View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19678_low_9 (Length: 653)

Name: NF19678_low_9
Description: NF19678
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19678_low_9
NF19678_low_9
[»] chr7 (16 HSPs)
chr7 (448-635)||(25488014-25488199)
chr7 (448-635)||(25475676-25475861)
chr7 (451-635)||(25433169-25433352)
chr7 (241-387)||(41850969-41851116)
chr7 (243-387)||(23319931-23320075)
chr7 (244-322)||(7568199-7568277)
chr7 (45-153)||(25487901-25488016)
chr7 (503-635)||(25640898-25641030)
chr7 (565-635)||(25448204-25448274)
chr7 (241-322)||(48394183-48394262)
chr7 (243-322)||(24989807-24989886)
chr7 (243-322)||(8417752-8417831)
chr7 (243-322)||(18674597-18674676)
chr7 (199-301)||(48390361-48390464)
chr7 (243-387)||(45062549-45062693)
chr7 (244-300)||(965166-965222)
[»] chr1 (19 HSPs)
chr1 (208-387)||(11907936-11908114)
chr1 (244-387)||(27654701-27654842)
chr1 (198-339)||(16129967-16130109)
chr1 (198-339)||(16130517-16130659)
chr1 (243-322)||(36834329-36834406)
chr1 (222-383)||(4813710-4813873)
chr1 (244-322)||(9411823-9411901)
chr1 (212-387)||(23933273-23933450)
chr1 (145-322)||(1553711-1553889)
chr1 (241-387)||(40988023-40988168)
chr1 (244-303)||(27846430-27846489)
chr1 (243-322)||(27332959-27333038)
chr1 (243-322)||(30222786-30222865)
chr1 (243-322)||(13879074-13879153)
chr1 (243-322)||(35050325-35050404)
chr1 (246-322)||(34546746-34546820)
chr1 (244-322)||(5800457-5800535)
chr1 (248-289)||(11625015-11625056)
chr1 (243-340)||(45192575-45192672)
[»] scaffold0057 (2 HSPs)
scaffold0057 (244-387)||(30505-30648)
scaffold0057 (259-414)||(30754-30909)
[»] chr3 (14 HSPs)
chr3 (208-385)||(49794914-49795091)
chr3 (244-387)||(46320529-46320672)
chr3 (198-387)||(22515687-22515879)
chr3 (198-387)||(35612973-35613164)
chr3 (244-322)||(48905654-48905732)
chr3 (198-339)||(50834055-50834197)
chr3 (198-339)||(50841656-50841798)
chr3 (198-322)||(25313412-25313537)
chr3 (244-322)||(23026306-23026384)
chr3 (244-322)||(9663926-9664002)
chr3 (243-303)||(20922813-20922873)
chr3 (243-322)||(25096007-25096086)
chr3 (243-322)||(26848180-26848259)
chr3 (243-322)||(54748084-54748163)
[»] chr2 (20 HSPs)
chr2 (243-387)||(10700179-10700323)
chr2 (243-387)||(25187032-25187176)
chr2 (198-387)||(39778605-39778797)
chr2 (244-387)||(7105648-7105791)
chr2 (243-387)||(10728248-10728392)
chr2 (241-322)||(19926807-19926886)
chr2 (243-322)||(11964244-11964323)
chr2 (258-372)||(16621945-16622057)
chr2 (243-322)||(36191596-36191674)
chr2 (243-387)||(41435564-41435708)
chr2 (244-387)||(42993761-42993904)
chr2 (243-322)||(22066396-22066475)
chr2 (244-322)||(10448813-10448891)
chr2 (244-322)||(28831053-28831131)
chr2 (244-288)||(41462761-41462805)
chr2 (244-387)||(13693485-13693628)
chr2 (243-322)||(21345101-21345178)
chr2 (574-634)||(35042693-35042753)
chr2 (575-635)||(35051888-35051948)
chr2 (574-634)||(35102773-35102833)
[»] chr8 (11 HSPs)
chr8 (199-387)||(17855397-17855586)
chr8 (198-340)||(32305756-32305899)
chr8 (243-303)||(35634830-35634890)
chr8 (244-322)||(8669828-8669906)
chr8 (243-387)||(13882179-13882322)
chr8 (223-387)||(36741650-36741818)
chr8 (244-322)||(37533861-37533939)
chr8 (243-322)||(29226370-29226448)
chr8 (241-322)||(8106985-8107066)
chr8 (243-301)||(42569996-42570054)
chr8 (246-306)||(31598668-31598728)
[»] chr6 (3 HSPs)
chr6 (198-340)||(1365693-1365836)
chr6 (244-387)||(7243371-7243514)
chr6 (243-322)||(24338032-24338111)
[»] chr5 (9 HSPs)
chr5 (244-387)||(24868562-24868705)
chr5 (243-322)||(33314422-33314501)
chr5 (243-339)||(40385238-40385334)
chr5 (504-635)||(496935-497066)
chr5 (243-322)||(21262918-21262997)
chr5 (244-322)||(4237947-4238025)
chr5 (243-300)||(3097593-3097650)
chr5 (243-300)||(41174703-41174760)
chr5 (244-377)||(2934854-2934987)
[»] chr4 (12 HSPs)
chr4 (243-387)||(30537586-30537730)
chr4 (243-340)||(36187413-36187510)
chr4 (243-387)||(43034085-43034229)
chr4 (198-340)||(782841-782984)
chr4 (199-322)||(27627802-27627924)
chr4 (243-322)||(26877257-26877336)
chr4 (243-400)||(56551417-56551570)
chr4 (243-306)||(3067821-3067884)
chr4 (243-322)||(50150337-50150416)
chr4 (244-322)||(25934435-25934513)
chr4 (244-300)||(33313325-33313381)
chr4 (246-291)||(44538464-44538509)
[»] scaffold0067 (1 HSPs)
scaffold0067 (243-322)||(6797-6876)
[»] scaffold0008 (1 HSPs)
scaffold0008 (244-300)||(258358-258414)


Alignment Details
Target: chr7 (Bit Score: 153; Significance: 9e-81; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 153; E-Value: 9e-81
Query Start/End: Original strand, 448 - 635
Target Start/End: Original strand, 25488014 - 25488199
Alignment:
Q  448 tacaacaatactaacatatttgtgcttaatactctctctccacagtatctccccaatttgagaagaatggatttgagcaactcaataaatctgaagatga 547  Q
    |||||||||||||||||||||||| || ||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||    
T  25488014 tacaacaatactaacatatttgtggttgat--tctctctccacagtatctccccaatttgagaaggatggatttgagcaactcaaaaaatctgaagatga 25488111  T
Q  548 ctccatgttttaagggaatcctaaaccttgagcggctagattttacgggatgcataaacttatcgcatgtggatccatcaattggact 635  Q
    ||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  25488112 ctccatgttttgagggaatcctaaaccttgagcggctagattttacaggatgcataaacttatcgcatgtggatccatcaattggact 25488199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 448 - 635
Target Start/End: Complemental strand, 25475861 - 25475676
Alignment:
Q  448 tacaacaatactaacatatttgtgcttaatactctctctccacagtatctccccaatttgagaagaatggatttgagcaactcaataaatctgaagatga 547  Q
    |||||||||| ||||||||| | | || ||  |||||||  |||| ||||||||||||||| ||| |||||| | |||||||| | ||||||||||||||    
T  25475861 tacaacaatagtaacatattggcggttgat--tctctcttgacagcatctccccaatttgaaaaggatggatcttagcaactctaaaaatctgaagatga 25475764  T
Q  548 ctccatgttttaagggaatcctaaaccttgagcggctagattttacgggatgcataaacttatcgcatgtggatccatcaattggact 635  Q
    ||||||||||| | |||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  25475763 ctccatgttttgatggaatcctaaacctggagcggctagatcttacaggatgcataaacttatcgcatgtggatccatcaattggact 25475676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 451 - 635
Target Start/End: Complemental strand, 25433352 - 25433169
Alignment:
Q  451 aacaatactaacatatttgtgcttaatactctctctccacagtatctccccaatttgagaagaatggatttgagcaactcaataaatctgaagatgactc 550  Q
    ||||||||||||||||||||| || || ||| | || ||||| ||||||||||||||| ||| |||||| |||||||||| | |||||||||||||||||    
T  25433352 aacaatactaacatatttgtggttgattctc-cacttcacagcatctccccaatttgaaaaggatggatctgagcaactctaaaaatctgaagatgactc 25433254  T
Q  551 catgttttaagggaatcctaaaccttgagcggctagattttacgggatgcataaacttatcgcatgtggatccatcaattggact 635  Q
    |||||||| ||||| ||||||| |||||||| |||||| || | ||||||||||||||||| || |||||| |||||||||||||    
T  25433253 catgttttgagggagtcctaaatcttgagcgactagatctttcaggatgcataaacttatcacaagtggattcatcaattggact 25433169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 241 - 387
Target Start/End: Complemental strand, 41851116 - 41850969
Alignment:
Q  241 aactaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcat-gga 339  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||| ||||||| || | ||||||||||||| || | || |||||   |    
T  41851116 aactaaatttcatttgtacccttatttattatgagagagaatattaaaagtaagtgagttggtggaataaagagtaattaatttaggggtattcataaaa 41851017  T
