View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19678_low_39 (Length: 252)
Name: NF19678_low_39
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19678_low_39 |
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Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 45049535 - 45049750
Alignment:
| Q |
22 |
atggggtacatgaataagaaccggttttcttacgtgcaactgcaactgttattctttttagcctgaatatgtcctttgcaatcttttttagtgaagtctt |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |
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| T |
45049535 |
atggggtacatgaataagaaccggttttcttacgtgcaactgcaactgttattctttttagtctgaatatgtcctttccaatcttttttagtgaagtctt |
45049634 |
T |
|
| Q |
122 |
ctataaatcgggacattagatacactttgtttatggtcaaatatgtacaggcatacttaatttgatgttagggttgtgaaaagatttgatagactgtaat |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45049635 |
ctataaatcgggacattagatacactttgtttatggtcaaatatgtacaggcatacttaatttgatgttagggttgtgaaaagatttgatagactgtaat |
45049734 |
T |
|
| Q |
222 |
gttggcatttactatt |
237 |
Q |
| |
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|||||||||||||||| |
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| T |
45049735 |
gttggcatttactatt |
45049750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 26126825 - 26127040
Alignment:
| Q |
22 |
atggggtacatgaataagaaccggttttcttacgtgcaactgcaactgttattctttttagcctgaatatgtcctttgcaatcttttttagtgaagtctt |
121 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26126825 |
atggggtacatgaataagaaccggttttcttacatgcaactgcaactgttattttttttagtctgaatatgtcctttgcaatcttttttagtgaagtctt |
26126924 |
T |
|
| Q |
122 |
ctataaatcgggacattagatacactttgtttatggtcaaatatgtacaggcatacttaatttgatgttagggttgtgaaaagatttgatagactgtaat |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26126925 |
atataaatcgggacattagatacactttgtttatggtcaaatatgtacaggcatacttaatttgatgttagggttgtgaaaagatttgatagactgtaat |
26127024 |
T |
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| Q |
222 |
gttggcatttactatt |
237 |
Q |
| |
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|||||||||||||||| |
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| T |
26127025 |
gttggcatttactatt |
26127040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 22 - 237
Target Start/End: Original strand, 26008439 - 26008654
Alignment:
| Q |
22 |
atggggtacatgaataagaaccggttttcttacgtgcaactgcaactgttattctttttagcctgaatatgtcctttgcaatcttttttagtgaagtctt |
121 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26008439 |
atggggtacatgaataagaaccggttttcttacatgcaactgcaactgttattttttttagtctgaatatgtcctttgcaatcttttttagtgaagtctt |
26008538 |
T |
|
| Q |
122 |
ctataaatcgggacattagatacactttgtttatggtcaaatatgtacaggcatacttaatttgatgttagggttgtgaaaagatttgatagactgtaat |
221 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26008539 |
atataaatcgggacattagatacactttgtttatggtcaaatatgtacagacatacttaatttgatgttagggttgtgaaaagatttgatagactgtaat |
26008638 |
T |
|
| Q |
222 |
gttggcatttactatt |
237 |
Q |
| |
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|||||||||||||||| |
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|
| T |
26008639 |
gttggcatttactatt |
26008654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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