View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19679_high_3 (Length: 498)

Name: NF19679_high_3
Description: NF19679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19679_high_3
NF19679_high_3
[»] chr1 (18 HSPs)
chr1 (1-477)||(10978942-10979418)
chr1 (1-476)||(10903047-10903522)
chr1 (1-476)||(10914207-10914682)
chr1 (1-476)||(11010518-11010983)
chr1 (32-476)||(11028624-11029070)
chr1 (12-476)||(11005039-11005503)
chr1 (4-283)||(10932590-10932870)
chr1 (117-476)||(11032915-11033274)
chr1 (90-381)||(10993818-10994109)
chr1 (135-476)||(11007480-11007821)
chr1 (279-476)||(10974142-10974339)
chr1 (80-293)||(10901350-10901563)
chr1 (361-476)||(10901567-10901682)
chr1 (320-440)||(9082592-9082712)
chr1 (320-477)||(9432853-9433010)
chr1 (383-477)||(9384225-9384319)
chr1 (383-443)||(8999663-8999723)
chr1 (393-437)||(9096865-9096909)
[»] chr3 (1 HSPs)
chr3 (389-445)||(9159598-9159654)


Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 1 - 477
Target Start/End: Original strand, 10978942 - 10979418
Alignment:
Q  1 taattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978942 taattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaa 10979041  T
Q  101 catcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattga 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10979042 catcctctactggtggatcttgtaaacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattga 10979141  T
Q  201 aggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcact 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  10979142 aggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgttact 10979241  T
Q  301 tcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10979242 tcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatct 10979341  T
Q  401 ccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagga 477  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10979342 ccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagga 10979418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 10903047 - 10903522
Alignment:
Q  1 taattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaa 100  Q
    ||||||| ||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||| ||| |||||||||| ||||||| |||||||||||    
T  10903047 taattcagccaagaaccaaaaagagattaggttggtcccttgggatcactaattgatgtaccataggaagtccatgagttgctattattatcatctccaa 10903146  T
Q  101 catcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattga 200  Q
    | ||  ||  ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||    
T  10903147 cgtctgctgttggtggatcttgtggacaaaagtaaggcttattaggaatttgtaagtccccatcttctttttcaagcatctccaaaactttatccattga 10903246  T
Q  201 aggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcact 300  Q
    |||||| || ||||||||||| ||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||||||||||||| || |||    
T  10903247 aggacgatcctcgggttttgtttgtatacaccacaaagccacggtcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagttact 10903346  T
Q  301 tcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatct 400  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||| ||||||||||||| ||||||||||||||||||    
T  10903347 tcccttccatcatgtaatcgatcataaatccaaaaagggaaataaatttggctagattgttcggccaatgcattcaagttcttccttctacttgccatct 10903446  T
Q  401 ccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagg 476  Q
    |||| |||||||||||||| ||||| ||||||||||||||||||||  | ||||||||||||||||| ||||||||    
T  10903447 ccattaacaacatcccaaagctatagacatcagctttgtaagatatcattccaacatttctgtagaaaagttcagg 10903522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 10914207 - 10914682
Alignment:
Q  1 taattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaa 100  Q
    |||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||| ||| ||||||| || |||  || |||||||||||    
T  10914207 taattcaaccaagaaccagaaagagatcaggttggtcccttgggataactaactgatgtaccataagaagtccatgaattgctacaattatcatctccaa 10914306  T