Q  340 agaaatttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
    | |||||||||| || ||| |||||||||||| ||||| |||||||||    
T  41851016 aaaaatttaaatgtagaggtgtattaaatgaagataacaattttcaat 41850969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 243 - 387
Target Start/End: Complemental strand, 23320075 - 23319931
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaaga 342  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||| || | ||||||||||||| || | || |||||||||      
T  23320075 ctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagagtaattaatttaggggtattcatggaaat 23319976  T
Q  343 aatttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
      ||||||| || ||| |||||||| ||| ||||| |||||||||    
T  23319975 tttttaaatgtagaggtgtattaaacgaagataactattttcaat 23319931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 244 - 322
Target Start/End: Complemental strand, 7568277 - 7568199
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||||    
T  7568277 taaatttcatttgtgcccttatttattatgaaagagaatattaaaagtaagtaagttggtggaataaagagtaattaat 7568199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 45 - 153
Target Start/End: Original strand, 25487901 - 25488016
Alignment:
Q  45 gtcaacctcgcttatatagttgctcttagttcaatgtgttgattcaccaagtgt--actctccccgcaattttgaaatc-----aaagtgaattaatgaa 137  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||   ||| ||| ||||||||||||||     | ||||||| ||||||    
T  25487901 gtcaacctcgcttatatagttgtttttagttcaatgtgttgattcaccaagtgtggcctccccctgcaattttgaaatcacactagagtgaatgaatgaa 25488000  T
Q  138 attcaagttttaatac 153  Q
    ||||||||||||||||    
T  25488001 attcaagttttaatac 25488016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 503 - 635
Target Start/End: Original strand, 25640898 - 25641030
Alignment:
Q  503 atttgagaagaatggatttgagcaactcaataaatctgaagatgactccatgttttaagggaatcctaaaccttgagcggctagattttacgggatgcat 602  Q
    |||||| ||| ||||||||||||||||| | |||||| |||||||| ||||| ||||| || || | ||| || ||||| ||||||||| | ||||||||    
T  25640898 atttgaaaaggatggatttgagcaactctaaaaatctcaagatgaccccatgctttaaagggatgcaaaatctcgagcgactagattttgctggatgcat 25640997  T
Q  603 aaacttatcgcatgtggatccatcaattggact 635  Q
    || ||||| ||||||| ||||||||||||||||    
T  25640998 aagcttatggcatgtgcatccatcaattggact 25641030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 565 - 635
Target Start/End: Original strand, 25448204 - 25448274
Alignment:
Q  565 atcctaaaccttgagcggctagattttacgggatgcataaacttatcgcatgtggatccatcaattggact 635  Q
    |||||||| ||||||||||||||| |||| |||||||| |||||||| |||||||||||||||||||||||    
T  25448204 atcctaaatcttgagcggctagatcttacaggatgcattaacttatcacatgtggatccatcaattggact 25448274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 241 - 322
Target Start/End: Complemental strand, 48394262 - 48394183
Alignment:
Q  241 aactaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    ||||||||||||||||| |||||||||||||||||  |||||||||||||| ||||||||||| || | |||||||||||||    
T  48394262 aactaaatttcatttgtgcccttatttattatgaa--agaatattaaaagtaagtaagttggtggaataaagagtaattaat 48394183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 243 - 322
Target Start/End: Original strand, 24989807 - 24989886
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    ||||||||||||||| |||||||| ||||||| |||||||||||||||| ||||||||| | || | |||||||||||||    
T  24989807 ctaaatttcatttgtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagagtaattaat 24989886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 243 - 322
Target Start/End: Original strand, 8417752 - 8417831
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    ||||||||||||||| |||||||| ||||||| ||| |||||||||||| ||||||||| | || | |||||||||||||    
T  8417752 ctaaatttcatttgtgcccttattaattatgagagataatattaaaagtaagtaagttgatggaataaagagtaattaat 8417831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 243 - 322
Target Start/End: Original strand, 18674597 - 18674676
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    ||||||||||||||| |||||||||||||| | |||||||||| ||| | ||||||||||| || | |||||||||||||    
T  18674597 ctaaatttcatttgtgcccttatttattataagagagaatattgaaaataagtaagttggtggaataaagagtaattaat 18674676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 199 - 301
Target Start/End: Complemental strand, 48390464 - 48390361
Alignment:
Q  199 tccttcttgtaagaaacatggaacaattttcaagtgtgctggaa-ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaa 297  Q
    ||||| || ||||||| || || ||| |||||||| || | ||| |||||||||||||||  |||||||||||||||  ||||||||||||||| |||||    
T  48390464 tcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgtccttatttattatgagtgagaatattaaaagtaagtaa 48390365  T
Q  298 gttg 301  Q
    ||||    
T  48390364 gttg 48390361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 243 - 387
Target Start/End: Original strand, 45062549 - 45062693
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaaga 342  Q
    ||||||||||| ||| ||||| || ||||||| |||||||||||||||| ||||||||| | || | || |||||||||| || | || ||||| |||      
T  45062549 ctaaatttcatctgtgcccttgttgattatgagagagaatattaaaagtaagtaagttgatggaataaaaagtaattaatttaagggtattcatagaatt 45062648  T
Q  343 aatttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
      ||||||| || | | |||||||||||| || || |||||||||    
T  45062649 tttttaaatgtaaaagtgtattaaatgaagatgactattttcaat 45062693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 965222 - 965166
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagtt 300  Q
    |||||||| |||||   |||||||||||||| | |||||||||||||| ||||||||    
T  965222 taaatttcgtttgtgttcttatttattatgagaaagaatattaaaagtaagtaagtt 965166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 3e-31; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 208 - 387
Target Start/End: Original strand, 11907936 - 11908114
Alignment:
Q  208 taagaaacatggaacaattttcaagtgtgctggaa-ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtaga 306  Q
    |||||||||| ||| |||||| ||||||| || || |||||||||||||||  | ||||||||||||| ||||  |||||||| | | ||||||||| ||    
T  11907936 taagaaacattgaataatttttaagtgtgttgaaaactaaatttcatttgtgtctttatttattatgagagag--tattaaaaataaataagttggtgga 11908033  T
Q  307 ttcaagagtaattaatgtacgagttttcatggaagaaatttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
     ||||||||||||||||||   || |||||||||||||||||||| || || |||||||||||||||||  ||||||||||    
T  11908034 atcaagagtaattaatgtaaaggtattcatggaagaaatttaaatgtacagaagtattaaatgaaaatagtcattttcaat 11908114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 244 - 387
Target Start/End: Original strand, 27654701 - 27654842
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaagaa 343  Q
    |||||||||||||| ||||||||||||||||  ||||||||||||||| ||||||||||| || | ||||||||||||| || | ||||| ||||||       
T  27654701 taaatttcatttgtgcccttatttattatga--gagaatattaaaagtaagtaagttggtggaataaagagtaattaatttaggggttttaatggaattt 27654798  T
Q  344 atttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
      ||||||||| ||| |||||||||||| || || |||||||||    
T  27654799 tcttaaatatagaggtgtattaaatgaagattactattttcaat 27654842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 198 - 339
Target Start/End: Complemental strand, 16130109 - 16129967
Alignment:
Q  198 gtccttcttgtaagaaacatggaacaattttcaagtgtgctggaa-ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagta 296  Q
