View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19679_low_1 (Length: 1113)
Name: NF19679_low_1
Description: NF19679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19679_low_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 961; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 961; E-Value: 0
Query Start/End: Original strand, 1 - 973
Target Start/End: Original strand, 30346038 - 30347010
Alignment:
| Q |
1 |
aaccatttgatgttattcattcagaaagtgttgcacttcctcattatgtagctaggaatctttcaaatcttgtagtgtcttggcatggaatagcacttga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30346038 |
aaccatttgatgttattcattcagaaagtgttgcacttcctcattatgtagctaggaatctttcaaatcttgtagtgtcttggcatggaatagcacttga |
30346137 |
T |
|
| Q |
101 |
gagtttgcaatcaagtatttttcaggatttagctagaagacctgatgaacctatttcacctcttttcaacaatagcttgcagggaattgttcctaaggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30346138 |
gagtttgcaatcaagtatttttcaggatttagctagaagacctgatgaacctatttcacctcttttcaacaatagcttgcagggaattgttcctaaggtt |
30346237 |
T |
|
| Q |
201 |
ctgaatgagataagattctttaagagttatgctcatcatgttgctattagtgatagctgtggtgagatgctaagagatttctatcaaattcctacaagaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30346238 |
ctgaatgagataagattctttaagagttatgctcatcatgttgctattagtgatagctgtggtgagatgctaagagatttctatcaaattcctacaagaa |
30346337 |
T |
|
| Q |
301 |
gagtgcatgtgattgttaatggggttgatgaggatgagtttggagaagatgctgaattgggaaggaaatttagaaccaaaattgggattccaagcaatgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30346338 |
gagtgcatgtgattgttaatggggttgatgaggatgagtttggagaagatgctgaattgggaaggaaatttagaaccaaaattgggattccaagcaatgc |
30346437 |
T |
|
| Q |
401 |
aagtttagtacttggtgtagcagggagattagttaaagacaaaggtcatcctttgcttcatgaagcgtattcaaagctaataacaaaacaccctaatgtt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30346438 |
aagtttagtacttggtgtagcagggagattagttaaagacaaaggtcatcctttgcttcatgaagcgtattcaaagctaataacaaaacaccctaatgtt |
30346537 |
T |
|
| Q |
501 |
tatttgattattgctggttctggaccatgggggaacaggtacaaggatttaggaaaccaagttcttgttctaggatcaatgagtccttccatgttgaaag |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30346538 |
tatttgattattgctggttctggaccatgggggaacaggtacaaggatttaggaaaccaagttcttgttctaggatcaatgagtccttccatgttgaaag |
30346637 |
T |
|
| Q |
601 |
cattttataatgctattgacattttcgtcaatccaacacttaggccgcaagggcttgatcttactttgatggaggctatgatgagtgggaagcctctttt |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30346638 |
cattttataatgctattgacattttcgtcaatccaacacttaggccacaagggcttgatcttactttgatggaggctatgatgagtgggaagcctctttt |
30346737 |
T |
|
| Q |
701 |
ggcatcaaggtttccaagcattaaaggtactcttttggttgatgatgagtatggttacatgttctctcctaatgtagagtccctattggaggcacttgaa |
800 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
30346738 |
ggcatcaaggtttccaagcattaaaggtactcttttggttgatgatgagtatggttacatgttctctcctaatgtagagtccctattggaggcacttcaa |
30346837 |
T |
|
| Q |
801 |
gcagtggtaaaagatggaccgcagaggctagcaaggagaggaaaagcttgccgcgagtatgctgcctcaatgttcacagcaaaaaagatggcattagcat |
900 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30346838 |
gcagtggtaaaagatggaccacagaggctagcaaggagaggaaaagcttgccgcgagtatgctgcctcaatgttcacagcaaaaaagatggcattagcat |
30346937 |
T |
|
| Q |
901 |
atgagaggttatttctatgtataaaagattctacattttgtatctacccttgaggcttagactagaaatacac |
973 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30346938 |
atgagaggttatttctatgtataaaagattctacattttgtatctacccttgaggcttagactagaaatacac |
30347010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 1005 - 1099
Target Start/End: Original strand, 30347042 - 30347138
Alignment:
| Q |
1005 |
agtacataataaagatgatgaaatctgaaggccatt--agtagttcatctctgtaaggattctaagaatgccattatgaatctatatatgcctcaac |
1099 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30347042 |
agtacataataaagatgatgaaatctgaaggccattttagtggttcatctctgtaaggattctaagaatgccattatgaatctatatatgcctcaac |
