View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19678_low_3 (Length: 903)

Name: NF19678_low_3
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19678_low_3
NF19678_low_3
[»] chr1 (6 HSPs)
chr1 (373-884)||(7409888-7410397)
chr1 (155-193)||(794955-794993)
chr1 (155-194)||(18808819-18808858)
chr1 (157-194)||(1585901-1585938)
chr1 (155-189)||(7409832-7409866)
chr1 (156-189)||(26653950-26653983)
[»] chr4 (7 HSPs)
chr4 (155-194)||(21555421-21555460)
chr4 (155-189)||(23249516-23249550)
chr4 (155-189)||(27733422-27733456)
chr4 (155-189)||(36609422-36609456)
chr4 (155-194)||(827870-827909)
chr4 (155-194)||(12701079-12701118)
chr4 (155-194)||(56100147-56100186)
[»] chr7 (3 HSPs)
chr7 (155-192)||(41326084-41326121)
chr7 (155-194)||(40337075-40337114)
chr7 (155-189)||(8163652-8163686)
[»] scaffold0306 (1 HSPs)
scaffold0306 (155-194)||(13065-13104)
[»] scaffold0302 (1 HSPs)
scaffold0302 (155-194)||(18512-18551)
[»] scaffold0152 (1 HSPs)
scaffold0152 (155-194)||(22223-22262)
[»] chr8 (6 HSPs)
chr8 (155-194)||(4623859-4623898)
chr8 (155-194)||(23403639-23403678)
chr8 (155-194)||(30204657-30204696)
chr8 (155-194)||(36470144-36470183)
chr8 (155-191)||(16656022-16656058)
chr8 (155-184)||(36046538-36046567)
[»] chr3 (8 HSPs)
chr3 (155-194)||(36404231-36404270)
chr3 (155-189)||(47599410-47599444)
chr3 (155-194)||(16353498-16353537)
chr3 (155-194)||(29360523-29360562)
chr3 (155-194)||(35534523-35534562)
chr3 (155-190)||(39392002-39392037)
chr3 (155-194)||(45603025-45603064)
chr3 (155-194)||(46487310-46487349)
[»] chr2 (10 HSPs)
chr2 (155-194)||(30609695-30609734)
chr2 (155-194)||(30757193-30757232)
chr2 (155-189)||(28107497-28107531)
chr2 (155-189)||(37060088-37060122)
chr2 (155-194)||(14786275-14786314)
chr2 (155-194)||(21423406-21423445)
chr2 (155-194)||(27004490-27004529)
chr2 (155-189)||(4382253-4382287)
chr2 (155-189)||(6974526-6974560)
chr2 (155-192)||(24475941-24475978)
[»] chr5 (5 HSPs)
chr5 (155-188)||(38451048-38451081)
chr5 (155-194)||(3729342-3729381)
chr5 (155-194)||(8159079-8159118)
chr5 (155-194)||(34766893-34766932)
chr5 (155-194)||(39508325-39508364)
[»] scaffold0025 (1 HSPs)
scaffold0025 (155-194)||(67913-67952)
[»] chr6 (3 HSPs)
chr6 (155-194)||(444562-444601)
chr6 (155-194)||(2814899-2814938)
chr6 (155-189)||(6200171-6200205)