    |||||| || ||||||| || || ||| |||||||| || | ||| ||||||||||||||| |||||||||||||||| |||||||||||||||| ||||    
T  16130109 gtcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagta 16130010  T
Q  297 agttggtagattcaagagtaattaatgtacgagttttcatgga 339  Q
    ||||||| || | || |||||||||| || | || ||||||||    
T  16130009 agttggtggaataaaaagtaattaatttaggggtattcatgga 16129967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 198 - 339
Target Start/End: Complemental strand, 16130659 - 16130517
Alignment:
Q  198 gtccttcttgtaagaaacatggaacaattttcaagtgtgctggaa-ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagta 296  Q
    |||||| || ||||||| || || ||| |||||||| || | ||| ||||||||||||||| |||||||||||||||| |||||||||||||||| ||||    
T  16130659 gtcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagta 16130560  T
Q  297 agttggtagattcaagagtaattaatgtacgagttttcatgga 339  Q
    ||||||| || | || |||||||||| || | || ||||||||    
T  16130559 agttggtggaataaaaagtaattaatttaagggtattcatgga 16130517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 243 - 322
Target Start/End: Original strand, 36834329 - 36834406
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||| || | |||||||||||||    
T  36834329 ctaaatttcatttgtacccttatttattat--aagagaatattaaaagtaagtaagttggtggaataaagagtaattaat 36834406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 222 - 383
Target Start/End: Complemental strand, 4813873 - 4813710
Alignment:
Q  222 caattttcaagtgtgctggaa-ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaatta 320  Q
    ||||||| ||||||||| ||| ||||||||||||||| |||||||||||||||| |  ||||||||||||| ||||||||||| || | || ||||||||    
T  4813873 caatttttaagtgtgcttgaaactaaatttcatttgtgcccttatttattatgagaaggaatattaaaagtaagtaagttggtggaatgaaaagtaatta 4813774  T
Q  321 atgtacgagttttcatggaaga-aatttaaatatataggagtattaaatgaaaataaccatttt 383  Q
    || ||   || ||||||||| |  ||||||||  | ||| |||||||||||| ||||| |||||    
T  4813773 atttaaaggtattcatggaaaactatttaaatggagaggtgtattaaatgaagataactatttt 4813710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 244 - 322
Target Start/End: Original strand, 9411823 - 9411901
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    ||||||||| |||| |||||||||||||||| |||||||||||||||| ||||||||||| || | |||||||||||||    
T  9411823 taaatttcacttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagagtaattaat 9411901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 212 - 387
Target Start/End: Complemental strand, 23933450 - 23933273
Alignment:
Q  212 aaacatggaacaattttcaagtgtgctggaact-aaatttcatttgtacccttatttattatgaaagagaatattaaaag-tgagtaagttggtagattc 309  Q
    |||||| || |||||||||| |||| | ||| | ||||||||||||| ||||||||||||||   ||||||||||||||  | || ||||||||||| ||    
T  23933450 aaacattgaccaattttcaaatgtgtttgaagttaaatttcatttgtgcccttatttattatatgagagaatattaaaaaataagaaagttggtagaatc 23933351  T
Q  310 aagagtaattaatgtacgagttttcatggaagaaatttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
    ||||||||||||| || | || |||||| || ||| |||||| || |||  ||||||| ||||||||  |||||||||    
T  23933350 aagagtaattaatttaggggtattcatgaaaaaaaattaaatgtagaggtatattaaaagaaaataattattttcaat 23933273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 145 - 322
Target Start/End: Original strand, 1553711 - 1553889
Alignment:
Q  145 ttttaatactcactccggtcctttttaaaagaaacaaaaatagnnnnnnnnnngtccttcttgtaagaaacatggaacaattttcaagtgtgctggaa-c 243  Q
    ||||||||||| |||||||||||||||  ||||||||||  ||          |||||| || ||||||  || || ||| |||||||| || | ||| |    
T  1553711 ttttaatactccctccggtcctttttattagaaacaaaatgagaatttttgtggtcctttttataagaagtattgatcaaatttcaagtatgtttgaagc 1553810  T
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||| ||||||||| | || | |||||||||||||    
T  1553811 taaatttcatttgtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagagtaattaat 1553889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 241 - 387
Target Start/End: Complemental strand, 40988168 - 40988023
Alignment:
Q  241 aactaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaa 340  Q
    ||||||||||||||||| |||||||||||||||  |||||||||||||||| ||||||||||  || | ||||||||||||| || | || ||||| |||    
T  40988168 aactaaatttcatttgtgcccttatttattatg--agagaatattaaaagtaagtaagttggcggaataaagagtaattaatttaggggtattcattgaa 40988071  T
Q  341 -gaaatttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
         ||||||| || ||| |||||||||||| ||||| |||||||||    
T  40988070 ttttttttaaatgtagaggtgtattaaatgaagataactattttcaat 40988023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 244 - 303
Target Start/End: Original strand, 27846430 - 27846489
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggt 303  Q
    ||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||    
T  27846430 taaatttcatttgtacccttatttattatgagagataatattaaaagtaagtaagttggt 27846489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 243 - 322
Target Start/End: Complemental strand, 27333038 - 27332959
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    |||||||||||||||||||||||| ||||||| ||| |||||||||||| ||||||||  | || | |||||||||||||    
T  27333038 ctaaatttcatttgtacccttattgattatgagagaaaatattaaaagtaagtaagttaatggaataaagagtaattaat 27332959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 243 - 322
Target Start/End: Original strand, 30222786 - 30222865
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    ||||| |||||||||   |||||| |||||||||||||||||||||||| ||||||||| | |||| |||||||||||||    
T  30222786 ctaaaattcatttgtgttcttattgattatgaaagagaatattaaaagtaagtaagttgatggattaaagagtaattaat 30222865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 243 - 322
Target Start/End: Complemental strand, 13879153 - 13879074
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    ||||||||||||||| |||||||||||||||| | |||||||||| ||| | ||||||||| ||   |||||||||||||    
T  13879153 ctaaatttcatttgtgcccttatttattatgagatagaatattaatagtaaataagttggtggaagaaagagtaattaat 13879074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 243 - 322
Target Start/End: Complemental strand, 35050404 - 35050325
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    |||||||||||||||  ||||||| ||||||| |||||||||||||||| ||||||||| |  | | |||||||||||||    
T  35050404 ctaaatttcatttgtgtccttattgattatgagagagaatattaaaagtaagtaagttgatgaaataaagagtaattaat 35050325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 34546746 - 34546820
Alignment:
Q  246 aatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    |||||||||| | ||||||||||||||||  || |||||||||||| ||||||||||| || | |||||||||||||    
T  34546746 aatttcatttctgcccttatttattatga--gaaaatattaaaagtaagtaagttggtggaataaagagtaattaat 34546820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 322
Target Start/End: Complemental strand, 5800535 - 5800457
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    ||||||||||||||  ||||||||||||||| |||||| ||||||||| | |||||| || || | ||||| |||||||    
T  5800535 taaatttcatttgtgtccttatttattatgagagagaaaattaaaagtaaataagttagtggaataaagagaaattaat 5800457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 248 - 289
Target Start/End: Complemental strand, 11625056 - 11625015
Alignment:
Q  248 tttcatttgtacccttatttattatgaaagagaatattaaaa 289  Q
    |||||||| |||||||||||||||||||||| ||||||||||    
