View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19678_low_15 (Length: 522)
Name: NF19678_low_15
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19678_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 224 - 504
Target Start/End: Complemental strand, 48697511 - 48697231
Alignment:
| Q |
224 |
acctttgctaaggaaacacacaaggcatgtaaggtctttgttttgaaaattgatacttgtgaaagtgatggaactaaaaaagtaaacagatcttaaaatg |
323 |
Q |
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| T |
48697511 |
acctttgctaaggaaacacacaaggcatgcaaggtctttgttttgaaaattgatacttgtgaaagtgatggaactaaaaaagtaaacagatcttaaaatg |
48697412 |
T |
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| Q |
324 |
acatattttagcagaattcagattaatttttagtatctcacgcagcctaaaactgagattgaaatgcttaccagaaatttccaatnnnnnnnctcagtta |
423 |
Q |
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| T |
48697411 |
acatatttgagcagaattcagattaatttttagtatctcacgcagcctaaaactgagattgaaatgcttaccagaaatttccaataaaaaaactcagtta |
48697312 |
T |
|
| Q |
424 |
ctatttacatacatcactgaccttggaagaatcaagcttagtaaacttttttgaaatnnnnnnngtcgtgtgatggctgtg |
504 |
Q |
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| T |
48697311 |
ctatttacatacatcactgaccttggaagaatcaagcttagtaaacttttttgaaataaaaaaagtcgtgtgatggctgtg |
48697231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 16 - 190
Target Start/End: Complemental strand, 48697685 - 48697514
Alignment:
| Q |
16 |
gatgaatgtgaccgaggaggaattcattcttgtatccatattttgaatgaaaatcaaggcttagttaattagtgatctctcttagaaacgtatcttggtg |
115 |
Q |
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| T |
48697685 |
gatgaatgtgaccgagga---attcattcttgtatccatattttgaatgaaaatcaaggcttagttaattagtgatctctcatagaaacgtatcttggtt |
48697589 |
T |
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| Q |
116 |
tttatttgtatttgtattggaattgataaagtggcatcatagaggttctatttataggtaaattctaaagccatg |
190 |
Q |
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| T |
48697588 |
tttatttgtatttgtatttgaattgataaagtggcatcatagaggttctatttataggtaaattctaaagccatg |
48697514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 217 - 352
Target Start/End: Complemental strand, 48700495 - 48700364
Alignment:
| Q |
217 |
aactcgtacctttgctaaggaaacacacaaggcatgtaaggt-ctttgttttgaaaattgatacttgtgaaagtgatggaactaaaaaagtaaacagatc |
315 |
Q |
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| T |
48700495 |
aactcataccttttctaaggaaacacacaaggcagggaagattctttgattt-aaaattgatacttatgaaagtgatggtactaataaagta---tga-c |
48700401 |
T |
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| Q |
316 |
ttaaaatgacatattttagcagaattcagattaattt |
352 |
Q |
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| T |
48700400 |
ttaaaatgacatatttgagcataattcagattaattt |
48700364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 258 - 408
Target Start/End: Complemental strand, 48693459 - 48693301
Alignment:
| Q |
258 |
tctttgttttgaaaattgatacttgtgaaagtgatggaactaaaaaagtaaacagatct--------taaaatgacatattttagcagaattcagattaa |
349 |
Q |
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| T |
48693459 |
tctttgatttgaaaaatgatacttatgaaagtgatgatactaataaagtaaagagatctggactacttaaaatgacatatttgagcagaattcagattaa |
48693360 |
T |
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| Q |
350 |
tttttagtatctcacgcagcctaaaactgagattgaaatgcttaccagaaatttccaat |
408 |
Q |
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| T |
48693359 |
tttatgatgtttcacgcagcctgaagctgaggttgaatttcctaccaaaaatttccaat |
48693301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 48687283 - 48687222
Alignment:
| Q |
137 |
attgataaagtggcatcatagaggttctatttataggtaaattctaaagccatgtgacacta |
198 |
Q |
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| T |
48687283 |
attgatgaagtggcattatagatgttccatttataggtaaattctaaaaccatgtgacacta |
48687222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 315 - 377
Target Start/End: Complemental strand, 48687104 - 48687042
Alignment:
| Q |
315 |
cttaaaatgacatattttagcagaattcagattaatttttagtatctcacgcagcctaaaact |
377 |
Q |
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| T |
48687104 |
cttaaaatgacatatttgagcagaattcagactaatttgtaatatgtcacgcagccttaaact |
48687042 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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