View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19678_low_14 (Length: 543)
Name: NF19678_low_14
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19678_low_14 |
 | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 34)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 17 - 421
Target Start/End: Original strand, 4572370 - 4572792
Alignment:
| Q |
17 |
catttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaa |
116 |
Q |
| |
|
||||| |||||||||| |||||||| ||||| ||||||||||||||||| || ||||||||| ||| |||||||||||||||| ||||||||||| ||| |
|
|
| T |
4572370 |
cattttgacctcttgacttgagcaaccgtttgtgattgtattcagtgtttacataggttatgtgaaaacctctaaggtgaagaaattttgctagttgcaa |
4572469 |
T |
|
| Q |
117 |
caatggatttatgtggccttgatatggagatggaatcaacacagcatgtggttttttatcactcatttttgagtttttgtgtttgaatgatgagctaaga |
216 |
Q |
| |
|
||||||||| || ||||||||| |||| |||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
4572470 |
caatggattgatatggccttgaactggatatgggattaacacagcatgtggttttttatcactcattattgagtttttgtgtttgaatgttgagctaag- |
4572568 |
T |
|
| Q |
217 |
gaagccaatggtttaatagagataaagccaatgtttctttgatttgtagaaaagaagatagagacaaaagacta-------aaaat-----------tgt |
298 |
Q |
| |
|
||| |||||| ||||||| ||||||| |||||||||||| ||||||| |||||||||||||||||||||||| | ||||| || |
|
|
| T |
4572569 |
gaaaccaatgttttaataaagataaatccaatgtttcttggatttgtggaaaagaagatagagacaaaagacaaggaaagcaaaatcaaatttaaagggt |
4572668 |
T |
|
| Q |
299 |
gagatcttattcttataatatgaaataattctaagtgacacaataattgatgcatactagtcaagtcaccac-atttgccacgtgagagaaggaaaacaa |
397 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
|
|
| T |
4572669 |
gagatctttttcttataatatgaaataattctaagtgacacaataattgatgcatactagtcaagtcaccactttttgttacgtgagagaaggaaaacaa |
4572768 |
T |
|
| Q |
398 |
tttttcattaaaaagtttatagca |
421 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4572769 |
tttttcattaaaaagtttatagca |
4572792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 17 - 286
Target Start/End: Original strand, 4558529 - 4558799
Alignment:
| Q |
17 |
catttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaa |
116 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| || |||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4558529 |
catttggacctcttgacttgagcaaccgtttgtggttgtattcagtgtttacataggttatgtgaaatcctctaaggtgaagaagttttgctagtttcaa |
4558628 |
T |
|
| Q |
117 |
caatggatttatgtggccttgatatggagatggaatcaacacagcatgtggttttttatcactcatttttgagtttttgtgtttgaatgatgagctaaga |
216 |
Q |
| |
|
||||||||| || ||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4558629 |
caatggattgatatggccttgaactggatatggaattaacacagcatgtggttttttatcactcatttttgagtttttgtgtttgaatgttgagctaagg |
4558728 |
T |
|
| Q |
217 |
gaagccaatggtttaatagagataaagccaatgtttctttgatttgtagaaaagaagat-agagacaaaag |
286 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||| ||||||||||| |
|
|
| T |
4558729 |
gaagccaatggtttaataaagataaagccaatgtttcttggatttgtgtaaaagaagataagagacaaaag |
4558799 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 17 - 243
Target Start/End: Original strand, 4587036 - 4587260
Alignment:
| Q |
17 |
catttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaa |
116 |
Q |
| |
|
|||||||| ||||||| || ||||| ||||| ||||||||||||||||| || |||||||||| |||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
4587036 |
catttggagctcttgacttaagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaatcctcgaaggtgaagaagtttagctagtttcaa |
4587135 |
T |
|
| Q |
117 |
caatggatttatgtggccttgatatggagatggaatcaacacagcatgtggttttttatcactcatttttgagtttttgtgtttgaatgatgagctaaga |
216 |
Q |
| |
|
||||||||| || ||||||||| ||||||||| || ||||||||||| |||||| ||||||||||| |||| ||||||||||||| ||||| ||| |