Q  101 catcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattga 200  Q
    ||||  ||  ||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||||||    
T  10914307 catctgctgttggtggatcttgtggacaaaaataaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaactttttccattga 10914406  T
Q  201 aggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcact 300  Q
    |||||| || || |||||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||    
T  10914407 aggacgatcctctggttttgtttgtatacaccacaaagctacaatcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagttact 10914506  T
Q  301 tcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatct 400  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||  |||||||| ||||||| ||||||||| ||| ||||||| ||||||||||    
T  10914507 tcccttccatcatgtaatcgatcataaatccaaaaagggaaataaatttcactagattgatcagccaatgcattcaaattcttccttctgcttgccatct 10914606  T
Q  401 ccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagg 476  Q
    |||| |||||||||||||| ||||||||||||||||||| |||||||||||| |||||||| ||||||| ||||||    
T  10914607 ccattaacaacatcccaaagctatatacatcagctttgtgagatattgtgccgacatttctatagaataattcagg 10914682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 11010518 - 11010983
Alignment:
Q  1 taattcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaa 100  Q
    |||||||| | |||||||||| |||||||| |||||||||||||| ||||||||||||||||||  ||| |||||||||| ||| | |||         |    
T  11010518 taattcaaacgagaaccaaaa-gagatcagtttggtcccttggaaccactaactgatgtaccatcggaagtccatgagttgctactgtaa---------a 11010607  T
Q  101 catcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattga 200  Q
    ||||| ||| ||||| ||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  11010608 catccgctattggtgaatcttgtggacaaaagtaaggcttattaggaatctgcaagtctccatcttcttcttcaagcatctccaaaactttatccattga 11010707  T
Q  201 aggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcact 300  Q
    |||||| || || |||||||||||||||||||| || ||||||||||||||||||||||| |  || ||||||||||||||||| || ||||| || |||    
T  11010708 aggacgatcatcaggttttgtctgtatacaccataacgccacaatcatcattttctttgctagcttcatttcctgatctgtgtcgttctcaattgttact 11010807  T
Q  301 tcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatct 400  Q
    || ||||||||||| |||  |||||| ||||||||||| |||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||    
T  11010808 tcacttccatcatgaaatttatcataaatccaaaaaggaaaataaatttggctggattgctcagccaatgcattcaagttcttccttctacttgccatct 11010907  T
Q  401 ccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagg 476  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11010908 ccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagg 11010983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 32 - 476
Target Start/End: Complemental strand, 11029070 - 11028624
Alignment:
Q  32 ttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaacatcctctactggtggatcttgtagacaaaa 131  Q
    |||||| ||||| ||| ||||||||||||||||| ||| |||||||||| ||| ||| |||  ||||||||||||||||| ||||||||||  |||||||    
T  11029070 ttggtcacttgggatcgctaactgatgtaccataggaagtccatgagttgctactattatcgactccaacatcctctactagtggatcttgcggacaaaa 11028971  T
Q  132 gtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacac 231  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| || || |||||||| |||||||||    
T  11028970 gtaaggcttattaggaatttgcaagtctccatcttcttcttcaagcatctccaaaactttatccattgaaggacgatcctctggttttgtttgtatacac 11028871  T
Q  232 cacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcg--tcacttcccttccatcatgtaatcgatcatatat 329  Q
    ||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||| |    ||||||||||||||||||||||||||||| ||    
T  11028870 cacaaagccgcagtcatcattttctttgccaatttcatttcctgatctgtgtcattttcaatagatatacttcccttccatcatgtaatcgatcataaat 11028771  T
Q  330 ccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaaactatataca 429  Q
