View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19678_low_47 (Length: 212)
Name: NF19678_low_47
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19678_low_47 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 6274764 - 6274553
Alignment:
| Q |
1 |
actcaaaataaataattttggtannnnnnngcaaaattgtttcatttttattcaaattattgcaatgactgaattatatannnnnnnaataggctatccg |
100 |
Q |
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| T |
6274764 |
actcgaaataaataattttggtattgttttgcaaaattgtttcatttttattcaaattattgcaatgactgaattatatatttttttaataggctatcca |
6274665 |
T |
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| Q |
101 |
aaccaacaaattgtacatacttgattaccacgactcgttatatccatatctaaggaaaataaatgcagctgatacaaaggcatatgctacgagaaccttc |
200 |
Q |
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| T |
6274664 |
aaccaacaaattgtacatacttgattaccacgactcgttatatccatatctgaggaaaataaatgcagctgatacaaaggcatatgctacgagaaccttc |
6274565 |
T |
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| Q |
201 |
cttttcttacaa |
212 |
Q |
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|||||||||||| |
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| T |
6274564 |
cttttcttacaa |
6274553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 48 - 212
Target Start/End: Complemental strand, 6321595 - 6321429
Alignment:
| Q |
48 |
ttattcaaattattgcaatgactgaattatatannnnnnnaataggctatccgaaccaacaaattgtacatacttgattaccacgactcgttatatccat |
147 |
Q |
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| T |
6321595 |
ttattcaaataattgcaatgactaaattatat-tttgttcaataggctatccaaaacaacaggctttacatacttgatcaccatgactcaatatatccat |
6321497 |
T |
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| Q |
148 |
atctaaggaaaataaatgcagctgat---acaaaggcatatgctacgagaaccttccttttcttacaa |
212 |
Q |
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| T |
6321496 |
atctgaggaaaataaatgcagctgatacaacaaaggcatatgctactagaactatcattttcttacaa |
6321429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 88 - 212
Target Start/End: Complemental strand, 6332061 - 6331937
Alignment:
| Q |
88 |
aataggctatccgaaccaacaaattgtacatacttgattaccacgactcgttatatccatatctaaggaaaataaatgcagctgatacaaaggcatatgc |
187 |
Q |
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| T |
6332061 |
aataggctatccaaaacaacaggctttacatacttgatcaccatgacccaatatttccatatttgaggaaaataaactcaactgatacaaaggcatatgc |
6331962 |
T |
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| Q |
188 |
tacgagaaccttccttttcttacaa |
212 |
Q |
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| T |
6331961 |
tacgagaaccttcattttcttacaa |
6331937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 90 - 208
Target Start/End: Complemental strand, 6424256 - 6424138
Alignment:
| Q |
90 |
taggctatccgaaccaacaaattgtacatacttgattaccacgactcgttatatccatatctaaggaaaataaatgcagctgatacaaaggcatatgcta |
189 |
Q |
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| T |
6424256 |
taggctatccaaaacaacaaattgtacatccttgatcactatgacatagtatatccatatttgaggaaaataaatgcaactgagacaaaggcctatgctg |
6424157 |
T |
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| Q |
190 |
cgagaaccttccttttctt |
208 |
Q |
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| T |
6424156 |
ctagaaccatccttttctt |
6424138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 110 - 208
Target Start/End: Complemental strand, 6352392 - 6352294
Alignment:
| Q |
110 |
attgtacatacttgattaccacgactcgttatatccatatctaaggaaaataaatgcagctgatacaaaggcatatgctacgagaaccttccttttctt |
208 |
Q |
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|||||||||||||||| |||||||| | | | ||||||| | ||||||||||||||| | || |||||||| |||||||| |||||| | |||||||| |
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| T |
6352392 |
attgtacatacttgatcaccacgacccactctttccatatttgaggaaaataaatgcaaccgagacaaaggcctatgctaccagaaccatacttttctt |
6352294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 208
Target Start/End: Complemental strand, 6363333 - 6363233
Alignment:
| Q |
108 |
aaattgtacatacttgattaccacgactcgttatatccatatctaaggaaaataaatgcagctgatacaaaggcatatgctacgagaaccttccttttct |
207 |
Q |
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| T |
6363333 |
aaattgttcatactggatcaccacgacccactctttccatatttgaggaaaataaatgcaaccgagactaaggcctatgctactagaaccattcttttct |
6363234 |
T |
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| Q |
208 |
t |
208 |
Q |
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| T |
6363233 |
t |
6363233 |
T |
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