T  11625056 tttcatttatacccttatttattatgaaagaaaatattaaaa 11625015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 340
Target Start/End: Complemental strand, 45192672 - 45192575
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaa 340  Q
    ||||| |||||||||   |||||| ||||||| | |||||||||||| | ||||||||| | || | ||||||||||||| || | || |||||||||    
T  45192672 ctaaaattcatttgtgttcttattaattatgagacagaatattaaaaataagtaagttgatggaataaagagtaattaatttaagggtattcatggaa 45192575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 244 - 387
Target Start/End: Original strand, 30505 - 30648
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaagaa 343  Q
    |||||||||||||| |||||||||||||||| ||| |||||||||||| ||||||||||  || ||||||||||||||| || | || || |||||| ||    
T  30505 taaatttcatttgtgcccttatttattatgagagacaatattaaaagtaagtaagttggcggaatcaagagtaattaatttaggggtatttatggaaaaa 30604  T
Q  344 atttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
    ||||||||  | ||| ||||||||| |||||||| |||||||||    
T  30605 atttaaatgcagaggtgtattaaattaaaataactattttcaat 30648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 414
Target Start/End: Complemental strand, 30909 - 30754
Alignment:
Q  259 cccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacg-----agttttcatggaagaaatttaaatat 353  Q
    |||||||||||||||| |||||||||||||    |||| |||||| || ||||||||||||||| || |      || ||||||||| |||||||||| |    
T  30909 cccttatttattatgagagagaatattaaa----agtatgttggtggaatcaagagtaattaatttaggggtattgtattcatggaaaaaatttaaatgt 30814  T
Q  354 ataggagtattaaatgaaaataaccattttcaatttggtgccttggttttgacaatttatg 414  Q
      |||  |||| |||||||||||| |||||||||||  | ||||||| ||||  |||||||    
T  30813 tgaggtatatt-aatgaaaataactattttcaatttatttccttggtcttgatgatttatg 30754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 8e-29; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 208 - 385
Target Start/End: Complemental strand, 49795091 - 49794914
Alignment:
Q  208 taagaaacatggaacaattttcaagtgtgctggaactaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagat 307  Q
    ||||||| || || ||| |||||||| || || | ||||||||||||||||| |||||||||||||| ||| |||||||||||| ||||||||||| ||     
T  49795091 taagaaatattgatcaagtttcaagtatgttgaagctaaatttcatttgtactcttatttattatgagagaaaatattaaaagtaagtaagttggtggaa 49794992  T
Q  308 tcaagagtaattaatgtacgagttttcatggaagaaatttaaatatataggagtattaaatgaaaataaccattttca 385  Q
    | |||||||||||||  | | || |||||| || ||| |||||| || ||| |||||||||||| ||||| |||||||    
T  49794991 taaagagtaattaattaaggggtattcatgaaaaaaaattaaatgtagaggtgtattaaatgaagataactattttca 49794914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 244 - 387
Target Start/End: Original strand, 46320529 - 46320672
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaagaa 343  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||  | | ||||||||||||| || | || || |||||||      
T  46320529 taaatttcatttgtacccttatttattatgagagagaatattaaaagtaagtaagttggtgaaataaagagtaattaatttaggggtgttaatggaagtt 46320628  T
Q  344 atttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
      ||||||||| ||| |||||||||||| || || |||||||||    
T  46320629 tcttaaatatagaggtgtattaaatgaatattactattttcaat 46320672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 198 - 387
Target Start/End: Original strand, 22515687 - 22515879
Alignment:
Q  198 gtccttcttgtaagaaacatggaacaattttcaagtgtg-ctggaactaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagta 296  Q
    |||||| || ||||||| || || ||| |||||||| || ||| | ||||||||||||||| |||||||||||||||| |||||||||||||||| ||||    
T  22515687 gtcctttttataagaaatattgaccaagtttcaagtatgtctgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagta 22515786  T
Q  297 agttggtagattcaagagtaattaatgtacgagttttcatggaagaaatttaaatatat--aggagtattaaatgaaaataaccattttcaat 387  Q
    ||||||| || | ||||||||||||| || || | || ||||||    ||||||| |||  ||| |||||||||||| ||||| |||||||||    
T  22515787 agttggtggaataaagagtaattaatttaagaatatttatggaatttttttaaatgtattgaggtgtattaaatgaagataactattttcaat 22515879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 198 - 387
Target Start/End: Complemental strand, 35613164 - 35612973
Alignment:
Q  198 gtccttcttgtaagaaacatggaacaattttcaagtgtgctggaa-ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagta 296  Q
    |||||| || ||||||| || || ||| |||||||| || | ||| ||||||||||||||| |||||||||||||||| |||||||||||||||| | ||    
T  35613164 gtcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaaata 35613065  T
Q  297 agttggtagattcaagagtaattaatgtacgagttttcatggaa-gaaatttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
    ||||||| || | ||||||||||||| || | || |||||||||     ||||||| || ||| |||||||||||| ||||| |||||||||    
T  35613064 agttggtggaataaagagtaattaatttaggggtattcatggaattttttttaaatgtagaggtgtattaaatgaagataactattttcaat 35612973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 244 - 322
Target Start/End: Complemental strand, 48905732 - 48905654
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||| || | |||||||||||||    
T  48905732 taaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagagtaattaat 48905654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 198 - 339
Target Start/End: Original strand, 50834055 - 50834197
Alignment:
Q  198 gtccttcttgtaagaaacatggaacaattttcaagtgtgctggaa-ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagta 296  Q
    |||||| || ||||||| || || ||| |||||||| || | ||| ||||||||||||||| |||||| ||||||||| |||||||||||||||| ||||    
T  50834055 gtcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttacttattatgagagagaatattaaaagtaagta 50834154  T
Q  297 agttggtagattcaagagtaattaatgtacgagttttcatgga 339  Q
    ||||||| || | ||||||||||||| || | || ||||||||    
T  50834155 agttggtggaataaagagtaattaatttaagggtattcatgga 50834197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 198 - 339
Target Start/End: Complemental strand, 50841798 - 50841656
Alignment:
Q  198 gtccttcttgtaagaaacatggaacaattttcaagtgtgctggaa-ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagta 296  Q
    |||||| || ||||||| || || ||| |||||||| || | ||| ||||||||||||||| |||||| ||||||||| |||||||||||||||| ||||    
T  50841798 gtcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttacttattatgagagagaatattaaaagtaagta 50841699  T
Q  297 agttggtagattcaagagtaattaatgtacgagttttcatgga 339  Q
    ||||||| || | ||||||||||||| || | || ||||||||    
T  50841698 agttggtggaataaagagtaattaatttaagggtattcatgga 50841656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 198 - 322
Target Start/End: Original strand, 25313412 - 25313537
Alignment:
Q  198 gtccttcttgtaagaaacatggaacaattttcaagtgtgctggaa-ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagta 296  Q
    |||||| || ||||||| || || ||| |||||||| || | ||| ||||||||||||||| |||||||||||||||| |||||||||||||||| ||||    
T  25313412 gtcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagta 25313511  T
Q  297 agttggtagattcaagagtaattaat 322  Q
    ||||||| || | |||| ||||||||    
T  25313512 agttggtggaataaagaataattaat 25313537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 244 - 322
Target Start/End: Complemental strand, 23026384 - 23026306
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||| ||||||||||| || | |||||||||||||    
