View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19678_low_5 (Length: 785)
Name: NF19678_low_5
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19678_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 35476134 - 35476598
Alignment:
| Q |
1 |
cgttctcgtgattgaaggattttttacccttcccttaccactcctctctagtacctaccgcagagcaatcaaggtaacacacgtgcacttgttacaaaag |
100 |
Q |
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| T |
35476134 |
cgttctcgtgattgaaggattttttacccttcccttaccactcctctctagtacctaccgcagagcaatcaaggtaacacacgtgcacttgttacaaaag |
35476233 |
T |
|
| Q |
101 |
tttaagatagacatttattaagtccgtaagtgtagctcagttcgtaattattagagccattatgttcaattatgtaggcaagaacgaaggtagcagaggc |
200 |
Q |
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| T |
35476234 |
tttaaggtagacatttattaagtccgtaagtgtagctcagtttgtaactatcagagccattatgttcaattatgtaggcaagaacgaaggtagcagaggc |
35476333 |
T |
|
| Q |
201 |
attgacattgattgtgaggcagagaagaaaagaaagtgtaatgggggagacaaaaactgacatgctaggtgcattgttggcctctggcgaccacttttcc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35476334 |
attgacattgattgtgaggcagagaagaaaagaaagtgtaatgggggagacaaaaactgacatgctaggtgcattgttggcatctggcgaccacttttcc |
35476433 |
T |
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| Q |
301 |
aatgaacaaatagtcgatttcatgttggcattgctcgtcgccggttatgaaaccacctctaccataatgacatttgcggtcaagtttctcaccgaacatc |
400 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35476434 |
aatgaacaaatagtcgatttcatgttggcattactcgtcgccggatatgaaaccacctctaccataatgacattcgcggtcaagtttctcaccgaacatc |
35476533 |
T |
|
| Q |
401 |
ctctagcattggcacaactcaaggtaaatttaagaatttaagaatttcatttataaacatctcaa |
465 |
Q |
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| T |
35476534 |
ctctagcattggcacaactcaaggtaaatttaagaatttaaggatagcatttataaacatctcaa |
35476598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 504 - 769
Target Start/End: Original strand, 35476637 - 35476902
Alignment:
| Q |
504 |
cttgtgccttaaggatacaagttagcatttctaaaagnnnnnnngtatattgttggtgcatattttttggtcaaactaatacatcacatttgttttatag |
603 |
Q |
| |
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| T |
35476637 |
cttgtgccttaaggacacaagttagcatttctaaaagaaataaagtatattgttggtgcatattttttggtcaaactaatacatcacatttgttttgtag |
35476736 |
T |
|
| Q |
604 |
tattatttagctagggtagtggaccatatatagatataggtccatgcttatagaattaccccaccaccgtgtccatgtccatccccatcgttcatgtggt |
703 |
Q |
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| T |
35476737 |
tattatttagctagggtagtggaccatatatagatataggtccatgcttatagaattaccccaccaccgtgtccatgtccatccccatcgttcatgtggt |
35476836 |
T |
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| Q |
704 |
gtggtttcctttcaaacctcattttcgttatctgttcctcaccacttcccccaccctacctatatt |
769 |
Q |
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| T |
35476837 |
gtggtttcctttcaaacctcattttcgttatctgtccctcaccacttcccccaccctacctatatt |
35476902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 175 - 426
Target Start/End: Original strand, 31554017 - 31554271
Alignment:
| Q |
175 |
taggcaagaacgaaggtagcagaggcattgacattgattgtgaggcagagaagaaaagaaagtgtaatgggg---gagacaaaaactgacatgctaggtg |
271 |
Q |
| |
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||||||||||| ||||| ||||||||| ||||| | | ||||||||||| |||||||| | || ||| || |||| ||| | ||||||||| || | |
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| T |
31554017 |
taggcaagaacaaaggtggcagaggcactgacactagtagtgaggcagaggagaaaagagaatgaaataggcatagagaaaaagaatgacatgcttggag |
31554116 |
T |
|
| Q |
272 |
cattgttggcctctggcgaccacttttccaatgaacaaatagtcgatttcatgttggcattgctcgtcgccggttatgaaaccacctctaccataatgac |
371 |
Q |
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|||||||||| ||||| || || || || || || ||||||| ||||| |||||||| |||||||| || ||||||||||| || ||||| || ||||| |
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| T |
31554117 |
cattgttggcatctggtgaacagttctcaaacgaggaaatagttgattttatgttggctttgctcgttgctggttatgaaactacttctacaattatgac |
31554216 |
T |
|
| Q |
372 |
atttgcggtcaagtttctcaccgaacatcctctagcattggcacaactcaaggta |
426 |
Q |
| |
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|||| |||| |||||||| ||| |||| |||| |||||||||||||||||| |
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| T |
31554217 |
tcttgccatcaaatttctcactgaaactcctttagccttggcacaactcaaggta |
31554271 |
T |
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