View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19679_low_2 (Length: 953)
Name: NF19679_low_2
Description: NF19679
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19679_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 836; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 836; E-Value: 0
Query Start/End: Original strand, 15 - 946
Target Start/End: Complemental strand, 8285608 - 8284677
Alignment:
| Q |
15 |
acaattcatctctcatatgcaacttggaaacacaaacttcaactaaatgaagtcatgcacattgcacacgtctaagggatataattaaacgaaatcatac |
114 |
Q |
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| T |
8285608 |
acaattcatctctcatatgcaacttggaaacacaaacttcaactaaatgaaatcatgcacattgcacacgtctaagggatataattaaacgaaatcatac |
8285509 |
T |
|
| Q |
115 |
ccggtgctttaaattttgggtgcatatatatgtgcaagtttttaagggagcattatatgtaaaaattgatatatttttgttgttttaactgtctgattct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8285508 |
ccggtgctttaaattttgggtgcatatatatgtgcaagtttttaagggagcaatatatgtaaaaattgatatatttttgttgtttaaactgtctgattct |
8285409 |
T |
|
| Q |
215 |
cagaaagaggcttggtaatttcgagtttggcttaatcaaaaggcaagtctaatagaaaaaatgttccaactaaaatttaaactcaatttgttttaaacaa |
314 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8285408 |
cagaaagcggcttggtaatttcgagtttggcttaatcaaaaggcaagtctaatagaaaaaatgttccaactaaaatttaaactcaatttgttttaaacaa |
8285309 |
T |
|
| Q |
315 |
ttcatctttaattagaactaataacaactcgagttcaatcattagttttgtaacgcttgatgatgattaccttgatgtcgatgatcaataatggggaatg |
414 |
Q |
| |
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|||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8285308 |
ttcatctttaattagaactattaatgactcgagttcaatcattagttttgtaaaacttgatattgattaccttgatgtcgatgatcaataatggggaatg |
8285209 |
T |
|
| Q |
415 |
gaacagcatcaggtgcaccaatggtagtaggaggaagaggagcaagatcaactgactcatcatcattgcttgatgttgtagcaacaccaaaattaagttg |
514 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8285208 |
gaacagcatcaggtgcaccaatggtagtaggaggaagaggagcaagatcaactgactcatcatcattgcttgatgttgtagcaacaccaaaattaagttg |
8285109 |
T |
|
| Q |
515 |
tgggtcttgctggtacatgtgaatcatattcattgcttcctcttgaatcttctcttgatcatatcggtgattcattgaggcaattccacttttacttcca |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8285108 |
tgggtcttgctggtacatgtgaatcatattcattgcttcctcttgaatcttctcttgatcatatcggtgattcattgaggcaattccacttttacttcca |
8285009 |
T |
|
| Q |
615 |
tagttcatggtgatctcatgattaactagaggtacatcaacattctgttgaggtaagggttgaaccattgaggagtttccattttcacttccatagttca |
714 |
Q |
| |
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| T |
8285008 |
tagttcatggtgatctcatgattaactagaggtacatcaacattctgttgaggtaagggttgaaccattgaggagtttccattttcacttccatagttca |
8284909 |
T |
|
| Q |
715 |
tgaaaccagataagtgattaaacctatgtggtggtgtcatggcattaggcactacttcattaatatgattctccacagggaaagagaaaaatgggggtgt |
814 |
Q |
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| T |
8284908 |
tgaaaccagataagtgattaaacctatgtggtggtgtcatggcattaggcactacttcattaatatgattctgcacagggaaagagaaaaatgggggtgt |
8284809 |
T |
|
| Q |
815 |
aggtagttgtaaatcggtttcagtagggatgcgaaaataagcatcaacttggttttggttcacggacaccgcgggtgaattagaaaacaccgccatccca |
914 |
Q |
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| T |
8284808 |
aggtagttgtaaatcggttccagtaggggtttgaaaataagcatcaacttggttttggttcaccgagactgcgggtgaattagaaaacaccaccatccca |
8284709 |
T |
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| Q |
915 |
tcattagcattagagtatccaatattcttcga |
946 |
Q |
| |
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||||||||||| ||| |||| ||||| ||||| |
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| T |
8284708 |
tcattagcattggagaatccgatattgttcga |
8284677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 444 - 573
Target Start/End: Complemental strand, 34687276 - 34687150
Alignment:
| Q |
444 |
ggaggaagaggagcaagatcaactgactcatcatcattgcttgatgttgtagcaacaccaaaattaagttgtgggtcttgctggtacatgtgaatcatat |
543 |
Q |
| |
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||||| ||||||||||||||| ||| ||||||||| ||||| ||||| | ||||||||||||| |||||||||||| |||| |||||| ||||||| |
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| T |
34687276 |
