View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19678_low_29 (Length: 311)

Name: NF19678_low_29
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19678_low_29
NF19678_low_29
[»] chr2 (1 HSPs)
chr2 (1-294)||(37715092-37715388)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 37715388 - 37715092
Alignment:
Q  1 ttaattagtcgtatct--agaaatttannnnnnnaattttctgttggaataaatgaagaaaaaagtcggacttttctttgaaaaa-attgaattgaatga 97  Q
    ||||||||||||||||  |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  37715388 ttaattagtcgtatctctagaaatttatttttttaattttctgttggaataaatgaagaaaaaagtcggacttttctttgaaaaagattgaattgaatga 37715289  T
Q  98 cttcagtaacaatcactactaaaaagtaaaaacagttgaaatattgacaaaaattagagacgaaaaatttaacattggttagtacatttttcgtctctaa 197  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37715288 cttcagtaacaatcactactaaaaagtaaaaacagttgaaatatcgacaaaaattagagacgaaaaatttaacattggttagtacatttttcgtctctaa 37715189  T
Q  198 tacttgccacataattagagatggatattgcattttttcatttctaaattttcatagcgatttaaactttttcaaattgtgatcaaatggtatatat 294  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37715188 tacttgccacataattagagatggatattgcattttttcatttctaaattttcatagcgatttaaactttttcaaattgtgatcaaatggtatatat 37715092  T

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