View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19678_low_4 (Length: 877)

Name: NF19678_low_4
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19678_low_4
NF19678_low_4
[»] chr3 (9 HSPs)
chr3 (6-861)||(34986131-34986987)
chr3 (191-247)||(14782856-14782912)
chr3 (95-142)||(34986986-34987033)
chr3 (205-247)||(9198640-9198682)
chr3 (96-153)||(34987113-34987173)
chr3 (17-73)||(14782856-14782912)
chr3 (191-250)||(18268012-18268071)
chr3 (195-250)||(21768603-21768658)
chr3 (264-315)||(34986986-34987037)
[»] chr6 (4 HSPs)
chr6 (191-251)||(10764082-10764142)
chr6 (17-76)||(10764083-10764142)
chr6 (208-249)||(4012730-4012771)
chr6 (198-235)||(17421949-17421986)
[»] chr2 (1 HSPs)
chr2 (199-248)||(894057-894106)
[»] chr7 (1 HSPs)
chr7 (10-81)||(43919786-43919858)
[»] chr5 (1 HSPs)
chr5 (199-234)||(28173108-28173143)
[»] chr1 (4 HSPs)
chr1 (208-251)||(4796431-4796474)
chr1 (191-232)||(3412895-3412936)
chr1 (191-232)||(3433889-3433930)
chr1 (208-249)||(4795552-4795593)
[»] chr8 (2 HSPs)
chr8 (206-235)||(14226999-14227028)
chr8 (205-234)||(24362330-24362359)


Alignment Details
Target: chr3 (Bit Score: 833; Significance: 0; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 833; E-Value: 0
Query Start/End: Original strand, 6 - 861
Target Start/End: Complemental strand, 34986987 - 34986131
Alignment:
Q  6 cacagacacagacatgttgacaccggtaaaaa-tttgaaaaaatgaataaatctaacgtaaccacatgtgtcggtgtagtgccgatgtctgaaatgtaat 104  Q
    ||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  34986987 cacagacacagacatgttgacgccggtaaaaaatttgaaaaaatgaataaatctaacgtaatcacatgtgtcggtgtagtgccgatgtctgaaatgtaat 34986888  T
Q  105 tcttaaatccaataagttcagcaattaggatcaaatcataagaagcactgacacagacacagatactggcatcacgacactgacacacatgtcgacacgg 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34986887 tcttaaatccaataagttcagcaattaggatcaaatcataagaagcactgacacagacacagatactggcatcacgacactgacacacatgtcgacacgg 34986788  T
Q  205 gtaaaaatttgaaaaaatgaattaattgaacctaaccacatgtgtcatgtagtgtaggtgtcggaaatgtcaatcttaaatccaataagttcaacaatta 304  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34986787 gtaaaaatttgaaaaaatgaattaattgaacctaaccacatgtgtcatgtagtgtaggtgtcggaaatgtcaatcttaaatccaataagttcaacaatta 34986688  T
Q  305 ggatcaaatcatacggagcacggacaccaacaccgacgcgaacacaccttccgccaaaagtatcagtgctacagattcataactttggtgagcattcaac 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34986687 ggatcaaatcatacggagcacggacaccaacaccgacgcgaacacaccttccgccaaaagtatcagtgctacagattcataactttggtgagcattcaac 34986588  T
Q  405 gtatgtagcttattaagattcattttcgttcagaatgttgcaattactctagtggtagaaacatgaaagcgaaaacaaatcatcactggttaattaaacg 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34986587 gtatgtagcttattaagattcattttcgttcagaatgttgcaattactctagtggtagaaacatgaaagcgaaaacaaatcatcactggttaattaaacg 34986488  T
Q  505 attctattataataatccgattaaaattaaagtaacagattaacaattacttcgtccaaatcaaaacggtgataatcattcaaattgataactgatagaa 604  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34986487 attccattataataatccgattaaaattaaagtaacagattaacaattacttcgtccaaatcaaaacggtgataatcattcaaattgataactgatagaa 34986388  T
Q  605 cagaaaaacgaatttcgaaactaaattgaacgcaatatgcatgaaattaaaacgaacagtgaaaatcttttcgcagtgattgattaaaggaatgcgaaaa 704  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34986387 cagaaaaacgaatttcgaaactaaattgaacgcaatatgcatgaaattaaaacgaacagtgaaaatcttttcgcagtgattgattaaaggaatgcgaaaa 34986288  T