T  23026384 taaatttcatttgtgcccttattgattatgagagagaatattaaaagtaagtaagttggtggaataaagagtaattaat 23026306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 244 - 322
Target Start/End: Complemental strand, 9664002 - 9663926
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    |||||||||||||| ||||||||||||||||  ||||||||||||||| ||||||||||| || | |||||||||||||    
T  9664002 taaatttcatttgtgcccttatttattatga--gagaatattaaaagtaagtaagttggtggaataaagagtaattaat 9663926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 243 - 303
Target Start/End: Complemental strand, 20922873 - 20922813
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggt 303  Q
    ||||||||||||||| | |||||||||||||| |||||||||||||||| |||||||||||    
T  20922873 ctaaatttcatttgtgctcttatttattatgagagagaatattaaaagtaagtaagttggt 20922813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 243 - 322
Target Start/End: Complemental strand, 25096086 - 25096007
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    ||||||||||||||| |||||||| ||||||| |||||||||||||||| ||||| ||| | || | |||||||||||||    
T  25096086 ctaaatttcatttgtgcccttattgattatgagagagaatattaaaagtaagtaaattgatggaataaagagtaattaat 25096007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 243 - 322
Target Start/End: Complemental strand, 26848259 - 26848180
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    ||||||||| ||||| |||||||| ||||||| |||||||||||||||| ||||||||| | || | |||||||||||||    
T  26848259 ctaaatttcttttgtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagagtaattaat 26848180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 243 - 322
Target Start/End: Original strand, 54748084 - 54748163
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    ||||||||||||||| |||||||| ||||||| |||||||||||||||| ||||| ||| | || | |||||||||||||    
T  54748084 ctaaatttcatttgtgcccttattgattatgagagagaatattaaaagtaagtaaattgatggaataaagagtaattaat 54748163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 243 - 387
Target Start/End: Complemental strand, 10700323 - 10700179
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaaga 342  Q
    ||||||||||||||| |||||| ||||||||| |||||||||||||||| | ||||||||| || | ||||||||||||| || | || |||||||||      
T  10700323 ctaaatttcatttgtgcccttacttattatgagagagaatattaaaagtaaataagttggtggaataaagagtaattaatttaggggtattcatggaatt 10700224  T
Q  343 aatttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
      ||||||| || ||| |||||||||||||||||| |||||||||    
T  10700223 tttttaaatgtagaggtgtattaaatgaaaataactattttcaat 10700179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 243 - 387
Target Start/End: Original strand, 25187032 - 25187176
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaaga 342  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||| || | ||||||||||||| || |  | |||||||||      
T  25187032 ctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaattaagagtaattaatttaaggatattcatggaatt 25187131  T
Q  343 aatttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
      ||||||| || ||| |||||||||||| ||||| |||||||||    
T  25187132 tttttaaatgtagaggtgtattaaatgaagataactattttcaat 25187176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 198 - 387
Target Start/End: Complemental strand, 39778797 - 39778605
Alignment:
Q  198 gtccttcttgtaagaaacatggaacaattttcaagtgtgctggaa-ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagta 296  Q
    |||||| || ||||||| || || ||| |||||||| || | ||| ||||||||||||||| |||||||||||||||| |||||||||||||||| ||||    
T  39778797 gtcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagta 39778698  T
Q  297 agttggtagattcaagagtaattaatgtacgagttttcatggaa--gaaatttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
    ||||||| || | ||||||||||||| || | || |||||||||      ||||||| || ||| |||||||||||| ||||| |||||||||    
T  39778697 agttggtggaataaagagtaattaatttaagggtattcatggaatttttttttaaatgtagaggtgtattaaatgaagataactattttcaat 39778605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 244 - 387
Target Start/End: Original strand, 7105648 - 7105791
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaagaa 343  Q
    |||||||||||||| |||||||||||||||| ||| |||||||||||| ||||||||||| || | ||||||||||||| || | || |||||| || ||    
T  7105648 taaatttcatttgtgcccttatttattatgagagaaaatattaaaagtaagtaagttggtggaataaagagtaattaatttaggggtattcatgaaaaaa 7105747  T
Q  344 atttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
    |||||||| || |   |||||||||||| || || |||||||||    
T  7105748 atttaaatgtagaaatgtattaaatgaagatgactattttcaat 7105791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 243 - 387
Target Start/End: Complemental strand, 10728392 - 10728248
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaaga 342  Q
    ||||||||||||| | |||||||||||||||| |||||||||||||||| ||||||||||| || | ||||||||||||| || | || |||||| |       
T  10728392 ctaaatttcatttatgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagagtaattaatttaggggtattcatgaattt 10728293  T
Q  343 aatttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
      ||||||| || ||| ||||||| |||| ||||| |||||||||    
T  10728292 tttttaaatgtagaggtgtattaactgaagataactattttcaat 10728248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 241 - 322
Target Start/End: Complemental strand, 19926886 - 19926807
Alignment:
Q  241 aactaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    ||||||||||||||||| ||||||||||||||||  ||||||||||||||| ||||||||||| || | |||||||||||||    
T  19926886 aactaaatttcatttgtgcccttatttattatga--gagaatattaaaagtaagtaagttggtggaataaagagtaattaat 19926807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 243 - 322
Target Start/End: Original strand, 11964244 - 11964323
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    ||||||||||||||| |||||||| ||||||| |||||||||||||||| ||||||||| | || | |||||||||||||    
T  11964244 ctaaatttcatttgtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagagtaattaat 11964323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 258 - 372
Target Start/End: Complemental strand, 16622057 - 16621945
Alignment:
Q  258 acccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaagaaatttaaatatatag 357  Q
    |||||||||||||||||  ||||||||||||| | ||||||||||||||   ||||||||||||| || | |  ||||||||| |||||||||| ||| |    
T  16622057 acccttatttattatga--gagaatattaaaaataagtaagttggtagaaataagagtaattaatataggggcattcatggaacaaatttaaatttattg 16621960  T
Q  358 gagtattaaatgaaa 372  Q
    | |||||||||||||    
T  16621959 gtgtattaaatgaaa 16621945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 243 - 322
Target Start/End: Complemental strand, 36191674 - 36191596
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||| || || | |||||||||||||    
T  36191674 ctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagtt-gtggaataaagagtaattaat 36191596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 243 - 387
Target Start/End: Complemental strand, 41435708 - 41435564
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaaga 342  Q
    ||||||||||||||| |||||||| ||||||| | |||||||||||||| | ||||||| |  | | ||||||||||||| || | || |||||| || |    
T  41435708 ctaaatttcatttgtgcccttattgattatgagatagaatattaaaagtaaataagttgatgaaataaagagtaattaatttaagggtattcatgaaaaa 41435609  T
Q  343 aatttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
    || |||||| || | | |||||||||||| || || |||||||||    