|
|
| T |
4587136 |
caatggattgatatggccttgaactggagatgggattaacacagcatgaggttttgaatcactcatttctgag--tttgtgtttgaattttgagcaaagg |
4587233 |
T |
|
| Q |
217 |
gaagccaatggtttaatagagataaag |
243 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
4587234 |
gaagccaatggtttaatagagataaag |
4587260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 4594414 - 4594568
Alignment:
| Q |
17 |
catttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaa |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||| ||||| || |
|
|
| T |
4594414 |
catttggacctcttgatttgagcaaacgtttatgattgtattcagtgttgacaaaggttatgtgaaatcctctaaggtgaagaagttttgcaagtttgaa |
4594513 |
T |
|
| Q |
117 |
caatggatttatgtggccttgatatggagatggaatcaacacagcatgtggtttt |
171 |
Q |
| |
|
|||||||||||| || |||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
4594514 |
caatggatttatatgtccttgaagtggagctggaatcaacacagcatgtggtttt |
4594568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 4565433 - 4565587
Alignment:
| Q |
17 |
catttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaa |
116 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||| || |||||||| | ||||||||||||||||||||||||||| ||||| || |
|
|
| T |
4565433 |
catttggacctcttgattttagcaatcgtttatgattgtattcagtgttgacaaaggttatatgaaatcctctaaggtgaagaagttttgcaagtttgaa |
4565532 |
T |
|
| Q |
117 |
caatggatttatgtggccttgatatggagatggaatcaacacagcatgtggtttt |
171 |
Q |
| |
|
|||||||||||| || |||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
4565533 |
caatggatttatatgtccttgaaatggagctggaatcaacacagcatgtggtttt |
4565587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 4612442 - 4612256
Alignment:
| Q |
17 |
catttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaa |
116 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||| ||||||| ||| ||||||||||||||||||||||||||||| | |
|
|
| T |
4612442 |
catttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttgacgaatgttatgtgaaagcctctaaggtgaagaagttttgctagtttgat |
4612343 |
T |
|
| Q |
117 |
caatggatttatgtggccttgatatggagatggaatcaacacagcatgtggttttttatcactcatttttgagtttttgtgtttgaatg |
205 |
Q |
| |
|
|||||||| || ||||||||| |||| ||||||| ||||| |||||||||||| ||||||||||| |||| |||||||||||||| |
|
|
| T |
4612342 |
taatggattgatatggccttgaactggatatggaattaacactgcatgtggttttgaatcactcatttctgag--tttgtgtttgaatg |
4612256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 4603514 - 4603668
Alignment:
| Q |
17 |
catttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaa |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4603514 |
cattaggacctcttgatttgagcaaacgtttgtgattgtattcggtgttgacaaaggttatgtgaaatcctctaaggtgaaatagttttgctagtttcaa |
4603613 |
T |
|
| Q |
117 |
caatggatttatgtggccttgatatggagatggaatcaacacagcatgtggtttt |
171 |
Q |
| |
|
|| |||||| || ||||||||| |||| |||||||||||||||||||| ||||| |
|
|
| T |
4603614 |
cattggattgatatggccttgaagtggatatggaatcaacacagcatgttgtttt |
4603668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 4618707 - 4618859
Alignment:
| Q |
19 |
tttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaaca |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||| ||| ||||||||||||||||| ||||||||||| |||| |
|
|
| T |
4618707 |
tttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaaca |
4618806 |
T |
|
| Q |
119 |
atggatttatgtggccttgatatggagatggaatcaacacagcatgtggtttt |
171 |
Q |
| |
|
||||||| || ||||||||| |||| ||||||||| |||| ||||||||||| |
|
|
| T |
4618807 |
atggattgatatggccttgaactggatatggaatcatcacaacatgtggtttt |
4618859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 24 - 167
Target Start/End: Original strand, 4627561 - 4627704
Alignment:
| Q |
24 |
acctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaacaatgga |
123 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| || |||||||||| ||| |||||||||||||| | |||||||||| ||||||||||| |
|
|
| T |
4627561 |
acctcttgatttgagcaaacgtttgtgattgtattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagtaattttgctagtatcaacaatgga |
4627660 |
T |
|
| Q |
124 |
tttatgtggccttgatatggagatggaatcaacacagcatgtgg |
167 |
Q |
| |
|
|| || ||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
4627661 |
ttgatatggccttgaagtggaaatggaatcaacacagcatgtgg |
4627704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 4513703 - 4513549
Alignment:
| Q |
17 |
catttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaa |
116 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| ||| |||||||||||||| |||||||||| | | || |
|
|
| T |
4513703 |
cattaggacctcttgatttgagcaaacgtttgtgattgtattcggtgttaacaaaggttatgtgaaagcctctaaggtgaagtagttttgctaatctgaa |
4513604 |
T |
|
| Q |
117 |
caatggatttatgtggccttgatatggagatggaatcaacacagcatgtggtttt |
171 |
Q |
| |
|
|| |||||| || ||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
4513603 |
cattggattgatatggccttgaagtggatatggaatcaacacagcatgtggtttt |
4513549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 4265780 - 4265631
Alignment:
| Q |
18 |
atttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaac |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||| ||| ||||||||||||||||| ||| |||| || ||| |
|
|
| T |
4265780 |
atttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagaagctttcctagattgaac |
4265681 |
T |
|
| Q |
118 |
aatggatttatgtggccttgatatggagatggaatcaacacagcatgtgg |
167 |
Q |
| |
|
|||| ||| || ||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
4265680 |
aatgcattgatatggccttgaaatggagctggaatcaacacagcatgtgg |
4265631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 24 - 171
Target Start/End: Original strand, 4507322 - 4507469
Alignment:
| Q |
24 |
acctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaacaatgga |
123 |
Q |
| |
|
|||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||| ||| |||| |||||||||||| || |||||||| ||||||||| |
|
|
| T |
4507322 |
acctcttgatttgagcaagcgtttgtgattgtattcggtgttaacaaaggttatgtgaaagcctcgaaggtgaagaagcttagctagtttgaacaatgga |
4507421 |
T |
|
| Q |
124 |
tttatgtggccttgatatggagatggaatcaacacagcatgtggtttt |
171 |
Q |
| |
|
|| || ||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
4507422 |
ttgatatggccttgagttggatatggaatcaacacagcatgtggtttt |
4507469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 24 - 173
Target Start/End: Original strand, 4575866 - 4576015
Alignment:
| Q |
24 |
acctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaacaatgga |
123 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||| |||||||||||||| |||||||||| ||||||||||| | |
|
|
| T |
4575866 |
acctcttgatttgagcaaacgtttgtgattgtattcagtgttaacaaaggttatgtgaaagcctctaaggtgaagcagttttgctattttcaacaatgca |
4575965 |
T |
|
| Q |
124 |
tttatgtggccttgatatggagatggaatcaacacagcatgtggtttttt |
173 |
Q |
| |
|
|| || ||||||||| |||| ||||| | ||||| |||||||| ||||| |
|
|
| T |
4575966 |
ttgatatggccttgaactggaaatggagttaacactgcatgtggcttttt |
4576015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 24 - 175
Target Start/End: Complemental strand, 4258893 - 4258742
Alignment:
| Q |
24 |
acctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaacaatgga |
123 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||| || |||||||||| ||| ||| ||| ||||||||| || |||||||| ||||||||| |
|
|
| T |
4258893 |
acctcttgatttgagcaaacgtttgtgattatattcagtgttgacaaaggttatgtgaaaacctttaaagtgaagaagcttagctagtttgaacaatgga |
4258794 |
T |
|
| Q |
124 |