    ||| |||||||||||||||||||||||||| ||||||| ||||||| | ||| |||||||| | || |||||||| |||||||||||||| ||||| |||    
T  11028770 ccagaaagggaaataaatttggctagattgttcagccaatgcattctaattcttccttctattcgcaatctccattaacaacatcccaaagctatagaca 11028671  T
Q  430 tcagctttgtaagatattgtgccaacatttctgtagaatagttcagg 476  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  11028670 tcagctttgtaagatattgtgccaacatttctatagaatagttcagg 11028624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 476
Target Start/End: Complemental strand, 11005503 - 11005039
Alignment:
Q  12 agaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaacatcctctact 111  Q
    |||||||| | |||||||||||||| || || ||||| | | ||||||| || | |||  ||| ||  ||||| ||| | |||||| || ||||||  ||    
T  11005503 agaaccaacacgagatcaggttggttccatgaaatcatttattgatgtatcagaggaagaccaagaacttctagtattaccatctctaaaatcctcagct 11005404  T
Q  112 ggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattgaaggacggtcgt 211  Q
    ||| |||||||| || ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||| ||      
T  11005403 ggtagatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcactttatccattgaaggacgatcac 11005304  T
Q  212 cgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcacttcccttccatc 311  Q
    | |||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| | |||||||||||| ||||| || ||||| ||||||||    
T  11005303 ctggttttgtctgtatacaccataaagccacaatcatcattttctttgccaatttcatttcttcatctgtgtcattctcaattgttacttcacttccatc 11005204  T
Q  312 atgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaac 411  Q
    ||||||  || |||| ||||||||||||||||||||||||| |||||||||||||| || |||||||||| |||||||||||||||||||||||||||||    
T  11005203 atgtaactgaccataaatccaaaaagggaaataaatttggcaagattgctcagccaatggattcaagttcttccttctacttgccatctccatcaacaac 11005104  T
Q  412 atcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagg 476  Q
    |||||||| ||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  11005103 atcccaaagctatagacatcagctttgtgagatattgtgccgacatttctgtagaatagttcagg 11005039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 4 - 283
Target Start/End: Original strand, 10932590 - 10932870
Alignment:
Q  4 ttcaaccaagaaccaaaaagagatcaggttggtcccttggaatcactaactgatgtaccatacgaactccatgagtttctattataatcatctccaacat 103  Q
    |||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| ||| |||||||||| ||| ||  || |||||||||||    
T  10932590 ttcaaccaagaaccaaaaagagattaggttggtcccttgggatcactaactgatgtaccataggaagtccatgagttgctactactattatctccaacat 10932689  T
Q  104 cctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctcc-aacactttatccattgaag 202  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||    
T  10932690 cctctactggtggatcttgtggacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctcctaaaactttttccattgaag 10932789  T
Q  203 gacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgt 283  Q
    |||| || ||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  10932790 gacgatcctcgggatttgtttgtatacaccacaaagccacgatcatcattttctttgccaatttcatttcctgatctgtgt 10932870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 117 - 476
Target Start/End: Original strand, 11032915 - 11033274
Alignment:
Q  117 atcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattgaaggacggtcgtcgggt 216  Q
    |||||||| | || ||| |||||||||||| |||||||| ||  ||||||||||||||||||||||||||||||||||||||| |||||| ||    |||    
T  11032915 atcttgtacataatagtcaggcttattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggt 11033014  T
Q  217 tttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcacttcccttccatcatgta 316  Q
    || | ||| ||||||||||||||||| ||||||||||||||||||||||| ||||| |||| ||| |||||   ||| |||| |||||||||||| ||||    
T  11033015 ttcgcctgaatacaccacaaagccactatcatcattttctttgccaatttcatttcatgatttgtatcattcagaattgtcatttcccttccatcttgta 11033114  T
Q  317 atcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatccc 416  Q
    |  ||||||| | |||||||||||||||||| ||||| ||||| ||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||    
