View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19679_high_4 (Length: 443)
Name: NF19679_high_4
Description: NF19679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19679_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 5 - 428
Target Start/End: Complemental strand, 49448669 - 49448244
Alignment:
| Q |
5 |
caataagacagatcatgaaccctatacaggaaactcaaatgatccttccaatactgataatcaaaggaaataccttaagcgacaagtaatcctaatcaag |
104 |
Q |
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| T |
49448669 |
caataagacagataatgtaccctatacaggaaactcaaatgatccttccaatcctgataataaaaggaactaccttaagcgtcaagtaatcctaatcaag |
49448570 |
T |
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| Q |
105 |
aataaaaacaaattcatactctggctagtgataagatatcacagaaattaaggactcattctgactaaaccattattttgatcaatccctcagtccccta |
204 |
Q |
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| T |
49448569 |
aataaaaacaaattcatactctggctagtgataagatatcatagaaattaaggactcattctgactaaaccattattttgatcaatccctcagtccccta |
49448470 |
T |
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| Q |
205 |
ttacatactctaagccttgtttgtcgagatgatttcaacatacctgaaattgacttcaatagtctggagcattttccttgaacacattgatcagacagaa |
304 |
Q |
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| T |
49448469 |
ttacatactctaagccttgtttgtcgagatgatttcaacatacctgacattgacttcaatagtctggagcattttccttgaacacattgatcagacagaa |
49448370 |
T |
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| Q |
305 |
aacttcatgttgatgctagtttagccagcagacatttatttaaactttgttttggtgac--tattaacattcagttcaatgaaattcgatatgtcaactt |
402 |
Q |
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| T |
49448369 |
aacttcatgttgatgctagtttagccagcagacatttatttaaactttgttttggtgactgtattaacattcagttcaatgaaatttgatatgtcaactt |
49448270 |
T |
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| Q |
403 |
tatattaattgtttagtatcgaacat |
428 |
Q |
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| T |
49448269 |
tatattaattgtttagtatcgaacat |
49448244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 220 - 260
Target Start/End: Complemental strand, 49448142 - 49448102
Alignment:
| Q |
220 |
cttgtttgtcgagatgatttcaacatacctgaaattgactt |
260 |
Q |
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| T |
49448142 |
cttgtttgtcgagacgatttcaacatacctgacgttgactt |
49448102 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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