tttatgtggccttgatatggagatggaatcaacacagcatgtggttttttat |
175 |
Q |
| |
|
|| || ||||||||| |||| |||||||||||||||||||||| ||||||| |
|
|
| T |
4258793 |
ttgatatggccttgagctggatatggaatcaacacagcatgtggctttttat |
4258742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 17 - 167
Target Start/End: Complemental strand, 4488921 - 4488771
Alignment:
| Q |
17 |
catttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaa |
116 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||||| |||||||||||||||||| |||||| |||||||||| |
|
|
| T |
4488921 |
catttggacctcttgatttgagcaagcgtttgtgattgtattcagtgttgacaaaggttatgtgaaatcctctaaggtgaagtagttttcctagtttcaa |
4488822 |
T |
|
| Q |
117 |
caatggatttatgtggccttgatatggagatggaatcaacacagcatgtgg |
167 |
Q |
| |
|
||||| ||| || ||||||||| |||| |||| | ||||| |||||||| |
|
|
| T |
4488821 |
caatgcattgatatggccttgaactggaaatggtgttaacactgcatgtgg |
4488771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 3173407 - 3173561
Alignment:
| Q |
17 |
catttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaa |
116 |
Q |
| |
|
|||||||||| ||||||||||||| ||||| ||||||||||||||||| || |||||||||| ||| ||||||| |||||| ||||||||||||||||| |
|
|
| T |
3173407 |
catttggaccctttgatttgagcaaccgtttgtgattgtattcagtgtttacaaaggttatgtgaaagcctctaaagtgaagtagttttgctagtttcaa |
3173506 |
T |
|
| Q |
117 |
caatggatttatgtggccttgatatggagatggaatcaacacagcatgtggtttt |
171 |
Q |
| |
|
||||| ||| || ||||||||| |||| ||||| | ||||| |||||||||||| |
|
|
| T |
3173507 |
caatgcattgatatggccttgaactggatatggagttaacactgcatgtggtttt |
3173561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 19 - 173
Target Start/End: Original strand, 4482271 - 4482425
Alignment:
| Q |
19 |
tttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaaca |
118 |
Q |
| |
|
|||||||| |||||||| ||||||||||| ||||||||||| ||||| || |||||||||| ||| |||||||||||||| |||||| ||| |||||||| |
|
|
| T |
4482271 |
tttggaccccttgattttagcaaacgtttgtgattgtattcggtgttgacaaaggttatgtgaaagcctctaaggtgaagtagttttcctattttcaaca |
4482370 |
T |
|
| Q |
119 |
atggatttatgtggccttgatatggagatggaatcaacacagcatgtggtttttt |
173 |
Q |
| |
|
||| ||| || ||||||||| |||| ||||| ||||||| |||||||||||||| |
|
|
| T |
4482371 |
atgcattgatatggccttgagctggaaatggagtcaacactgcatgtggtttttt |
4482425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 4462616 - 4462761
Alignment:
| Q |
22 |
ggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaacaatg |
121 |
Q |
| |
|
||||||||||| |||||||| | || ||||||||||||||||| || |||||||||| ||| |||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
4462616 |
ggacctcttgaattgagcaagcaattgtgattgtattcagtgttgacaaaggttatgtgaaaacctctaaggtgaagtagttttcctagtttcaacaatg |
4462715 |
T |
|
| Q |
122 |
gatttatgtggccttgatatggagatggaatcaacacagcatgtgg |
167 |
Q |
| |
|
||| || |||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
4462716 |
cattgatatggccttgggatggacatggaatcaacacagcatgtgg |
4462761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 22 - 210
Target Start/End: Original strand, 4599572 - 4599758
Alignment:
| Q |
22 |
ggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaacaatg |
121 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||| || ||||| |||||||||||||||||||||||||||||||||| ||||||||||| | ||| |
|
|
| T |
4599572 |
ggacctcttgatttgagcaagcgtttgtgattgtactcggtgttcacgaaggttatgtaaaatcctctaaggtgaagaatctttgctagtttgattaata |
4599671 |
T |
|
| Q |
122 |
gatttatgtggccttgatatggagatggaatcaacacagcatgtggttttttatcactcatttttgagtttttgtgtttgaatgatgag |
210 |
Q |
| |
|
|||| || | |||||| ||| |||||||||| || |||||| |||||||| ||||||||| |||| |||||||||||||| |||| |
|
|
| T |
4599672 |
gattgatatttccttgaattggtaatggaatcaatactgcatgtagttttttaccactcatttgtgag--tttgtgtttgaatgttgag |