30347138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 187 - 955
Target Start/End: Complemental strand, 10841418 - 10840650
Alignment:
| Q |
187 |
ttgttcctaaggttctgaatgagataagattctttaagagttatgctcatcatgttgctattagtgatagctgtggtgagatgctaagagatttctatca |
286 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| || | ||| ||||||||||||||||||||||||| |||||||||||| |||||||| | || || |
|
|
| T |
10841418 |
ttgttcctaaggttctaaatgagataagattcttcaacaaatattctcatcatgttgctattagtgatagttgtggtgagatgttaagagatgtttacca |
10841319 |
T |
|
| Q |
287 |
aattcctacaagaagagtgcatgtgattgttaatggggttgatgaggatgagtttggagaagatgctgaattgggaaggaaatttagaaccaaaattggg |
386 |
Q |
| |
|
|||||| | |||||||| ||||||||| | ||||| ||||| ||||| || ||| |||||||||||||||| |||| | |||||||||||||||||| |
|
|
| T |
10841318 |
aattccaagtagaagagttcatgtgattctcaatggtgttgacgaggaagattttagagaagatgctgaattaggaaaagagtttagaaccaaaattggg |
10841219 |
T |
|
| Q |
387 |
attccaagcaatgcaagtttagtacttggtgtagcagggagattagttaaagacaaaggtcatcctttgcttcatgaagcgtattcaaagctaataacaa |
486 |
Q |
| |
|
|||||||| ||||| ||||||||| |||| ||||| || |||||||| || || ||||||||||| || ||||||||||| | ||||| ||| ||||||| |
|
|
| T |
10841218 |
attccaagtaatgctagtttagtatttggagtagctggaagattagtaaaggataaaggtcatccattacttcatgaagcattttcaaggcttataacaa |
10841119 |
T |
|
| Q |
487 |
aacaccctaatgtttatttgattattgctggttctggaccatgggggaacaggtacaaggatttaggaaaccaagttcttgttctaggatcaatgagtcc |
586 |
Q |
| |
|
| || | ||||| ||||||||| | ||||||||||||||||||| ||| ||||| |||||| | || ||||||||||||||||| |||||||||| ||| |
|
|
| T |
10841118 |
agtacaccaatgtgtatttgattgtagctggttctggaccatgggagaataggtataaggatatcgggaaccaagttcttgttcttggatcaatgaatcc |
10841019 |
T |
|
| Q |
587 |
ttccatgttgaaagcattttataatgctattgacattttcgtcaatccaacacttaggccgcaagggcttgatcttactttgatggaggctatgatgagt |
686 |
Q |
| |
|
||| ||||| | |||||| |||||||||||||| ||||| || ||||| ||| | || || ||||| ||||||||||| |||||||||||||||||| | |
|
|
| T |
10841018 |
ttctatgttaagagcattctataatgctattgatatttttgttaatcctacattaagaccacaaggacttgatcttacactgatggaggctatgatgatt |
10840919 |
T |
|
| Q |
687 |
gggaagcctcttttggcatcaaggtttccaagcattaaaggtactcttttggttgatgatgagtatggttacatgttctctcctaatgtagagtccctat |
786 |
Q |
| |
|
|| ||||| |||||||||||||||||||||||||||||||||| | || | ||||||||||| | |||||||||||| ||||| ||||| || || || |
|
|
| T |
10840918 |
ggaaagccacttttggcatcaaggtttccaagcattaaaggtagtattcttgttgatgatgaatttggttacatgttttctccaaatgtggactcacttc |
10840819 |
T |
|
| Q |
787 |
tggaggcacttgaagcagtggtaaaagatggaccgcagaggctagcaaggagaggaaaagcttgccgcgagtatgctgcctcaatgttcacagcaaaaaa |
886 |
Q |
| |
|
|||| | ||||||| ||| ||||||||||| | ||||||||| |||||| ||||| |||||||| || || || || ||||| || |||||||| |
|
|
| T |
10840818 |
tggaagaacttgaacaagttgtaaaagatggtaaggagaggctagaaaggaggggaaatgcttgccgtgaatacgcaaattctatgtttactgcaaaaaa |
10840719 |
T |
|
| Q |
887 |
gatggcattagcatatgagaggttatttctatgtataaaagattctacattttgtatctacccttgagg |
955 |
Q |
| |
|
||||||||||||||||||||| |||| ||||| |||||| ||||||||||| ||| |||||||| |
|
|
| T |
10840718 |
gatggcattagcatatgagagactattcctatgcataaaaagagatacattttgtacctatccttgagg |
10840650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 10841604 - 10841481
Alignment:
| Q |
1 |
aaccatttgatgttattcattcagaaagtgttgcacttcctcattatgtagctaggaatctttcaaatcttgtagtgtcttggcatggaatagcacttga |
100 |
Q |
| |
|
|||| ||||||||| |||||||||||||||| ||||||||||||| | || | ||||| |||||||||| || || |||||||| |||||| | || |
|
|
| T |
10841604 |
aaccttttgatgttgttcattcagaaagtgtagcacttcctcattggcttgcaaaagatcttccaaatcttgttgtatcctggcatggcatagcattgga |
10841505 |
T |
|
| Q |
101 |
gagtttgcaatcaagtatttttca |
124 |
Q |
| |
|
|| |||||||| || |||||||| |
|
|
| T |
10841504 |
aagcttgcaatcgagcatttttca |
10841481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University