View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19678_low_21 (Length: 406)
Name: NF19678_low_21
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19678_low_21 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 15 - 406
Target Start/End: Complemental strand, 41487173 - 41486782
Alignment:
| Q |
15 |
cacagacaactgacaagactatgacatataacgtgtcaaactccgaccttaaattttttgatcaaacaagacttagatctttgaaagtctaatttggcat |
114 |
Q |
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| T |
41487173 |
cacaaacaactgacaagactatgacatataacgtgtcaaactcggaccttaaattttttgatcaaacaagacttagatctttgaaagtctaatttggcat |
41487074 |
T |
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| Q |
115 |
agcttattttcacccgtactagagatcacaatagtgttcaaggattaactttacgtcgaccggacaagaggcttggctaaaggcatacaccctaggtact |
214 |
Q |
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| T |
41487073 |
agcttattttcacccgtactagagatcacaatagtgttcaaggattaactttacgtcgaccggacaagaggcctggctaaaggcatacaccctaggtact |
41486974 |
T |
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| Q |
215 |
ctcataaatctaaagtaacacaaaatatggacatcaattgcaatatttgagaaattattgggaaaatttatagaaatattaaatgtctaaaatcatgcaa |
314 |
Q |
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| T |
41486973 |
cttataaatctaaagtaacacaaaatatggacatcaattgcaatatttgagaaattattgggaaaatttatagaaatattaaatgtctaaaatcatgcaa |
41486874 |
T |
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| Q |
315 |
ataaggaaaacttaagataatcactgtcacaaaaaatatctgatgtactttagaggattgaactggtacacagagcatcaagatataaatat |
406 |
Q |
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| T |
41486873 |
ataaggaaaacttaagataatcactgtcacaaaaaatatctgatgtactttagaggattgaactggtacacagagcatcaagatataaatat |
41486782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 215 - 340
Target Start/End: Complemental strand, 41488896 - 41488768
Alignment:
| Q |
215 |
ctcataaatctaaagtaacacaaaatatggacatcaattgcaatatttgagaaattattgggaaaattta---tagaaatattaaatgtctaaaatcatg |
311 |
Q |
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| T |
41488896 |
ctcataaatctatagtaacgcaacatatagacatcaattgcagtattttagaaattactgggaaaatgtacagaagaaatactagatgactaaaatcatg |
41488797 |
T |
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| Q |
312 |
caaataaggaaaacttaagataatcactg |
340 |
Q |
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| T |
41488796 |
caaataagcaaaatttaagataattactg |
41488768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 406
Target Start/End: Complemental strand, 41488726 - 41488681
Alignment:
| Q |
361 |
actttagaggattgaactggtacacagagcatcaagatataaatat |
406 |
Q |
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| T |
41488726 |
actttagaggattgaactggtatatagagcgtcaatatataaatat |
41488681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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