4599758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 19 - 167
Target Start/End: Original strand, 4517746 - 4517894
Alignment:
| Q |
19 |
tttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaaca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||||||| ||| |||||||| |||||||||||||||||||| |||| |
|
|
| T |
4517746 |
tttggacctcttgatttgagcaaacgtttgtgattgtattcggtgttgacaaaggttatgtgaaagcctctaagatgaagaagttttgctagttttaaca |
4517845 |
T |
|
| Q |
119 |
atggatttatgtggccttgatatggagatggaatcaacacagcatgtgg |
167 |
Q |
| |
|
| ||||| || ||||||||| |||| ||||| | | ||| |||||||| |
|
|
| T |
4517846 |
acggattgatatggccttgaagtggatatggagttatcactgcatgtgg |
4517894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 4623713 - 4623869
Alignment:
| Q |
19 |
tttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaaca |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| |||| | | |||||||||| ||| ||| |||||| |||||| ||||||||||| |||| |
|
|
| T |
4623713 |
tttggacctcttgatttgagcaagcgtttgtgattgtattcggtgtgaccaaaggttatgtgaaagcctttaaggtaaagaagctttgctagtttgaaca |
4623812 |
T |
|
| Q |
119 |
atggatttatgtggccttgatatggagatggaatcaacacagcatgtggttttttat |
175 |
Q |
| |
|
||||||| || || |||||| |||| ||| |||||||||||||||||| ||||||| |
|
|
| T |
4623813 |
atggattgatatgaccttgaactggatatgcaatcaacacagcatgtggctttttat |
4623869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 4581420 - 4581578
Alignment:
| Q |
19 |
tttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaaca |
118 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||| ||||| || |||||||||| ||| ||||||||||||||||| ||||||||| | | | |
|
|
| T |
4581420 |
tttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttgacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtgttatta |
4581519 |
T |
|
| Q |
119 |
atggatttatgtggccttgatatggagatggaatcaacacagcatgtggttttttatca |
177 |
Q |
| |
|
||||| | || || |||||| |||| ||||||||||||| |||||||| ||||||||| |
|
|
| T |
4581520 |
atggagtgatatgtccttgaagtggatatggaatcaacactgcatgtggctttttatca |
4581578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 22 - 167
Target Start/End: Original strand, 4471323 - 4471468
Alignment:
| Q |
22 |
ggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaacaatg |
121 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||||||||||||| || || ||||||| ||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4471323 |
ggacctcttgaattgagcaaggctttgtgattgtattcagtgttgacaaacgttatgtgaaagcctctaaggtgaagaagctttgctagtttcaacaatg |
4471422 |
T |
|
| Q |
122 |
gatttatgtggccttgatatggagatggaatcaacacagcatgtgg |
167 |
Q |
| |
|
||| || ||||||||| |||| |||||||||| ||||||||||| |
|
|
| T |
4471423 |
cattgatatggccttgagctggacatggaatcaatacagcatgtgg |
4471468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 433 - 525
Target Start/End: Original strand, 4558997 - 4559089
Alignment:
| Q |
433 |
aaaagtgcgttgaatataaaattatttgtttttatatacatttacgtataattgagttgaacaataaattgaagactaaaaatcaattataaa |
525 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||| ||||||||| |||||| |||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
4558997 |
aaaagtgcgttgaatataaaataatttgtgtttatataaatttacgtaaaattgatttgaactataaattgaagactaaaaatcgattataaa |
4559089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 4569480 - 4569595
Alignment:
| Q |
19 |
tttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaaca |
118 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||| || ||||| || |||||||||| ||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
4569480 |
tttggacctcttgatttgagcaaatgtttgtgatt----tcggtgttgacaaaggttatgtgaaagcctctaaggtgaagaagttttgctagtttcaata |