T  41435608 aaattaaatgtagaagtgtattaaatgaagatgactattttcaat 41435564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 244 - 387
Target Start/End: Complemental strand, 42993904 - 42993761
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaagaa 343  Q
    |||||||||||||| ||||||||| |||||| |||||| ||||||||| | |||||| || || | ||||| ||||||| || | || ||||||||        
T  42993904 taaatttcatttgtgcccttatttgttatgagagagaaaattaaaagtaaataagttagtggaataaagaggaattaatttaggggtattcatggatttt 42993805  T
Q  344 atttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
    ||||||||||| | | |||||||||||| || || |||||||||    
T  42993804 atttaaatatagaagtgtattaaatgaagatgactattttcaat 42993761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 243 - 322
Target Start/End: Complemental strand, 22066475 - 22066396
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    ||||||||||||||| |||||||| ||||||| |||||||||||||||| ||| ||||| | || | || ||||||||||    
T  22066475 ctaaatttcatttgtgcccttattgattatgagagagaatattaaaagtaagttagttgatggaataaaaagtaattaat 22066396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 244 - 322
Target Start/End: Original strand, 10448813 - 10448891
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    |||||||||||||| | |||||| ||||||| |||||||||||||||| ||||||||| | || | || ||||||||||    
T  10448813 taaatttcatttgtgctcttattgattatgagagagaatattaaaagtaagtaagttgatggaataaatagtaattaat 10448891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 244 - 322
Target Start/End: Original strand, 28831053 - 28831131
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    ||||||||||||||  ||||||||||||||| ||| |||||||||||| ||||| |||||  | | |||||||||||||    
T  28831053 taaatttcatttgtgtccttatttattatgagagaaaatattaaaagtaagtaaattggtgcaataaagagtaattaat 28831131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 41462761 - 41462805
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaa 288  Q
    |||||||||||||| |||||||||||||||| |||||||| ||||    
T  41462761 taaatttcatttgtgcccttatttattatgagagagaataataaa 41462805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 387
Target Start/End: Complemental strand, 13693628 - 13693485
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaagaa 343  Q
    |||||||||||| |  ||||||||||||||| |||||| ||||||||| | |||||| || || | ||||| ||||||| || | || |||||| |        
T  13693628 taaatttcatttctgtccttatttattatgagagagaaaattaaaagtaaataagttagtggaataaagaggaattaatttaggggtattcatgaatatt 13693529  T
Q  344 atttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
     |||||||||| | | |||||||||||| || || |||||||||    
T  13693528 ttttaaatatagaagtgtattaaatgaagatgactattttcaat 13693485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 243 - 322
Target Start/End: Complemental strand, 21345178 - 21345101
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    |||||||||||||||  ||||||| ||| ||| |||||||  ||||||| ||||||||| | || | |||||||||||||    
T  21345178 ctaaatttcatttgtgtccttattgattgtgagagagaat--taaaagtaagtaagttgatggaataaagagtaattaat 21345101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 574 - 634
Target Start/End: Complemental strand, 35042753 - 35042693
Alignment:
Q  574 cttgagcggctagattttacgggatgcataaacttatcgcatgtggatccatcaattggac 634  Q
    |||||||| ||||||||||||||||||| |||||||   |||||  || ||||||||||||    
T  35042753 cttgagcgactagattttacgggatgcacaaacttaatacatgtccattcatcaattggac 35042693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 575 - 635
Target Start/End: Complemental strand, 35051948 - 35051888
Alignment:
Q  575 ttgagcggctagattttacgggatgcataaacttatcgcatgtggatccatcaattggact 635  Q
    ||||| ||||||||||||| |||||||||||| | ||| ||||  ||||||| ||||||||    
T  35051948 ttgagaggctagattttacaggatgcataaacctgtcgtatgtccatccatccattggact 35051888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 574 - 634
Target Start/End: Complemental strand, 35102833 - 35102773
Alignment:
Q  574 cttgagcggctagattttacgggatgcataaacttatcgcatgtggatccatcaattggac 634  Q
    |||||||||||||||||||| ||||||| |||||||   || ||  |||||||||||||||    
T  35102833 cttgagcggctagattttaccggatgcacaaacttaatacaggttcatccatcaattggac 35102773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 2e-26; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 199 - 387
Target Start/End: Original strand, 17855397 - 17855586
Alignment:
Q  199 tccttcttgtaagaaacatggaacaattttcaagtgtgctggaa-ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaa 297  Q
    ||||| || ||||||| || |||||||||| ||||||| ||||| |||||||||||||||| |||||||||| |||| | | | |||||||||| | |||    
T  17855397 tcctttttataagaaatattgaacaatttttaagtgtgttggaaactaaatttcatttgtatccttatttatgatgagaaatagtattaaaagtaattaa 17855496  T
Q  298 gttggtagattcaagagtaattaatgtacgagttttcatggaagaaatttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
    |||  | ||  ||| |||||||||| || | || ||| |||||||||| ||||| |||||||||||||||||| ||||  ||||||||||    
T  17855497 gttaatggaggcaatagtaattaatttaggggtattcttggaagaaatgtaaatgtataggagtattaaatgagaatagtcattttcaat 17855586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 198 - 340
Target Start/End: Original strand, 32305756 - 32305899
Alignment:
Q  198 gtccttcttgtaagaaacatggaacaattttcaagtgtgctggaa-ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagta 296  Q
    |||||| || ||||||| || || ||| |||||||| || | ||| ||||||||||||||| |||||||||||||||| |||||||||||||||| ||||    
T  32305756 gtcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagta 32305855  T
Q  297 agttggtagattcaagagtaattaatgtacgagttttcatggaa 340  Q
    ||||||| || | |||| |||||||| || | || |||||||||    
T  32305856 agttggtggaataaagaataattaatttaggggtattcatggaa 32305899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 243 - 303
Target Start/End: Complemental strand, 35634890 - 35634830
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggt 303  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||| |||||||||||    
T  35634890 ctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggt 35634830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 244 - 322
Target Start/End: Original strand, 8669828 - 8669906
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    |||||||||||||| |||||||| ||||||| |||||||||||||||| ||||||||| | || | |||||||||||||    
T  8669828 taaatttcatttgtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagagtaattaat 8669906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 243 - 387
Target Start/End: Original strand, 13882179 - 13882322
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaaga 342  Q
    ||||||||||||||| |||||||| ||||||| |||||||||| ||||| ||||||||| | || | ||||||||||||| || | || ||||| |||      
T  13882179 ctaaatttcatttgtgcccttattgattatgagagagaatatt-aaagtaagtaagttgatggaataaagagtaattaatttaagggtattcatagaatt 13882277  T
Q  343 aatttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
    | ||||||| || | | |||||||||||| || || |||||||||    
T  13882278 attttaaatgtagaagtgtattaaatgaagatgactattttcaat 13882322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 223 - 387
Target Start/End: Complemental strand, 36741818 - 36741650
Alignment:
Q  223 aattttcaagtgtgctggaa-ctaaatttcatttgtacccttatttattatgaa---agagaatattaaaagtgagtaagttggtagattcaagagtaat 318  Q
