View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19678_low_23 (Length: 399)
Name: NF19678_low_23
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19678_low_23 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 16 - 378
Target Start/End: Original strand, 8789832 - 8790194
Alignment:
| Q |
16 |
tgaacaagtttaaaccaaagacaccatacattggaaggtgtcttctcaacacaaagatcactggtgatgatgcacctggtgaaacctggcacatggtttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8789832 |
tgaacaagtttaaaccaaagacaccatacattggaaggtgtcttctcaacacaaagatcactggtgatgatgcacctggtgaaacctggcacatggtttt |
8789931 |
T |
|
| Q |
116 |
cagcactgagggtgagtgttctcatgcatttcctctctattatttcttttacattcactattcatcacaaggtcttaaattacggttgcatcgcaatttg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8789932 |
cagcactgagggtgagtgttctcatgcatttcctctctattatttcttttacattcactattcatcacaaggtcttaaattacggttgcatcgcaatttg |
8790031 |
T |
|
| Q |
216 |
ttagagtagaaaatccgattctaaaggattttgataaataaaaacacaaggacacaacaattgatcacaaagttcggtcaattgtgactttgtctctgac |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8790032 |
ttagagtagaaaatccgattctaaaggattttgataaataaaaacacaaggacacaacaattgatcacaaagttcggtcaattgtgactttgtctctgac |
8790131 |
T |
|
| Q |
316 |
accagaatgactggtgtagttttctagtattatgcattgaattagggtaacacagtacaaaac |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8790132 |
accagaatgactggtgtagttttctagtattatgcattgaattagggtaacacagtacaaaac |
8790194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 249 - 341
Target Start/End: Original strand, 4918230 - 4918322
Alignment:
| Q |
249 |
ataaataaaaacacaaggacacaacaattgatcacaaagttcggtcaattgtgactttgtctctgacaccagaatgactggtgtagttttcta |
341 |
Q |
| |
|
||||| ||| ||||||| |||||||||||||||||| ||||||| |||||||| | | ||||||||| ||| ||||| |||||||||||| |
|
|
| T |
4918230 |
ataaaaaaacacacaagaacacaacaattgatcacagagttcggccaattgtgcatatatctctgacaatagatagactgttgtagttttcta |
4918322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University