4569575 |
T |
|
| Q |
119 |
atggatttatgtggccttga |
138 |
Q |
| |
|
||||||| || ||||||||| |
|
|
| T |
4569576 |
atggattgatatggccttga |
4569595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 24 - 138
Target Start/End: Original strand, 4562073 - 4562187
Alignment:
| Q |
24 |
acctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaagg-ttatgtaaaatcctctaaggtgaagaagttttgctagtttcaacaatgg |
122 |
Q |
| |
|
|||||||||||| ||||||||||| |||||||||||||||||||| |||| |||||| ||| ||||| |||||||| |||||||||| ||||||||||| |
|
|
| T |
4562073 |
acctcttgattt-agcaaacgtttgtgattgtattcagtgttaacaaaggtttatgtgaaagcctcttaggtgaagcagttttgctattttcaacaatgc |
4562171 |
T |
|
| Q |
123 |
atttatgtggccttga |
138 |
Q |
| |
|
||| || || |||||| |
|
|
| T |
4562172 |
attgatatgaccttga |
4562187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 4503017 - 4502943
Alignment:
| Q |
17 |
catttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaa |
91 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||||||||| ||||| || |||||||||| ||||||||||| |
|
|
| T |
4503017 |
catttggacctcttgatttgagcaagcgtttgtgattgtattcggtgttgacaaaggttatgtgaaatcctctaa |
4502943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 426 - 518
Target Start/End: Original strand, 4572864 - 4572956
Alignment:
| Q |
426 |
tttggtaaaaagtgcgttgaatataaaattatttgtttttatatacatttacgtataattgagttgaacaataaattgaagactaaaaatcaa |
518 |
Q |
| |
|
|||| ||||||| |||||| |||||||||||||| | ||||||| ||||||||| | ||||||||| ||| ||||| |||||| |||||||| |
|
|
| T |
4572864 |
tttgttaaaaagggcgttggatataaaattatttatacttatatatatttacgtaaatttgagttgagcaaaaaattaaagacttaaaatcaa |
4572956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 417
Target Start/End: Original strand, 4558836 - 4558913
Alignment:
| Q |
336 |
acacaataattgatgcatactagtcaagtcaccacatttgccacgtgagagaaggaaaacaatttttcattaaaaagtttat |
417 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||| ||| || | ||||||||||||||||||||||||||||||||| |
|
|
| T |
4558836 |
acacaataattgatacatacttatcaagtcaccacttttt----gttatagaaggaaaacaatttttcattaaaaagtttat |
4558913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 167
Target Start/End: Complemental strand, 4255531 - 4255395
Alignment:
| Q |
19 |
tttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaaca |
118 |
Q |
| |
|
|||||||||||||||| |||||| ||||| ||||||||||| ||||| || ||| ||| |||| ||||| | |||||||||||| || | |
|
|
| T |
4255531 |
tttggacctcttgattcgagcaagcgtttgtgattgtattcggtgttgacaaag------------cctttaagatgaagtaattttgctagtttgaata |
4255444 |
T |
|
| Q |
119 |
atggatttatgtggccttgatatggagatggaatcaacacagcatgtgg |
167 |
Q |
| |
|
|| |||| || ||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
4255443 |
atagattgatatggccttgaactggatatggaatcaacacagcatgtgg |
4255395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 173
Target Start/End: Complemental strand, 4497899 - 4497813
Alignment:
| Q |
87 |
tctaaggtgaagaagttttgctagtttcaacaatggatttatgtggccttgatatggagatggaatcaacacagcatgtggtttttt |
173 |
Q |
| |
|
|||||||||||| | |||| ||||||||||||||||||| || ||||||| | |||| ||||| | ||||| |||||||| ||||| |
|
|
| T |
4497899 |
tctaaggtgaagtaattttcctagtttcaacaatggattgatatggccttaaattggaaatggagttaacactgcatgtggcttttt |
4497813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 463 - 525
Target Start/End: Original strand, 4587416 - 4587478
Alignment:
| Q |
463 |
tttatatacatttacgtataattgagttgaacaataaattgaagactaaaaatcaattataaa |
525 |
Q |
| |
|
|||||||| ||||||||| |||||| ||||| ||||||||||||||| ||| || |||||||| |
|
|
| T |
4587416 |
tttatataaatttacgtaaaattgatttgaaaaataaattgaagacttaaattcgattataaa |
4587478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #33