T  11033115 actgatcataaacccaaaaagggaaataaatctggcttgattgatcagccaatgcattcaagttcttccttctatttgccatctccatcaacaacatccc 11033214  T
Q  417 aaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagg 476  Q
    ||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  11033215 aaaactataaacatcagctttgtaagatattgtgccgacatttcggtagaatagttcagg 11033274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 90 - 381
Target Start/End: Complemental strand, 10994109 - 10993818
Alignment:
Q  90 atcatctccaacatcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacact 189  Q
    |||||||| |||||| ||| |||||  ||||||| || ||| ||||||||||||||| |||||||| |||||||||||||||||||||||||| | ||||    
T  10994109 atcatctctaacatcgtctgctggtatatcttgtggataaaggtaaggcttattaggcatttgcaaatccccatcttcttcttcaagcatctcaatcact 10994010  T
Q  190 ttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcatttt 289  Q
    ||||||||||||||||| ||    ||||||||||| |||||||| || ||||||||||||||||||||||||||||| ||||| | |||||||||||| |    
T  10994009 ttatccattgaaggacgatcactaggttttgtctgaatacaccataatgccacaatcatcattttctttgccaatttcatttcttcatctgtgtcattct 10993910  T
Q  290 caatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttc 381  Q
    |||| || ||||| ||||||||||||||  ||||||| ||||||||||| |||||||||||||||||||||||||| | |||||||||||||    
T  10993909 caattgttacttcacttccatcatgtaactgatcataaatccaaaaaggaaaataaatttggctagattgctcagctaatgcattcaagttc 10993818  T

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Target: chr1; HSP #10
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 135 - 476
Target Start/End: Original strand, 11007480 - 11007821
Alignment:
Q  135 aggcttattaggaatttgcaagtccccatcttcttcttcaagcatctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacaccac 234  Q
    ||||| |||||| |||||||| ||  ||||||||||||||||||||||||||||||||||||||| |||||| ||    ||||| |  || |||||||||    
T  11007480 aggctgattaggcatttgcaaatcttcatcttcttcttcaagcatctccaacactttatccattggaggacgatcactaggtttcgcttgaatacaccac 11007579  T
Q  235 aaagccacaatcatcattttctttgccaattttatttcctgatctgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaa 334  Q
    |||||||| ||||||||||||||||||||||| || || |||| |||  |||| ||||| || | ||| |||||||| |||||  ||||||| | |||||    
T  11007580 aaagccactatcatcattttctttgccaatttcatctcatgatttgtagcattctcaattgttatttctcttccatcttgtaactgatcataaacccaaa 11007679  T
Q  335 aagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaaactatatacatcagc 434  Q
    ||||||||||||  |||||||||||  |||||| | ||| ||||||| |||||||| ||||||||||||| |||||||||||||||||||| ||||||||    
T  11007680 aagggaaataaacctggctagattgaccagccaatacatccaagttcttccttctatttgccatctccattaacaacatcccaaaactataaacatcagc 11007779  T
Q  435 tttgtaagatattgtgccaacatttctgtagaatagttcagg 476  Q
    |||||||||||| ||||| ||||||| |||||||||||||||    
T  11007780 tttgtaagatatcgtgccgacatttcggtagaatagttcagg 11007821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 279 - 476
Target Start/End: Original strand, 10974142 - 10974339
Alignment:
Q  279 tgtgtcattttcaatcgtcacttcccttccatcatgtaatcgatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaag 378  Q
    ||||||||||||||| |  ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||| |||||||||     
T  10974142 tgtgtcattttcaatagatacttcccttccatcatgtaatcgatcataaatccagaaagggaaataaatttggctagattgatcggccaatgcattcaaa 10974241  T
Q  379 ttcctccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagg 476  Q
    ||| |||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  10974242 ttcttccttctactcgccatctccattaacaacatcccaaagctatagacatcagctttgtaagatattgtgccaatatttctgtagaacagttcagg 10974339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 80 - 293
Target Start/End: Original strand, 10901350 - 10901563
Alignment:
Q  80 ttctattataatcatctccaacatcctctactggtggatcttgtagacaaaagtaaggcttattaggaatttgcaagtccccatcttcttcttcaagcat 179  Q
    ||||| ||| |||||||| || ||||||  ||||| |||||||| || ||| ||||||||| ||||| |||||||| ||||||||||||| | |||||||    
