View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19678_low_46 (Length: 213)
Name: NF19678_low_46
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19678_low_46 |
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Alignment Details
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 20 - 194
Target Start/End: Original strand, 38875429 - 38875603
Alignment:
| Q |
20 |
aatgtaatcaaatgtgtcggtgtcttgacgatgtatgtcaccaacacatgtcggacacaacttcaatgtgaagaattggtgctacatagtatatcattat |
119 |
Q |
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| T |
38875429 |
aatgtaatcaaatgtgtcggtgtcttgacgatatatgtcaccaacacatgtcggacacaacttcaatgtgaagaattgatgctacatagtatatcattat |
38875528 |
T |
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| Q |
120 |
taaactatataatatttacttatcattcttaaactatgatcatgannnnnnnnnattcacaacaagcaatagtcc |
194 |
Q |
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| T |
38875529 |
taaactatataatatttacttatcattcttaaactatgatcatgatttttttttattcacaacaagcaatagtcc |
38875603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 21 - 164
Target Start/End: Original strand, 38872279 - 38872417
Alignment:
| Q |
21 |
atgtaatcaaatgtgtcggtgtcttgacgatgtatgtcaccaacacatgtcggacacaacttcaatgtgaagaattggtgctacatagtatatcattatt |
120 |
Q |
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|||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||| || ||| |||||||||||||||||| |
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| T |
38872279 |
atgtaatcaaatatgtcg-tgtcttgatgatgtatgtcaccaacacatgtcggacacaacatcaatgtgaagaaatgatgcaacatagtatatcattatt |
38872377 |
T |
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| Q |
121 |
aaactatataatatttacttatcattcttaaactatgatcatga |
164 |
Q |
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| T |
38872378 |
aaactatataatatttactta----tcttaaactatgatcatga |
38872417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 105 - 156
Target Start/End: Original strand, 38869168 - 38869219
Alignment:
| Q |
105 |
atagtatatcattattaaactatataatatttacttatcattcttaaactat |
156 |
Q |
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| T |
38869168 |
atagtctatcatcattaaactatattatatttacttaacattcttaaactat |
38869219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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