    ||||||||| |||| | ||| |||||||||||||||  ||||||||||||| |    |||||||||||||||| |||||||| || || | |||||||||    
T  36741818 aattttcaaatgtgttagaagctaaatttcatttgtgtccttatttattattattagagagaatattaaaagtaagtaagttagtggaattaagagtaat 36741719  T
Q  319 taatgtacgagttttcatggaagaaatttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
    |||| ||    | | ||   || |||||||||| |||||||||||||||||||||||||  ||||||||    
T  36741718 taatatagtgatatccaaaaaataaatttaaatttataggagtattaaatgaaaataactgttttcaat 36741650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 244 - 322
Target Start/End: Original strand, 37533861 - 37533939
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    |||||||| ||||| |||||||| ||||||| |||||||||||||| | ||||||||| | || | |||||||||||||    
T  37533861 taaatttcgtttgtgcccttattgattatgagagagaatattaaaaataagtaagttgatggaataaagagtaattaat 37533939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 243 - 322
Target Start/End: Original strand, 29226370 - 29226448
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    ||||||||||||||| || ||||| |||||||| || |||||||||||| ||||||||| | || | |||||||||||||    
T  29226370 ctaaatttcatttgtgcc-ttattgattatgaatgaaaatattaaaagtaagtaagttgatggaataaagagtaattaat 29226448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 241 - 322
Target Start/End: Original strand, 8106985 - 8107066
Alignment:
Q  241 aactaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    |||||||||||||||||  ||||||||||||||| | |||| ||||||||| | |||||| || || | ||||| |||||||    
T  8106985 aactaaatttcatttgtgtccttatttattatgagatagaaaattaaaagtaaataagttagtggaataaagaggaattaat 8107066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 243 - 301
Target Start/End: Original strand, 42569996 - 42570054
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttg 301  Q
    |||||||| |||||| |  ||||||||||||| |||||||||||||| | |||||||||    
T  42569996 ctaaattttatttgtgcatttatttattatgagagagaatattaaaaataagtaagttg 42570054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 246 - 306
Target Start/End: Original strand, 31598668 - 31598728
Alignment:
Q  246 aatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtaga 306  Q
    ||||| ||||||||  ||| ||||||||| |||||||||||||||| | |||||| |||||    
T  31598668 aattttatttgtacaattaattattatgagagagaatattaaaagtaattaagttagtaga 31598728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 3e-25; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 198 - 340
Target Start/End: Original strand, 1365693 - 1365836
Alignment:
Q  198 gtccttcttgtaagaaacatggaacaattttcaagtgtgctggaa-ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagta 296  Q
    |||||| || ||||||| || || ||| |||||||| || | ||| ||||||||||||||| |||||||||||||||| |||||||||||||||| ||||    
T  1365693 gtcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagta 1365792  T
Q  297 agttggtagattcaagagtaattaatgtacgagttttcatggaa 340  Q
    ||||||| || | ||||||||||||| || | || |||||||||    
T  1365793 agttggtggaataaagagtaattaatttaagggtattcatggaa 1365836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 244 - 387
Target Start/End: Complemental strand, 7243514 - 7243371
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaagaa 343  Q
    |||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||| || | |||| |||||||| || | || ||||||||        
T  7243514 taaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagaataattaatttaggggtattcatggatttt 7243415  T
Q  344 atttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
     ||||||| || ||| |||||||||||| ||||| |||||||||    
T  7243414 ttttaaatgtagaggtgtattaaatgaagataactattttcaat 7243371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 243 - 322
Target Start/End: Complemental strand, 24338111 - 24338032
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||| || | |||||||||||||    
T  24338111 ctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagagtaattaat 24338032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 60; Significance: 3e-25; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 244 - 387
Target Start/End: Original strand, 24868562 - 24868705
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaagaa 343  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| || | ||||||||||||| || | || || ||||||       
T  24868562 taaatttcatttgtacccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagagtaattaatttaggggtgttaatggaattt 24868661  T
Q  344 atttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
      |||| |||| ||| |||||||||||| || || |||||||||    
T  24868662 tcttaattatagaggtgtattaaatgaagattactattttcaat 24868705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 243 - 322
Target Start/End: Original strand, 33314422 - 33314501
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    ||||||||||||||| |||| ||||||||||| |||||||||||||||| || |||||||| || | |||||||||||||    
T  33314422 ctaaatttcatttgtgccctcatttattatgagagagaatattaaaagtaagcaagttggtggaataaagagtaattaat 33314501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 243 - 339
Target Start/End: Complemental strand, 40385334 - 40385238
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatgga 339  Q
    ||||||||||||||| |||||||||||||||| |||||| ||||||||| | |||||| || || | ||||| ||||||| || | || ||||||||    
T  40385334 ctaaatttcatttgtgcccttatttattatgagagagaaaattaaaagtaaataagttagtggaataaagaggaattaatttaggggtattcatgga 40385238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 504 - 635
Target Start/End: Complemental strand, 497066 - 496935
Alignment:
Q  504 tttgagaagaatggatttgagcaactcaataaatctgaagatgactccatgttttaagggaatcctaaaccttgagcggctagattttacgggatgcata 603  Q
    ||||| ||| |||||  |||||||||| | |||||| | ||  |||||| ||||| | || |||| ||| ||||||||| |||||||||| |||||||||    
T  497066 tttgaaaaggatggacctgagcaactcgaaaaatctcaggacaactccaagttttgaagggatccaaaatcttgagcggatagattttacaggatgcata 496967  T
Q  604 aacttatcgcatgtggatccatcaattggact 635  Q
    ||||| | ||| ||| |||||||| |||||||    
T  496966 aacttgttgcaggtgcatccatcagttggact 496935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 243 - 322
Target Start/End: Complemental strand, 21262997 - 21262918
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    ||||||||||||||  ||| |||| ||||||| |||||||||||||||| ||||||||| | || | |||||||||||||    
T  21262997 ctaaatttcatttgcgcccatattgattatgagagagaatattaaaagtaagtaagttgatggaataaagagtaattaat 21262918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 322
Target Start/End: Original strand, 4237947 - 4238025
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    |||||||||||||| || ||||||||||||| | |||||| |||||   ||||| ||||| || |||||||||||||||    
T  4237947 taaatttcatttgtgccgttatttattatgagatagaataataaaatgaagtaaattggtggaatcaagagtaattaat 4238025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 3097650 - 3097593
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagtt 300  Q
    ||||||||||||||| |||||||||||||||| || ||| ||||||||| | ||||||    
T  3097650 ctaaatttcatttgtgcccttatttattatgagagtgaaaattaaaagtaaataagtt 3097593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 243 - 300
Target Start/End: Complemental strand, 41174760 - 41174703
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagtt 300  Q
    ||||||||||||||| |||||||||||||||| ||||||  |||||||| | ||||||    
