View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19678_low_6 (Length: 779)

Name: NF19678_low_6
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19678_low_6
NF19678_low_6
[»] chr3 (3 HSPs)
chr3 (13-383)||(39141720-39142092)
chr3 (494-765)||(39141315-39141587)
chr3 (443-483)||(39141612-39141654)


Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-151; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-151
Query Start/End: Original strand, 13 - 383
Target Start/End: Complemental strand, 39142092 - 39141720
Alignment:
Q  13 aatatcaactaattttaactat----aacaatgtttaacaagtttaaagtgtaaataacatttccgacttgaaatgagaaatacaatctaagataaagaa 108  Q
    ||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39142092 aatatcaactaattttaactatcttaaacaatgtttaacaagtttaaagtgtaaataacatttccgacttgaaatgagaaatacaatctaagataaagaa 39141993  T
Q  109 aatataattcaacagaatagtggaaattacaagtatgtaatcacatctcttatnnnnnnnnnnnnnnnnnggttgcattcacattcacatcaactacata 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||||||||||||||||||||||||||    
T  39141992 aatataattcaacagaatagtggaaattacaagtatgtaatcacatctcttat------aaaaaaaaaaaggttgcattcacattcacatcaactacata 39141899  T
Q  209 agaaaaagtcgatgaaaatagtggcggcgatcaaaggtactagactcctaaatatctacaccatacttccaaatcccttgactttcttattgtgaatcta 308  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  39141898 agaaaaagtcgatgaaaatagtggcggcgatcaaaggtacttgactcctaaatatctacaccatacttccaagtcccttgactttcttattgtgactcta 39141799  T
Q  309 caagt-at---acctgtgcgtttcgttcatttactttgaattgcaaatcacctccataccatgataaatattgatttgc 383  Q
    ||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39141798 caagtgatctaacctgtgcgtttcgttcatttactttgaattgcaaatcacctccataccatgataaatattgatttgc 39141720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 494 - 765
Target Start/End: Complemental strand, 39141587 - 39141315
Alignment:
Q  494 cgtgaattttagaatagaattacaaattataaacatcaaacctgaaaaattatatcatataaaacctacgttcaaccnnnnnnn-tactaaattaagaac 592  Q
    |||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||        |||||||||||||||    
T  39141587 cgtgaattttagaatagaattacaaattataaacattaaacctaaaaaattatatcatataaaacctacgttcaaccaaaaaaaatactaaattaagaac 39141488  T
Q  593 tccaactctaaatttgagagaccatcaaaaactaaactaggcgaataaagcttatccatcacaatgttaggatgttctcagacaacgggagcaacgtcag 692  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  39141487 tccaactctaaatttgagagaccatcaaatactaaactaggcgaataaagcttatccatcacaatgttaggatgttctcggacaacgggagcaacgtcag 39141388  T
Q  693 gctaatgatgagaatcatcaagaaattgagatatcatagctctactcaaaattttaaagcatttagtatatga 765  Q
    ||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  39141387 gctaatgatgagaatcatcaagaaattgagacatcatagcactactcaaaattttaaagcatttagtatatga 39141315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 443 - 483
Target Start/End: Complemental strand, 39141654 - 39141612
Alignment:
Q  443 gttcatatataatgcgaatga--taaattttatgttaaacaca 483  Q
    |||||||||||||||||||||  ||||||||||||||||||||    
T  39141654 gttcatatataatgcgaatgaaataaattttatgttaaacaca 39141612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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