View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19678_low_25 (Length: 382)

Name: NF19678_low_25
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19678_low_25
NF19678_low_25
[»] chr6 (1 HSPs)
chr6 (19-373)||(9928939-9929312)


Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 19 - 373
Target Start/End: Original strand, 9928939 - 9929312
Alignment:
Q  19 agttgcttccttctaatgtggtcatggagaattaactctaaaaatacattgattgttatagttttctcactaatttaaacttggagatgataattgacca 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9928939 agttgcttccttctaatgtggtcatggagaattaactctaaaaatacattgattgttatagttttctcactaatttaaacttggagatgataattgacca 9929038  T
Q  119 tgatactttatttactaagatagttgtctatatggtaataatacaactcata-nnnnnnngtttaagcaaagtatcatttgcttac-------------a 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||             |    
T  9929039 tgatactttatttactaagatagttgtctatatggtaataatacaactcatattttttttgtttaagcaaagtatcatttgcttacaattgcaaaaatta 9929138  T
Q  205 attgcaaaaattaatatcacgaggcaactaaaatctatttaaaatttgnnnnnnnnagggaaaactctatttaagacgttagct----acagcttatcca 300  Q
    |||||||||||||||||| | |||||| ||||||||||||||||||||        ||||||||||||||||||||||||||||    ||||||| ||||    
T  9929139 attgcaaaaattaatatctccaggcaaataaaatctatttaaaatttgttttttttagggaaaactctatttaagacgttagctacagacagcttctcca 9929238  T
Q  301 gataaaatgtttttctttgtacggatataagatcaataattaattaattgtccattactttttt-atcctatga 373  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||||||||    
T  9929239 aataaaatgtttttctttgtacggatataagatcaataattaattaattggctattacttttttcatcctatga 9929312  T

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