T  41174760 ctaaatttcatttgtgcccttatttattatgagagagaaagttaaaagtaaataagtt 41174703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 244 - 377
Target Start/End: Complemental strand, 2934987 - 2934854
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatatt-aaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaaga 342  Q
    |||||||||||| |||||||||||||||||| ||||  |||| |||||| | ||| |||   || |||| |||||||||| || |||| || || ||| |    
T  2934987 taaatttcatttatacccttatttattatgagagaggttattaaaaagtaaataaattgccggaatcaaaagtaattaatttaggagtatttat-gaaaa 2934889  T
Q  343 aatttaaatatataggagtattaaatgaaaataac 377  Q
    ||||||||| || ||  |||||||||||| |||||    
T  2934888 aatttaaatgtagagatgtattaaatgaatataac 2934854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 243 - 387
Target Start/End: Complemental strand, 30537730 - 30537586
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaaga 342  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||| || | ||||||||||||| || | || |||||| || |    
T  30537730 ctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagagtaattaatttaggggtattcatgaaaaa 30537631  T
Q  343 aatttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
      ||||||| || |   |||||||||||| || || |||||||||    
T  30537630 tttttaaatgtagaaatgtattaaatgaagatgactattttcaat 30537586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 243 - 340
Target Start/End: Original strand, 36187413 - 36187510
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaa 340  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||| || | |||| |||||||| || | || |||||||||    
T  36187413 ctaaatttcatttgtgcccttatttattatgagagagaatattaaaagtaagtaagttggtggaataaagaataattaatttaggggtattcatggaa 36187510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 243 - 387
Target Start/End: Complemental strand, 43034229 - 43034085
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaaga 342  Q
    ||||||||||||||| |||||||| ||||||| |||||||||||||||| ||||||||| | || | ||||||||||||| || | || ||||| |||      
T  43034229 ctaaatttcatttgtgcccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaagagtaattaatttaagggtattcatagaatt 43034130  T
Q  343 aatttaaatatataggagtattaaatgaaaataaccattttcaat 387  Q
    | ||||||| || | | |||||||||||| || || |||||||||    
T  43034129 attttaaatgtagaagtgtattaaatgaagatgactattttcaat 43034085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 198 - 340
Target Start/End: Original strand, 782841 - 782984
Alignment:
Q  198 gtccttcttgtaagaaacatggaacaattttcaagtgtgctggaa-ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagta 296  Q
    |||||| || ||||||| || || ||| |||||||| || | ||| ||||||||| ||||| |||||||||||||||| |||||||||||||||| ||||    
T  782841 gtcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcttttgtgcccttatttattatgagagagaatattaaaagtaagta 782940  T
Q  297 agttggtagattcaagagtaattaatgtacgagttttcatggaa 340  Q
    ||||||| || | |||| |||||||| || | || |||||||||    
T  782941 agttggtggaataaagaataattaatttaggggtattcatggaa 782984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 199 - 322
Target Start/End: Original strand, 27627802 - 27627924
Alignment:
Q  199 tccttcttgtaagaaacatggaacaattttcaagtgtgctggaa-ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaa 297  Q
    ||||| || ||||||| || || ||| |||||||| || | ||| ||||||||||||||| ||||||||||||||||  ||||||||||||||| |||||    
T  27627802 tcctttttataagaaatattgaccaagtttcaagtatgtttgaagctaaatttcatttgtgcccttatttattatga--gagaatattaaaagtaagtaa 27627899  T
Q  298 gttggtagattcaagagtaattaat 322  Q
    |||||| || | |||||||||||||    
T  27627900 gttggtggaataaagagtaattaat 27627924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 243 - 322
Target Start/End: Original strand, 26877257 - 26877336
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    |||||||||||||||  ||||||||||||||| | |||||||||||||| ||||||||||| || | |||||||||||||    
T  26877257 ctaaatttcatttgtgtccttatttattatgagatagaatattaaaagtaagtaagttggtggaataaagagtaattaat 26877336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 243 - 400
Target Start/End: Complemental strand, 56551570 - 56551417
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaatgtacgagttttcatggaaga 342  Q
    ||||||||||||||| |||||| ||||||| | |||||||| ||||||     ||||| || || | ||||||||||||| || | || | |||| || |    
T  56551570 ctaaatttcatttgtgcccttaattattattagagagaatactaaaagc----aagtttgtggaattaagagtaattaatataggggtatacatgaaata 56551475  T
Q  343 aatttaaatatataggagtattaaatgaaaataaccattttcaatttggtgccttggt 400  Q
    ||||||||| ||||||| ||||||||||||||||| ||||| ||| || | |||||||    
T  56551474 aatttaaatttataggaatattaaatgaaaataactatttttaatgtgtttccttggt 56551417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 3067821 - 3067884
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtaga 306  Q
    ||||||||||||||| |||||||||||||||| |||||| ||||||||| | |||||| |||||    
T  3067821 ctaaatttcatttgtgcccttatttattatgagagagaaaattaaaagtaaataagttagtaga 3067884  T

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Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 243 - 322
Target Start/End: Complemental strand, 50150416 - 50150337
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    |||||||||||||||  ||||||| ||||||| |||||||||||||||| ||||||||| | || | || ||||||||||    
T  50150416 ctaaatttcatttgtgtccttattgattatgagagagaatattaaaagtaagtaagttgatggaataaaaagtaattaat 50150337  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 244 - 322
Target Start/End: Original strand, 25934435 - 25934513
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    |||||||||||||| |||||||||||||||| |||||| ||||||| | | |||||| || || | ||||| |||||||    
T  25934435 taaatttcatttgtgcccttatttattatgagagagaaaattaaaaataaataagttagtggaataaagaggaattaat 25934513  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 244 - 300
Target Start/End: Original strand, 33313325 - 33313381
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagtt 300  Q
    ||||||| |||||| |||||||||||||||| |||||| ||||||||| | ||||||    
T  33313325 taaattttatttgtgcccttatttattatgagagagaaaattaaaagtaaataagtt 33313381  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 44538509 - 44538464
Alignment:
Q  246 aatttcatttgtacccttatttattatgaaagagaatattaaaagt 291  Q
    |||||||||| |||| |||||||| |||||| ||||||||||||||    
T  44538509 aatttcatttatacctttatttatcatgaaatagaatattaaaagt 44538464  T

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Target: scaffold0067 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 243 - 322
Target Start/End: Original strand, 6797 - 6876
Alignment:
Q  243 ctaaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagttggtagattcaagagtaattaat 322  Q
    ||||||||||||||| | |||||||||||||| | |||||||||||||| |||||||||||||| | |||||||||||||    
T  6797 ctaaatttcatttgtgcgcttatttattatgagaaagaatattaaaagtaagtaagttggtagaataaagagtaattaat 6876  T

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Target: scaffold0008 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 244 - 300
Target Start/End: Complemental strand, 258414 - 258358
Alignment:
Q  244 taaatttcatttgtacccttatttattatgaaagagaatattaaaagtgagtaagtt 300  Q
    |||||||||||||| || ||||||||||||| |||||||||||||| | ||||||||    
T  258414 taaatttcatttgtgcctttatttattatgagagagaatattaaaattaagtaagtt 258358  T

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