T  10901350 ttctagtattatcatctcaaaaatcctcagctggtagatcttgtggataaaggtaaggcttcttaggcatttgcaaatccccatcttcttatgcaagcat 10901449  T
Q  180 ctccaacactttatccattgaaggacggtcgtcgggttttgtctgtatacaccacaaagccacaatcatcattttctttgccaattttatttcctgatct 279  Q
    ||| | ||||||||||||||||||||| ||    |||||||||||  ||||||| || |||||||||||| |||||||||||||||| ||||| | ||||    
T  10901450 ctcaatcactttatccattgaaggacgatcactaggttttgtctgagtacaccataatgccacaatcatcgttttctttgccaatttcatttcttcatct 10901549  T
Q  280 gtgtcattttcaat 293  Q
    |||||||| |||||    
T  10901550 gtgtcattctcaat 10901563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 361 - 476
Target Start/End: Original strand, 10901567 - 10901682
Alignment:
Q  361 tcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttc 460  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| |||||||    
T  10901567 tcagccaatgcattcaagttcttccttctacttgccatctccatcaacaacattccaaaactatagacatcagctttgtgagatattgtgccgacatttc 10901666  T
Q  461 tgtagaatagttcagg 476  Q
    ||||||||| ||||||    
T  10901667 tgtagaataattcagg 10901682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 320 - 440
Target Start/End: Complemental strand, 9082712 - 9082592
Alignment:
Q  320 gatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaa 419  Q
    |||||||||||||||| || ||||||| |||||| || ||||| ||| | |  |||| |||  ||||  | ||||||||||||||||| | |||||||||    
T  9082712 gatcatatatccaaaagggaaaataaagttggcttgaatgctctgccttggtgttcaggtttttcctcttgcttgccatctccatcaaaagcatcccaaa 9082613  T
Q  420 actatatacatcagctttgta 440  Q
    |||||| |||||||| |||||    
T  9082612 actataaacatcagccttgta 9082592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 320 - 477
Target Start/End: Complemental strand, 9433010 - 9432853
Alignment:
Q  320 gatcatatatccaaaaagggaaataaatttggctagattgctcagccattgcattcaagttcctccttctacttgccatctccatcaacaacatcccaaa 419  Q
    ||||||| |||||||| |||||||||| ||| || || ||||||||   || |||||| || || ||||||||||| || || ||||| | ||| |||||    
T  9433010 gatcataaatccaaaaggggaaataaagttgacttgaatgctcagcatgtgaattcaaatttcttcttctacttgcgatttcaatcaaaagcattccaaa 9432911  T
Q  420 actatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagga 477  Q
    |||||| ||||| || ||||  |||||| | |||| ||||  |||||| | |||||||    
T  9432910 actatacacatcggccttgtgtgatattctcccaatattttggtagaacaattcagga 9432853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 477
Target Start/End: Original strand, 9384225 - 9384319
Alignment:
Q  383 tccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagatattgtgccaacatttctgtagaatagttcagga 477  Q
    ||||| ||| |||||| |||||||| | ||| ||||| |||||||||||||| |||||||| | |   |||| |||| ||||||| |||||||||    
T  9384225 tccttttacctgccatttccatcaaaagcattccaaagctatatacatcagccttgtaagacactccaccaatatttttgtagaacagttcagga 9384319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 383 - 443
Target Start/End: Original strand, 8999663 - 8999723
Alignment:
Q  383 tccttctacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaaga 443  Q
    ||||| ||| ||||||||||||||| | ||||||||| ||||| |||||||| || |||||    
T  8999663 tccttttacctgccatctccatcaaaagcatcccaaagctataaacatcagccttataaga 8999723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 9096909 - 9096865
Alignment:
Q  393 tgccatctccatcaacaacatcccaaaactatatacatcagcttt 437  Q
    ||||||||||||||| | ||||||||| ||||| |||||||||||    
T  9096909 tgccatctccatcaaaagcatcccaaagctataaacatcagcttt 9096865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 445
Target Start/End: Original strand, 9159598 - 9159654
Alignment:
Q  389 tacttgccatctccatcaacaacatcccaaaactatatacatcagctttgtaagata 445  Q
    |||||||||| |||||||| | ||| ||||||||||| |||||||| ||||| ||||    
T  9159598 tacttgccatttccatcaaaagcattccaaaactataaacatcagccttgtatgata 9159654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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