Alignment Details
Target: chr1 (Bit Score: 468; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 373 - 884
Target Start/End: Original strand, 7409888 - 7410397
Alignment:
Q  373 tttttggtagcaaatattttttaagattgagataataattcgtcattgttaaaattcattaaccactagcttgagctcaattacttgattgcacaatatt 472  Q
    ||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  7409888 tttttggtagcaaatatttttaaa-attgagataataattcgtcattggtaaaattcattaaccactagcttgagctcaattacttgatcgcacaatatt 7409986  T
Q  473 ttatttaattataaataatctaaaatgataaaggctaattatgagagtttgtttcaatacaatccatactttgaaagtcgtgaaaatattgttagtaaac 572  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7409987 ttatttaattataaataatctaaaatgataaaggctaattatgagagtttgtttcaatacaatccatactttgaaagtcgtgaaaatattgttagtaaac 7410086  T
Q  573 atataactcaaattaaggataaagtgaaacaaagtcttttttctaaaagaagaaccaagatttccacaaaagaaaatgtctcccaatttgtaattgtaca 672  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  7410087 atataactcaaattaaggataaagtgaaacaaagtctttt-tctaaaagaagaaccaagatttccacaaaagaaaatgtctcccaatttgtaattctaca 7410185  T
Q  673 ctgaaatccagcataaaaggccactaatgctaccttaaaaagtgattctaccacttacctccttatctagatctctctcttcatatctctttacatttta 772  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  7410186 ctgaaatccagcataaaaggccactaatgctaccttaaaaagtgattccaccacttacctccttatctagatctctctcttcttatctctttacatttta 7410285  T
Q  773 attgtaaaataaaactatatatcggcgagttatgcatattaaaagctgtaaaaataggtactaataattgtttatgcagaagaaactaattacgtctctc 872  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7410286 attgtaaaataaaactatatatcggcgagttatgcatattaaaagctgtaaaaataggtactaataattgtttatgcagaagaaactaattatgtctctc 7410385  T
Q  873 tcatttgcacaa 884  Q
    ||||||||||||    
T  7410386 tcatttgcacaa 7410397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 193
Target Start/End: Complemental strand, 794993 - 794955
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagac 193  Q
    |||||||||||||||||||||||||||||||||||||||    
T  794993 ctaaaacatgtaaaaggataactattgtgagaagaagac 794955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 18808858 - 18808819
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  18808858 ctaaaacatataaaaggataactattgtgagaagaagact 18808819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 194
Target Start/End: Complemental strand, 1585938 - 1585901
Alignment:
Q  157 aaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    |||||||||||||||||||||||||| |||||||||||    
T  1585938 aaaacatgtaaaaggataactattgtaagaagaagact 1585901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 7409832 - 7409866
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaaga 189  Q
    |||||||||||||||||||||||||| ||||||||    
T  7409832 ctaaaacatgtaaaaggataactattatgagaaga 7409866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 156 - 189
Target Start/End: Original strand, 26653950 - 26653983
Alignment:
Q  156 taaaacatgtaaaaggataactattgtgagaaga 189  Q
    ||||||||||||||||||||| ||||||||||||    
T  26653950 taaaacatgtaaaaggataaccattgtgagaaga 26653983  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 21555460 - 21555421
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21555460 ctaaaacatgtaaaaggataactattgtgagaagaagact 21555421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 23249550 - 23249516
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaaga 189  Q
    |||||||||||||||||||||||||||||||||||    
T  23249550 ctaaaacatgtaaaaggataactattgtgagaaga 23249516  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 27733456 - 27733422
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaaga 189  Q
    |||||||||||||||||||||||||||||||||||    
T  27733456 ctaaaacatgtaaaaggataactattgtgagaaga 27733422  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 36609422 - 36609456
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaaga 189  Q
    |||||||||||||||||||||||||||||||||||    
T  36609422 ctaaaacatgtaaaaggataactattgtgagaaga 36609456  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 827909 - 827870
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  827909 ctaaaacatgtaaaaagataactattgtgagaagaggact 827870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 12701118 - 12701079
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    |||||||||||||||| ||||||||||| |||||||||||    
T  12701118 ctaaaacatgtaaaagaataactattgtaagaagaagact 12701079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 56100147 - 56100186
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||||||||||||||||||||| ||||||| ||||    
T  56100147 ctaaaacatgtaaaaggataactattgcgagaagaggact 56100186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 192
Target Start/End: Complemental strand, 41326121 - 41326084
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaaga 192  Q
    ||||||||||||||||||||||||||||||||||||||    
T  41326121 ctaaaacatgtaaaaggataactattgtgagaagaaga 41326084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 40337075 - 40337114
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  40337075 ctaaaacatgtaaaatgataactattgtgagaagatgact 40337114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 8163652 - 8163686
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaaga 189  Q
    ||||||||||||||| |||||||||||||||||||    
T  8163652 ctaaaacatgtaaaaagataactattgtgagaaga 8163686  T

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Target: scaffold0306 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 13065 - 13104
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  13065 ctaaaacatgtaaaaggataactattgtgagaagaggact 13104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 18512 - 18551
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  18512 ctaaaacatgtaaaaggataactattgtgagaagatgact 18551  T