Q  705 gtgagttatgaaagaaattgaagcttacttcgcgagctttgactttatccgacgagagtttttctacaatctcacgaacgtctctggaactgactttcgc 804  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34986287 gtgagttatgaaagaaattgaagcttacttcgcgagctttgactttatccgacgagagtttttctacaatctcacgaacgtctctggaactgactttcgc 34986188  T
Q  805 cattgtcgctacgagagtagcggttacacatgaaatgcaaaaaatgaaggtagtaga 861  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34986187 cattgtcgctacgagagtagcggttacacatgaaatgcaagaaatgaaggtagtaga 34986131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 191 - 247
Target Start/End: Complemental strand, 14782912 - 14782856
Alignment:
Q  191 acatgtcgacacgggtaaaaatttgaaaaaatgaattaattgaacctaaccacatgt 247  Q
    |||||| || || |||||||||||||||||||||||||||||||| ||| |||||||    
T  14782912 acatgttgatactggtaaaaatttgaaaaaatgaattaattgaacgtaatcacatgt 14782856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 95 - 142
Target Start/End: Complemental strand, 34987033 - 34986986
Alignment:
Q  95 gaaatgtaattcttaaatccaataagttcagcaattaggatcaaatca 142  Q
    ||||||| |||||||||||||| |||||||||||||||||| ||||||    
T  34987033 gaaatgttattcttaaatccaaaaagttcagcaattaggattaaatca 34986986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 9198682 - 9198640
Alignment:
Q  205 gtaaaaatttgaaaaaatgaattaattgaacctaaccacatgt 247  Q
    ||||||||||||||||||||||||||||||| ||| |||||||    
T  9198682 gtaaaaatttgaaaaaatgaattaattgaacataatcacatgt 9198640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 153
Target Start/End: Complemental strand, 34987173 - 34987113
Alignment:
Q  96 aaatgtaattcttaaatccaataagttcagca---attaggatcaaatcataagaagcact 153  Q
    |||||| |||||||||||||||| ||||||||   ||||||||||||||||| ||||||||    
T  34987173 aaatgttattcttaaatccaatatgttcagcagcaattaggatcaaatcatatgaagcact 34987113  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 14782912 - 14782856
Alignment:
Q  17 acatgttgacaccggtaaaaatttgaaaaaatgaataaatctaacgtaaccacatgt 73  Q
    ||||||||| || ||||||||||||||||||||||| |||  ||||||| |||||||    
T  14782912 acatgttgatactggtaaaaatttgaaaaaatgaattaattgaacgtaatcacatgt 14782856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 191 - 250
Target Start/End: Complemental strand, 18268071 - 18268012
Alignment:
Q  191 acatgtcgacacgggtaaaaatttgaaaaaatgaattaattgaacctaaccacatgtgtc 250  Q
    ||||||| |||| | ||| ||||||| |||||||||||||||||| ||| ||||||||||    
T  18268071 acatgtcaacactgataataatttgagaaaatgaattaattgaacgtaatcacatgtgtc 18268012  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 21768603 - 21768658
Alignment:
Q  195 gtcgacacgggtaaaaatttgaaaaaatgaattaattgaacctaaccacatgtgtc 250  Q
    ||||| || ||||| ||||||| ||||||||||| |||||| ||||||||||||||    
T  21768603 gtcgatactggtaataatttgagaaaatgaattatttgaacgtaaccacatgtgtc 21768658  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 264 - 315
Target Start/End: Complemental strand, 34987037 - 34986986
Alignment:
Q  264 gtcggaaatgtcaatcttaaatccaataagttcaacaattaggatcaaatca 315  Q
    ||||||||||| | |||||||||||| ||||||| |||||||||| ||||||    
T  34987037 gtcggaaatgttattcttaaatccaaaaagttcagcaattaggattaaatca 34986986  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000009; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 191 - 251
Target Start/End: Complemental strand, 10764142 - 10764082
Alignment:
Q  191 acatgtcgacacgggtaaaaatttgaaaaaatgaattaattgaacctaaccacatgtgtca 251  Q
    |||||| ||||| |||||||||||||||||||||||||||||||| ||| | |||||||||    
T  10764142 acatgttgacactggtaaaaatttgaaaaaatgaattaattgaacgtaatcgcatgtgtca 10764082  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 10764142 - 10764083
