View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19678_low_26 (Length: 319)
Name: NF19678_low_26
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19678_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 45068702 - 45069003
Alignment:
| Q |
1 |
aatctgttaaaactgcattgtgttttcggcaattgattgcagggtagtcaaagctgttcaatttaatactacttggttctctgcattctgctagtgatac |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45068702 |
aatctgttaaaactgcattgtgttttcggcaattgattgcatggtagtcaaagctgttcaatttaatactacttggttctctgcattctgctagtgatac |
45068801 |
T |
|
| Q |
101 |
caatatcagaactatagaaatcacacaaataacctgcataagacaacagtaattaatctatgcatgcagaaaataaaaacaaccacctgtaacatttatt |
200 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
45068802 |
caatatcaaaactatagaaatcacacaaataacctgcataaaacaacagtaattaatctatgcatacagaaaataaaaacaaccacctgtaacatttatt |
45068901 |
T |
|
| Q |
201 |
ttcttagacatagaacaggagtatgcacaaagagaattacataggaatttccgaatattgcactcttcatgttctgatgagacatggcacatgggtaaat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45068902 |
ttcttagacatagaacaggagtatgcacaaagagaattacataggaatttccgaatattgcactcttcatgttctgatgagacatggcacatgggtagat |
45069001 |
T |
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| Q |
301 |
tt |
302 |
Q |
| |
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|| |
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| T |
45069002 |
tt |
45069003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 45079463 - 45079666
Alignment:
| Q |
1 |
aatctgttaaaactgcattgtgttttcggcaattgattgcagggtagtcaaagctgttcaatttaatactacttggttctctgcattctgctagtgatac |
100 |
Q |
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||||||||||||||||| ||||||||| ||||||||||||||| || |||||| ||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
45079463 |
aatctgttaaaactgcactgtgttttctgcaattgattgcaggataatcaaagttgttcaatttaatactacttggtactctgcattctgctagtgatcc |
45079562 |
T |
|
| Q |
101 |
caatatcagaactatagaaatcacacaaataacctgcataagacaacagtaattaatctatgcatgcagaaaataaaaacaaccacctgtaacatttatt |
200 |
Q |
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|||||||||||||| ||| ||||||| ||||||||||| || |||| || || | |||| ||| |||||||||| ||| || ||| |||||| ||||| |
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| T |
45079563 |
caatatcagaactacagatatcacaccaataacctgcacaaaacaatggttataagtcta-gcacgcagaaaatataaataatcacatgtaacgtttata |
45079661 |
T |
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| Q |
201 |
ttctt |
205 |
Q |
| |
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||||| |
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| T |
45079662 |
ttctt |
45079666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 45076339 - 45076476
Alignment:
| Q |
1 |
aatctgttaaaactgcattgtgttttcggcaattgattgcagggtagtcaaagctgttcaatttaatactacttggttctctgcattctgctagtgatac |
100 |
Q |
| |
|
||||||| ||||||||| ||||||||| ||||||||| || || || |||||| | ||||||||| |||||||||||||| |||||||||||| ||| | |
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| T |
45076339 |
aatctgtcaaaactgcactgtgttttctgcaattgatagctggataatcaaagttcttcaatttactactacttggttctttgcattctgctaatgaacc |
45076438 |
T |
|
| Q |
101 |
caatatcagaactatagaaatcacacaaataacctgca |
138 |
Q |
| |
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|||||||||| || ||| ||||||| ||||||||||| |
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| T |
45076439 |
aaatatcagaagtacagagatcacaccaataacctgca |
45076476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 45083754 - 45083915
Alignment:
| Q |
1 |
aatctgttaaaactgcattgtgttttcggcaattgattgcagggtagtcaaagctgttcaatttaatactacttggttctctgcattctgctagtgatac |
100 |
Q |
| |
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||||||| ||||||||| ||||||||| ||||||||| || || || |||||| | ||||||||| || |||||||| ||||||||||||||||| | | |
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| T |
45083754 |
aatctgtcaaaactgcactgtgttttctgcaattgatagctggataatcaaagttattcaatttactaatacttggtattctgcattctgctagtgttcc |
45083853 |
T |
|
| Q |
101 |
caatatcagaactatagaaatcacacaaataacctgcataagacaacagtaattaatctatg |
162 |
Q |
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|||||||| ||||| ||| ||||||| |||||||||| || |||| ||| || |||||||| |
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| T |
45083854 |
caatatcacaactacagagatcacacgtataacctgcacaaaacaatagtgataaatctatg |
45083915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 222 - 290
Target Start/End: Original strand, 45079737 - 45079805
Alignment:
| Q |
222 |
tatgcacaaagagaattacataggaatttccgaatattgcactcttcatgttctgatgagacatggcac |
290 |
Q |
| |
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|||||| ||||| |||||||||||||||| ||||| ||||||||||||| || |||||||||||||||| |
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| T |
45079737 |
tatgcagaaagaaaattacataggaattttcgaatcttgcactcttcatattttgatgagacatggcac |
45079805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 212
Target Start/End: Original strand, 34506189 - 34506321
Alignment:
| Q |
82 |
tgcattctgctagtgataccaatatcagaactatagaaatcacacaaataacctgcataagacaacagtaat-taa-tctatgcatgcagaaaataaaaa |
179 |
Q |
| |
|
||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||| || |||| |||| ||| | |||| | ||||||||||||| |
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| T |
34506189 |
tgcattctgctagtgatccaaatatcaaaactatagaaatcacacaaataacctgcacaaaacaatgataatataagtttatggacacagaaaataaaaa |
34506288 |
T |
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| Q |
180 |
caaccacctgtaacatttattttcttagacata |
212 |
Q |
| |
|
||| || |||||| |||||||||||||||||| |
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| T |
34506289 |
taactacatgtaacgtttattttcttagacata |
34506321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 34506388 - 34506444
Alignment:
| Q |
222 |
tatgcacaaagagaattacataggaatttccgaatattgcactcttcatgttctgat |
278 |
Q |
| |
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||||||||| || ||||||| |||||||| ||||| ||| ||||||||||||||||| |
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| T |
34506388 |
tatgcacaatgaaaattacaaaggaattttcgaatcttggactcttcatgttctgat |
34506444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 34506135 - 34506185
Alignment:
| Q |
1 |
aatctgttaaaactgcattgtgttttcggcaattgattgcagggtagtcaa |
51 |
Q |
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||||||| ||||||||| ||||||||| ||||||||||||| |||| |||| |
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| T |
34506135 |
aatctgtcaaaactgcactgtgttttctgcaattgattgcaaggtaatcaa |
34506185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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