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Target: scaffold0152 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 22262 - 22223
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  22262 ctaaaacatgtaaaaggataactattgtgagaagaggact 22223  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 4623859 - 4623898
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  4623859 ctaaaacatgtaaaaggataactattgtgagaagatgact 4623898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 23403678 - 23403639
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  23403678 ctaaaacatgtaaaaggataactattgtgagaagaggact 23403639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 30204657 - 30204696
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  30204657 ctaaaacatgtaaaaggataactattgtgagaagatgact 30204696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 36470144 - 36470183
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  36470144 ctaaaacatgtaaaaggataactattgtgagaagatgact 36470183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 191
Target Start/End: Complemental strand, 16656058 - 16656022
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaag 191  Q
    ||||||||||||||| |||||||||||||||||||||    
T  16656058 ctaaaacatgtaaaatgataactattgtgagaagaag 16656022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 184
Target Start/End: Original strand, 36046538 - 36046567
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtga 184  Q
    ||||||||||||||||||||||||||||||    
T  36046538 ctaaaacatgtaaaaggataactattgtga 36046567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 36404231 - 36404270
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  36404231 ctaaaacatgtaaaaggataactattgtgagaagaggact 36404270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 47599444 - 47599410
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaaga 189  Q
    |||||||||||||||||||||||||||||||||||    
T  47599444 ctaaaacatgtaaaaggataactattgtgagaaga 47599410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 16353498 - 16353537
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  16353498 ctaaaacatgtaaaaggataactattgtgaaaagaggact 16353537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 29360562 - 29360523
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    |||||||||||||||||||||||| |||||||||| ||||    
T  29360562 ctaaaacatgtaaaaggataactactgtgagaagaggact 29360523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 35534562 - 35534523
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  35534562 ctaaaacatataaaatgataactattgtgagaagaagact 35534523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 190
Target Start/End: Complemental strand, 39392037 - 39392002
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaa 190  Q
    |||||||||||||||||||||||||||||| |||||    
T  39392037 ctaaaacatgtaaaaggataactattgtgaaaagaa 39392002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 45603064 - 45603025
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    |||||||||||||||||||||||||||||| |||| ||||    
T  45603064 ctaaaacatgtaaaaggataactattgtgataagatgact 45603025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 46487349 - 46487310
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||| ||||| ||||||||||||||||||||||||    
T  46487349 ctaaaacatataaaatgataactattgtgagaagaagact 46487310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000008; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 30609695 - 30609734
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  30609695 ctaaaacatgtaaaatgataactattgtgagaagaagact 30609734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 30757193 - 30757232
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  30757193 ctaaaacatgtaaaaggataactattgtgagaagaggact 30757232  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 28107497 - 28107531
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaaga 189  Q
    |||||||||||||||||||||||||||||||||||    
T  28107497 ctaaaacatgtaaaaggataactattgtgagaaga 28107531  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 37060088 - 37060122
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaaga 189  Q
    |||||||||||||||||||||||||||||||||||    
T  37060088 ctaaaacatgtaaaaggataactattgtgagaaga 37060122  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 14786314 - 14786275
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  14786314 ctaaaacatgtaataggataactattgtgagaagaggact 14786275  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 21423445 - 21423406
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  21423445 ctaaaacatgtaataggataactattgtgagatgaagact 21423406  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 27004529 - 27004490
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  27004529 ctaaaacatataaaaggataactattgtgagaagaggact 27004490  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 189
Target Start/End: Complemental strand, 4382287 - 4382253
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaaga 189  Q
    ||||||||||||||| |||||||||||||||||||    
T  4382287 ctaaaacatgtaaaatgataactattgtgagaaga 4382253  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 6974526 - 6974560
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaaga 189  Q
    ||||||||||||||| |||||||||||||||||||    
T  6974526 ctaaaacatgtaaaatgataactattgtgagaaga 6974560  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 192
Target Start/End: Original strand, 24475941 - 24475978
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaaga 192  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  24475941 ctaaaacatgtaaaaagataactattgtgataagaaga 24475978  T

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Target: chr5 (Bit Score: 34; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 155 - 188
Target Start/End: Original strand, 38451048 - 38451081
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaag 188  Q
    ||||||||||||||||||||||||||||||||||    
T  38451048 ctaaaacatgtaaaaggataactattgtgagaag 38451081  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 3729342 - 3729381
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  3729342 ctaaaacatgtaaaaggataattattgtgagaagaggact 3729381  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 8159079 - 8159118
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||||||||||||||| ||||||||||||| ||||    
T  8159079 ctaaaacatgtaaaaggataattattgtgagaagaggact 8159118  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 34766893 - 34766932
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    |||||||||||||||| |||||||||||||||||| ||||    
T  34766893 ctaaaacatgtaaaagaataactattgtgagaagaggact 34766932  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 39508325 - 39508364
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  39508325 ctaaaacatgtaaaagaataactattgtgagaaaaagact 39508364  T

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Target: scaffold0025 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 67952 - 67913
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    |||||||||||||||||||||||||||| |||||| ||||    
T  67952 ctaaaacatgtaaaaggataactattgttagaagaggact 67913  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 444601 - 444562
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||||||| ||||||||||||||||||||| ||||    
T  444601 ctaaaacatgtaataggataactattgtgagaagaggact 444562  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Original strand, 2814899 - 2814938
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaagaagact 194  Q
    ||||||||||||||| ||||||||||||||||||| ||||    
T  2814899 ctaaaacatgtaaaatgataactattgtgagaagaggact 2814938  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 189
Target Start/End: Original strand, 6200171 - 6200205
Alignment:
Q  155 ctaaaacatgtaaaaggataactattgtgagaaga 189  Q
    |||||| ||||||||||||||||||||||||||||    
T  6200171 ctaaaatatgtaaaaggataactattgtgagaaga 6200205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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