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 58
Target Start/End: Complemental strand, 4483569 - 4483534
Alignment:
| Q |
23 |
gacctcttgatttgagcaaacgtttatgattgtatt |
58 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4483569 |
gacctcttgatttgagcaaacgtttgtgattgtatt |
4483534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 387 - 421
Target Start/End: Original strand, 4587280 - 4587314
Alignment:
| Q |
387 |
aaggaaaacaatttttcattaaaaagtttatagca |
421 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4587280 |
aaggaaatcaatttttcattaaaaagtttatagca |
4587314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 1282837 - 1282991
Alignment:
| Q |
17 |
catttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaa |
116 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||| ||||| |||||||||||||| |||||||||||||| |||||||||||||| || |
|
|
| T |
1282837 |
catttggacctcttgatttgagcaagcgtttgtgattgtattcagtattaacaaaggttatgtaaaagcctctaaggtgaagtagttttgctagtttgaa |
1282936 |
T |
|
| Q |
117 |
caatggatttatgtggccttgatatggagatggaatcaacacagcatgtggtttt |
171 |
Q |
| |
|
||||||||| || ||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
1282937 |
caatggattgatatggccttgagctggatatggaatcaacacagcatgtggtttt |
1282991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 17 - 173
Target Start/End: Original strand, 2228 - 2384
Alignment:
| Q |
17 |
catttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaa |
116 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||| || |||||||||| ||| ||||||||||||||||| ||||||||||| || |
|
|
| T |
2228 |
cattaggacctcttgatttgagcaagcgtttatgattgtattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaa |
2327 |
T |
|
| Q |
117 |
caatggatttatgtggccttgatatggagatggaatcaacacagcatgtggtttttt |
173 |
Q |
| |
|
|||||||| || ||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
2328 |
taatggattgatatggccttgaactggatatggaatcaacacagcatgtggtttttt |
2384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 17 - 171
Target Start/End: Complemental strand, 2175 - 2021
Alignment:
| Q |
17 |
catttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaa |
116 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||| || |||||||||| ||| ||||||||||||||||| ||||||||||| || |
|
|
| T |
2175 |
cattaggacctcttgatttgagcaagcgtttatgattgtattcagtgttgacaaaggttatgtgaaagcctctaaggtgaagaagctttgctagtttgaa |
2076 |
T |
|
| Q |
117 |
caatggatttatgtggccttgatatggagatggaatcaacacagcatgtggtttt |
171 |
Q |
| |
|
||||||||| || ||||||||| |||| ||||||||| |||| ||||||||||| |
|
|
| T |
2075 |
caatggattgatatggccttgaactggatatggaatcatcacaacatgtggtttt |
2021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 24 - 177
Target Start/End: Original strand, 3088156 - 3088309
Alignment:
| Q |
24 |
acctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaacaatgga |
123 |
Q |
| |
|
|||||||||||| |||||||| || ||||||||||| || || || |||||||||| ||| ||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
3088156 |
acctcttgatttaagcaaacggttgtgattgtattcggtattgacaaaggttatgtgaaagcctttaaggtgaagaagttttgctagttttaacaatgga |
3088255 |
T |
|
| Q |
124 |
tttatgtggccttgatatggagatggaatcaacacagcatgtggttttttatca |
177 |
Q |
| |
|
||||| || |||||| |||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
3088256 |
tttatatgaccttgaagtggatatggaatcaacacagcatgtggctttttatca |
3088309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 1165 - 1316
Alignment:
| Q |
20 |
ttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaacaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| || |||||| | | | ||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
1165 |
