View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19678_low_19 (Length: 447)

Name: NF19678_low_19
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19678_low_19
NF19678_low_19
[»] chr5 (7 HSPs)
chr5 (79-433)||(18192241-18192600)
chr5 (79-243)||(18196774-18196939)
chr5 (101-243)||(18187248-18187394)
chr5 (296-393)||(18187459-18187554)
chr5 (327-393)||(18229109-18229175)
chr5 (296-393)||(18197013-18197108)
chr5 (181-243)||(18228965-18229028)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 79 - 433
Target Start/End: Original strand, 18192241 - 18192600
Alignment:
Q  79 cactatctttacaattacgtgggtgaatccatctgcacactaagatctcacaggccacaaaaatttgtggctcataag-cttccacttttctgatgtggc 177  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||  ||||||||||||| ||  |||||||||||||||||||||    
T  18192241 cactatctttacaattacgtgggtgaatccagctgcacactaagatctcacag-ccacagcaatttgtggctcacaaaacttccacttttctgatgtggc 18192339  T
Q  178 attgctttccaactttttgacctttataaaacttcttcacataaacacataaaccattgtacctcc--nnnnnnnnnnnnnnnnncttttcttcattatc 275  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||                   |||||||||| ||||    
T  18192340 attgctttccaactttttgacctttataaaacttcttcacataaacacataaaccatagtacctccctctctctctctttctctccttttcttcagtatc 18192439  T
Q  276 aagtaaacagaacnnnnnnncaacaaaaacttcttcaacatatataccagagagatgactaatgattcaaccataaagcttttcgggagaacaatttttc 375  Q
    |||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18192440 aagtaaacagaacaaaaaaacaacaaaaacttcttcaacatatataccagagagatgactaatgattcaaccataaagcttttcgggagaacaatttttc 18192539  T
Q  376 aaacacgcaacaccgatgattattcctcagagtttt---ctcctcttgctcatgaagattt 433  Q
    |||||||||||||||| ||||||||||| |||||||   ||||||||| ||||||||||||    
T  18192540 aaacacgcaacaccgacgattattcctcggagttttctcctcctcttggtcatgaagattt 18192600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 79 - 243
Target Start/End: Original strand, 18196774 - 18196939
Alignment:
Q  79 cactatctttacaattacgtgggtgaatccatctgcacactaagatctcacaggccacaaaaatttgtggctcataag-cttccacttttctgatgtggc 177  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||||||||||    
T  18196774 cactatctttacaattaagtgtgtgaatccatctgcacactaagatctcacaggccacaaaaatttgtggctcacaaaacttccacttttctgatgtggc 18196873  T
Q  178 attgctttccaactttttgacctttataaaacttcttcacataaacacataaaccattgtacctcc 243  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18196874 attgctttccaactttttgacctttataaaacttcttcacagaaacacataaaccattgtacctcc 18196939  T

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Target: chr5; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 101 - 243
Target Start/End: Original strand, 18187248 - 18187394
Alignment:
Q  101 gtgaatccatctgcacactaagatctcacaggccacaaaaatttgtggctcataag-cttccacttttctgatgtggcattgctttcc---aactttttg 196  Q
    ||||||||| ||| |||||||||||||| |||||| || ||||||||||||| ||  ||| | ||||||||||||||| | ||||||    |||||||||    
T  18187248 gtgaatccagctgaacactaagatctcataggccaaaacaatttgtggctcacaaaactttcccttttctgatgtggcttggctttcttctaactttttg 18187347  T
Q  197 acctttataaaacttcttcacataaacacataaaccattgtacctcc 243  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||    
T  18187348 acctatataaaacctcttcacataaacacataaaccattgtacctcc 18187394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 296 - 393
Target Start/End: Original strand, 18187459 - 18187554
Alignment:
Q  296 caacaaaaacttcttcaacatatataccagagagatgactaatgattcaaccataaagcttttcgggagaacaatttttcaaacacgcaacaccgatg 393  Q
    |||||||||||||||||||||||||||| ||||  ||||||||||||||||||| ||||||||||||||||| |||||||||| || |||||||||||    
T  18187459 caacaaaaacttcttcaacatatatacctgaga--tgactaatgattcaaccatgaagcttttcgggagaaccatttttcaaaaacacaacaccgatg 18187554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 327 - 393
Target Start/End: Original strand, 18229109 - 18229175
Alignment:
Q  327 gagatgactaatgattcaaccataaagcttttcgggagaacaatttttcaaacacgcaacaccgatg 393  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  18229109 gagatgactaatgattcaaccataaagcttttcgggagaaccatttttcaaacacacaacaccgatg 18229175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 296 - 393
Target Start/End: Original strand, 18197013 - 18197108
Alignment:
Q  296 caacaaaaacttcttcaacatatataccagagagatgactaatgattcaaccataaagcttttcgggagaacaatttttcaaacacgcaacaccgatg 393  Q
    |||||||||||| ||| ||| ||||||| ||||  ||| |||| |||||||||||| |||||| |||||||| ||||||  ||||| ||||| |||||    
T  18197013 caacaaaaacttattctacagatatacccgaga--tgattaataattcaaccataacgctttttgggagaacgatttttataacacacaacatcgatg 18197108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 18228965 - 18229028
Alignment:
Q  181 gctttccaactttttgacctttataaaa---cttcttcacataaacacataaaccattgtacctcc 243  Q
    |||||| ||||||||||||||||| |||   |||||||||||||||||  ||||||||||||||||    
T  18228965 gctttctaactttttgacctttatgaaacctcttcttcacataaacac--aaaccattgtacctcc 18229028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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