View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19678_low_27 (Length: 315)

Name: NF19678_low_27
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19678_low_27
NF19678_low_27
[»] chr6 (2 HSPs)
chr6 (201-304)||(29978115-29978218)
chr6 (17-173)||(29978439-29978585)
[»] chr3 (1 HSPs)
chr3 (74-173)||(23779220-23779319)
[»] chr4 (4 HSPs)
chr4 (86-173)||(48479949-48480036)
chr4 (86-173)||(42502587-42502673)
chr4 (208-250)||(42502513-42502555)
chr4 (207-247)||(48480074-48480114)
[»] chr2 (2 HSPs)
chr2 (74-173)||(3192549-3192648)
chr2 (198-237)||(23997154-23997193)
[»] chr7 (2 HSPs)
chr7 (86-173)||(42429325-42429412)
chr7 (197-250)||(42429244-42429297)
[»] chr8 (2 HSPs)
chr8 (197-250)||(10072256-10072309)
chr8 (201-233)||(22957118-22957150)


Alignment Details
Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 201 - 304
Target Start/End: Complemental strand, 29978218 - 29978115
Alignment:
Q  201 gtgtgtctaaccactttttatttgtgtttatgactatacaagtatttctcgtgcattggtactgaggagatttttgtggtgctcatgtcatgtatgtgtt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||||| |||    
T  29978218 gtgtgtctaaccactttttatttgtgtttatgactatacaagtatttttcgtgcattggtgctgaggagacttttgtggtgctcatgtcatgtatgcgtt 29978119  T
Q  301 tcat 304  Q
    ||||    
T  29978118 tcat 29978115  T

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Target: chr6; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 17 - 173
Target Start/End: Complemental strand, 29978585 - 29978439
Alignment:
Q  17 aaaaatgtgttcaactatatttattgtgagtatcgagtagtagtgtgcattcagagtaagtcttgcatcagcacaaacacaaagagaaagcagttagaca 116  Q
    ||||||||||||||||||  |||||||||||||||||||| ||||||||||  || |||||||||| | |||||||||||||||| |||| ||||||| |    
T  29978585 aaaaatgtgttcaactat--ttattgtgagtatcgagtagcagtgtgcattgggattaagtcttgcttgagcacaaacacaaagaaaaagtagttagata 29978488  T
Q  117 cactcacatggatcgaagaaaataaatgataaagaatttagtgtcatcatttaatta 173  Q
     ||        || |||||||||||||||||||||||||||| ||||||||||||||    
T  29978487 tac--------attgaagaaaataaatgataaagaatttagtctcatcatttaatta 29978439  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 173
Target Start/End: Complemental strand, 23779319 - 23779220
Alignment:
Q  74 aagtcttgcatcagcacaaacacaaagagaaagcagttagacacactcacatggatcgaagaaaataaatgataaagaatttagtgtcatcatttaatta 173  Q
    ||||||||| | |||||||||||||| | ||||  ||||| ||||||||||| ||| |||||||| |||||||||||||||||||  ||||||| |||||    
T  23779319 aagtcttgcttgagcacaaacacaaataaaaagtggttaggcacactcacatagatggaagaaaagaaatgataaagaatttagtcccatcattcaatta 23779220  T

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Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 86 - 173
Target Start/End: Original strand, 48479949 - 48480036
Alignment:
Q  86 agcacaaacacaaagagaaagcagttagacacactcacatggatcgaagaaaataaatgataaagaatttagtgtcatcatttaatta 173  Q
    |||||||||| ||| | ||||  ||||| |||||| |||||||| ||||||||||||||||||||||||||||  ||||||| |||||    
T  48479949 agcacaaacataaataaaaagtggttaggcacactaacatggatggaagaaaataaatgataaagaatttagttacatcattcaatta 48480036  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 173
Target Start/End: Complemental strand, 42502673 - 42502587
Alignment:
Q  86 agcacaaacacaaagagaaagcagttagacacactcacatggatcgaagaaaataaatgataaagaatttagtgtcatcatttaatta 173  Q
    |||||||||||||| | ||||  |||||| ||||| |||| ||| |||||||||||||||||||||| ||||| |||||||| |||||    
T  42502673 agcacaaacacaaataaaaagtggttagaaacactaacatagatggaagaaaataaatgataaagaa-ttagtctcatcattcaatta 42502587  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 208 - 250
Target Start/End: Complemental strand, 42502555 - 42502513
Alignment:
Q  208 taaccactttttatttgtgtttatgactatacaagtatttctc 250  Q
    |||||||||||||||||||||| |||||||| |||||||||||    
T  42502555 taaccactttttatttgtgtttgtgactatataagtatttctc 42502513  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 207 - 247
Target Start/End: Original strand, 48480074 - 48480114
Alignment:
Q  207 ctaaccactttttatttgtgtttatgactatacaagtattt 247  Q
    ||||||||||| ||||||||||| |||||||| ||||||||    
T  48480074 ctaaccactttatatttgtgtttgtgactatataagtattt 48480114  T

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Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 74 - 173
Target Start/End: Complemental strand, 3192648 - 3192549
Alignment:
Q  74 aagtcttgcatcagcacaaacacaaagagaaagcagttagacacactcacatggatcgaagaaaataaatgataaagaatttagtgtcatcatttaatta 173  Q
    ||||||||| | |||||||||||||| | ||||   ||||| ||||||||||| || ||||||||||||| |||||||||||||| |||| ||| |||||    
T  3192648 aagtcttgcttaagcacaaacacaaataaaaagtgcttagatacactcacatgaatggaagaaaataaataataaagaatttagtttcattattcaatta 3192549  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 198 - 237
Target Start/End: Complemental strand, 23997193 - 23997154
Alignment:
Q  198 tgtgtgtgtctaaccactttttatttgtgtttatgactat 237  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  23997193 tgtgtgtgtctaaccactttttatttgtgtttatgactat 23997154  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 86 - 173
Target Start/End: Complemental strand, 42429412 - 42429325
Alignment:
Q  86 agcacaaacacaaagagaaagcagttagacacactcacatggatcgaagaaaataaatgataaagaatttagtgtcatcatttaatta 173  Q
    |||||||| ||||| | |||| |||||||||| || |||| |||  |||||||||||||||||||||||||||  ||||||| |||||    
T  42429412 agcacaaaaacaaataaaaagtagttagacacgcttacatagatgaaagaaaataaatgataaagaatttagtcacatcattcaatta 42429325  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 42429297 - 42429244
Alignment:
Q  197 gtgtgtgtgtctaaccactttttatttgtgtttatgactatacaagtatttctc 250  Q
    ||||||||  ||||||||||||||| ||||||| |||||||| |||||||||||    
T  42429297 gtgtgtgtacctaaccactttttatctgtgtttgtgactatataagtatttctc 42429244  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 10072256 - 10072309
Alignment:
Q  197 gtgtgtgtgtctaaccactttttatttgtgtttatgactatacaagtatttctc 250  Q
    ||||||| |||||||||| |||||||| ||||| |||||||| |||||||||||    
T  10072256 gtgtgtgcgtctaaccacgttttatttatgtttgtgactatataagtatttctc 10072309  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 233
Target Start/End: Complemental strand, 22957150 - 22957118
Alignment:
Q  201 gtgtgtctaaccactttttatttgtgtttatga 233  Q
    ||||||||||||||||||||||||| |||||||    
T  22957150 gtgtgtctaaccactttttatttgtatttatga 22957118  T

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