Alignment:
Q  17 acatgttgacaccggtaaaaatttgaaaaaatgaataaatctaacgtaaccacatgtgtc 76  Q
    |||||||||||| ||||||||||||||||||||||| |||  ||||||| | ||||||||    
T  10764142 acatgttgacactggtaaaaatttgaaaaaatgaattaattgaacgtaatcgcatgtgtc 10764083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 4012730 - 4012771
Alignment:
Q  208 aaaatttgaaaaaatgaattaattgaacctaaccacatgtgt 249  Q
    |||||||||||||||||||||||||||  ||| |||||||||    
T  4012730 aaaatttgaaaaaatgaattaattgaatataatcacatgtgt 4012771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 235
Target Start/End: Original strand, 17421949 - 17421986
Alignment:
Q  198 gacacgggtaaaaatttgaaaaaatgaattaattgaac 235  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  17421949 gacaccggttaaaatttgaaaaaatgaattaattgaac 17421986  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 894057 - 894106
Alignment:
Q  199 acacgggtaaaaatttgaaaaaatgaattaattgaacctaaccacatgtg 248  Q
    |||| ||||||||||||||||||| |||||||||||| ||| ||||||||    
T  894057 acactggtaaaaatttgaaaaaattaattaattgaacataatcacatgtg 894106  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 43919786 - 43919858
Alignment:
Q  10 gacacagacatgttgacaccggtaaaaatttgaaaaa-atgaataaatctaacgtaaccacatgtgtcggtgt 81  Q
    ||||||||||||| ||||||| ||||||||||||||| ||||||||||  | |||||  ||||||||| ||||    
T  43919786 gacacagacatgtcgacaccgataaaaatttgaaaaatatgaataaattaagcgtaattacatgtgtcagtgt 43919858  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 234
Target Start/End: Complemental strand, 28173143 - 28173108
Alignment:
Q  199 acacgggtaaaaatttgaaaaaatgaattaattgaa 234  Q
    |||| |||||||||||||||||||||||||||||||    
T  28173143 acacaggtaaaaatttgaaaaaatgaattaattgaa 28173108  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 4796431 - 4796474
Alignment:
Q  208 aaaatttgaaaaaatgaattaattgaacctaaccacatgtgtca 251  Q
    ||||||||||||||| |||||||||||| ||| |||||||||||    
T  4796431 aaaatttgaaaaaataaattaattgaacataatcacatgtgtca 4796474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 3412895 - 3412936
Alignment:
Q  191 acatgtcgacacgggtaaaaatttgaaaaaatgaattaattg 232  Q
    |||||||||||| ||||||||||||||||| | |||||||||    
T  3412895 acatgtcgacaccggtaaaaatttgaaaaagttaattaattg 3412936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 232
Target Start/End: Complemental strand, 3433930 - 3433889
Alignment:
Q  191 acatgtcgacacgggtaaaaatttgaaaaaatgaattaattg 232  Q
    |||||||||||| ||||||||||||||||| | |||||||||    
T  3433930 acatgtcgacaccggtaaaaatttgaaaaagttaattaattg 3433889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 208 - 249
Target Start/End: Original strand, 4795552 - 4795593
Alignment:
Q  208 aaaatttgaaaaaatgaattaattgaacctaaccacatgtgt 249  Q
    ||||||||||||||| |||||||||||| ||| |||||||||    
T  4795552 aaaatttgaaaaaataaattaattgaacataatcacatgtgt 4795593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 206 - 235
Target Start/End: Original strand, 14226999 - 14227028
Alignment:
Q  206 taaaaatttgaaaaaatgaattaattgaac 235  Q
    ||||||||||||||||||||||||||||||    
T  14226999 taaaaatttgaaaaaatgaattaattgaac 14227028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 205 - 234
Target Start/End: Original strand, 24362330 - 24362359
Alignment:
Q  205 gtaaaaatttgaaaaaatgaattaattgaa 234  Q
    ||||||||||||||||||||||||||||||    
T  24362330 gtaaaaatttgaaaaaatgaattaattgaa 24362359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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