View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19679_low_10 (Length: 246)
Name: NF19679_low_10
Description: NF19679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19679_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 55641564 - 55641784
Alignment:
| Q |
1 |
tatgatttacttattatttgaaacaattagtgtgcattaattgttttcacaatattcagcttataagcttgtgattcagtgattgagtnnnnnnngaaaa |
100 |
Q |
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| T |
55641564 |
tatgatttacttattatttgaaacaattagtgtgcatgaattgttttcacaatattcagcttataagcttgtgattcagtgattgagtaaaaaaagaaaa |
55641663 |
T |
|
| Q |
101 |
ccttataagcttgattatgtaacattacacgttgcgcactaaacgtatgggaagggggaaaagctttgtgattcataagagtatgtaatgaaatgtatgg |
200 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
55641664 |
ccttgtaagcttgattatgtaacattacacgttgcgcactaaacgtatgggaagggggaaaagctttgtgatt-ataagagtatgtaatgaaatgtatgg |
55641762 |
T |
|
| Q |
201 |
acacaccatctaacagaatatg |
222 |
Q |
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|||||||| ||||||||||||| |
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| T |
55641763 |
acacaccagctaacagaatatg |
55641784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 42661925 - 42662145
Alignment:
| Q |
1 |
tatgatttacttattatttgaaacaattagtgtgcattaattgttttcacaatattcagcttataagcttgtgattcagtgattgagtnnnnnnngaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
42661925 |
tatgatttacttattatttgaaacaatgagtgtgcattaattgttttcacaatattcagcttataagcttgtgattcagtgattgagtaaaaaaagaaaa |
42662024 |
T |
|
| Q |
101 |
ccttataagcttgattatgtaacattacacgttgcgcactaaacgtatgggaagggggaaaagctttgtgattcataagagtatgtaatgaaatgtatgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
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| T |
42662025 |
ccttataagcttgattatgtaacattacacgttgcgcactaaacgtatgggaagggggaaaagctttgtgatt-acaagagtatgtaatgaaatgtatgg |
42662123 |
T |
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| Q |
201 |
acacaccatctaacagaatatg |
222 |
Q |
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|| ||||| ||||||||||||| |
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| T |
42662124 |
acccaccagctaacagaatatg |
42662145 |
T |
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Back To:
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