ttggacctcttgatttgagcaaacgtttgtgattgtattcagtgttgacataggttacatgagagcctctaaggtgaataagttttgctagtttgaacaa |
1264 |
T |
|
| Q |
120 |
tggatttatgtggccttgatatggagatggaatcaacacagcatgtggtttt |
171 |
Q |
| |
|
|||||| || ||||||||| |||| ||||||| ||||||||||||| |||| |
|
|
| T |
1265 |
tggattgatatggccttgagctggatatggaatgaacacagcatgtgatttt |
1316 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 3e-37; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 20 - 171
Target Start/End: Original strand, 1675928 - 1676079
Alignment:
| Q |
20 |
ttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaacaa |
119 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| || |||||| | | | ||||||||||||| ||||||||||||||| ||||| |
|
|
| T |
1675928 |
ttggacctcttgatttgagcaaacgtttgtgattgtattcagtgttgacataggttacatgagagcctctaaggtgaataagttttgctagtttgaacaa |
1676027 |
T |
|
| Q |
120 |
tggatttatgtggccttgatatggagatggaatcaacacagcatgtggtttt |
171 |
Q |
| |
|
|||||| || ||||||||| |||| ||||||| ||||||||||||| |||| |
|
|
| T |
1676028 |
tggattgatatggccttgagctggatatggaatgaacacagcatgtgatttt |
1676079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 20862531 - 20862378
Alignment:
| Q |
20 |
ttggacctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaacaa |
119 |
Q |
| |
|
||||||| |||| || ||||| ||||| |||||||||||||| || || || ||||||||||| |||||||||||||| |||||||||||||| |||| |
|
|
| T |
20862531 |
ttggacccattgacttaagcaagcgtttgtgattgtattcagtattgacaaatgttatgtaaaagcctctaaggtgaagtagttttgctagttttaacat |
20862432 |
T |
|
| Q |
120 |
tggatttatgtggccttgatatggagatggaatcaacacagcatgtggtttttt |
173 |
Q |
| |
|
|||||| || || |||||| |||| ||||| | ||||| |||||||||||||| |
|
|
| T |
20862431 |
tggattgatatgaccttgaagtggatatggagttaacactgcatgtggtttttt |
20862378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 433 - 502
Target Start/End: Original strand, 36447704 - 36447773
Alignment:
| Q |
433 |
aaaagtgcgttgaatataaaattatttgtttttatatacatttacgtataattgagttgaacaataaatt |
502 |
Q |
| |
|
||||||| |||||||||||||| |||||| |||| ||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
36447704 |
aaaagtgagttgaatataaaatgatttgtgtttagatacatttatgtataactgagttgaataataaatt |
36447773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 26 - 164
Target Start/End: Original strand, 24104508 - 24104646
Alignment:
| Q |
26 |
ctcttgatttgagcaaacgtttatgattgtattcagtgttaacgaaggttatgtaaaatcctctaaggtgaagaagttttgctagtttcaacaatggatt |
125 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||||| ||||| ||||||||||||| ||| ||||||||||||||||| ||| ||||||| ||||||| ||| |
|
|
| T |
24104508 |
ctcttgattcgagcaagcgtttgtgattgtattcggtgttcacgaaggttatgtgaaagcctctaaggtgaagaagctttcctagtttgaacaatgcatt |
24104607 |
T |
|
| Q |
126 |
tatgtggccttgatatggagatggaatcaacacagcatg |
164 |
Q |
| |
|
|| || |||||| |||||| |||||||||||||||||| |
|
|
| T |
24104608 |
gatatgaccttgaaatggagctggaatcaacacagcatg |
24104646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 486 - 523
Target Start/End: Original strand, 25358483 - 25358520
Alignment:
| Q |
486 |
gagttgaacaataaattgaagactaaaaatcaattata |
523 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25358483 |
gagttgaacaataaatttaagactaaaaatcaattata |
25358520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 520
Target Start/End: Complemental strand, 16008995 - 16008943
Alignment:
| Q |
468 |
atacatttacgtataattgagttgaacaataaattgaagactaaaaatcaatt |
520 |
Q |
| |
|
||||||| | |||||| ||||||||||||||||| |||||||| |||||||| |
|
|
| T |
16008995 |
atacattcatgtataagtgagttgaacaataaatccaagactaagaatcaatt |
16008943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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