagcaagttttaatttctgacaaggttaagttgcaaagataaataaattggttatgtatcac |
40595476 |
T |
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| Q |
110 |
tctctagagagcatgaggaaacaaattatatctttgcatattgttgagacaattgtataaaaatctatcctgagttgagacgtttgtgtaaacatctatc |
209 |
Q |
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| T |
40595475 |
tctctagagagcatgaggaaacaaattatatctttgcatattgttgagacaattgtataaaaatctatcttgagttgagacatttgtgtaaacatctatc |
40595376 |
T |
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| Q |
210 |
ttgaaatgcgtacaactctctcttgatgtatctaga-------------gcccgaaatggtctaacagattcataagaatatatcatgttatcagcatca |
296 |
Q |
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| T |
40595375 |
ttgaaatgcgtacaactctctcttgatgtatctagaacttccccgtagagcccgaaatggtctaacagattcataagaatatatcatgttatcagcatca |
40595276 |
T |
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| Q |
297 |
ctttaataggcatgctactactcttatttgttttgaaactaggtgtgatgaattggtcatgttaagtcaaagtaattttattggtttgaacctaatttta |
396 |
Q |
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| T |
40595275 |
ctttaataggcatgctactactcttatttgttttgaaactaggtgtgatgaattggtcatgttaagtcaaagtaattttattggtttgaacctaatttta |
40595176 |
T |
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| Q |
397 |
tttgattcttgtgattatgctaatgatagttatcannnnnnncgttaattgtcttcaaagattggttttgacactgttttgccgggatatgtgtaatagg |
496 |
Q |
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| T |
40595175 |
tttgattcttgtgattatgctaatgatagttatcatttttttcgttaattgtcttcaaagattggttttgacactgttttgccgggatatgtgtaatagg |
40595076 |
T |
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| Q |
497 |
ttaacaagcgatacaagcagtaccatcaacaaatgcaaatggttttt |
543 |
Q |
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| T |
40595075 |
ttaacaagcgatacaagcagtaccatcaacaaatgcaaatggttttt |
40595029 |
T |
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