ggaggtagaggagcaagatcagttga---atcatcattacttgaagttgtcgtgacaccaaaattaaattgtgggtcttgttggtgcatgtgcatcatat |
34687180 |
T |
|
| Q |
544 |
tcattgcttcctcttgaatcttctcttgat |
573 |
Q |
| |
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|||| |||||||||||||| |||||||||| |
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| T |
34687179 |
tcatcgcttcctcttgaatattctcttgat |
34687150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 444 - 670
Target Start/End: Complemental strand, 34695205 - 34694979
Alignment:
| Q |
444 |
ggaggaagaggagcaagatcaactgactcatcatcattgcttgatgttgtagcaacaccaaaattaagttgtgggtcttgctggtacatgtgaatcatat |
543 |
Q |
| |
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||||| ||||||||||||||| ||| | ||||||||| ||||| | ||| | |||||||||||||||||||||||||| || | ||| || ||||||| |
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| T |
34695205 |
ggagggagaggagcaagatcagttgaatgatcatcattacttgaagctgtcgtgacaccaaaattaagttgtgggtcttgttgatgcatatgcatcatat |
34695106 |
T |
|
| Q |
544 |
tcattgcttcctcttgaatcttctcttgatcatatcggtgattcattgaggcaattccacttttacttccatagttcatggtgatctcatgattaactag |
643 |
Q |
| |
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|| | ||||||||||| |||||||||||| | ||| ||| |||||| |||||| |||| |||||||||||||| || | |||| ||||| ||| |
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| T |
34695105 |
gaatcgactcctcttgaatattctcttgatcaaaaaggtcattgattgagcagattccatttttgtttccatagttcatgatgttatcataattaagtag |
34695006 |
T |
|
| Q |
644 |
aggtacatcaacattctgttgaggtaa |
670 |
Q |
| |
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||| | ||||||||| | ||||||||| |
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| T |
34695005 |
aggcagatcaacattttcttgaggtaa |
34694979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 717 - 920
Target Start/End: Complemental strand, 34694959 - 34694753
Alignment:
| Q |
717 |
aaaccagataagtgattaaacctatgtggtggtgtcatggcattaggcactac---ttcattaatatgattctccacagggaaagagaaaaatgggggtg |
813 |
Q |
| |
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|||||||| |||| |||||||| | ||| | | ||||| ||||| ||||||| || ||||||||||||||| || ||||||||| |||||||||||| |
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| T |
34694959 |
aaaccagagaagtaattaaacccctctggcgttatcatgtcattaagcactacccttttattaatatgattctcaaccgggaaagaggaaaatgggggtg |
34694860 |
T |
|
| Q |
814 |
taggtagttgtaaatcggtttcagtagggatgcgaaaataagcatcaacttggttttggttcacggacaccgcgggtgaattagaaaacaccgccatccc |
913 |
Q |
| |
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|||||||||||| | ||||| |||| || || || ||||| |||| |||| |||||||||| || | ||||||||||||| | || | ||||||| |
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| T |
34694859 |
taggtagttgtagaccggttccagtgagggtgtgaggataagtatcatcttgattttggttcagagatattgcgggtgaattaggcaccatcaccatccc |
34694760 |
T |
|
| Q |
914 |
atcatta |
920 |
Q |
| |
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||||||| |
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|
| T |
34694759 |
atcatta |
34694753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 749 - 837
Target Start/End: Complemental strand, 34687001 - 34686910
Alignment:
| Q |
749 |
tgtcatggcattaggcactac---ttcattaatatgattctccacagggaaagagaaaaatgggggtgtaggtagttgtaaatcggtttcag |
837 |
Q |
| |
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||||||| ||||| ||||||| |||||||||||||||||| || ||||||||| ||||||||||||||||||||||| | ||||||||| |
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| T |
34687001 |
tgtcatgtcattaagcactaccctttcattaatatgattctcaaccgggaaagagggaaatgggggtgtaggtagttgtagaccggtttcag |
34686910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 136
Target Start/End: Complemental strand, 34697336 - 34697227
Alignment:
| Q |
27 |
tcatatgcaacttggaaacacaaacttcaactaaatgaagtcatgcacattgcacacgtctaagggatataattaaacgaaatcatacccggtgctttaa |
126 |
Q |
| |
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|||||||||||| | || ||||||| ||||| |||||||| |||| |||||||||||||| | | ||||| || ||| || ||||||| ||||||||| |
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| T |
34697336 |
tcatatgcaactcgaaagcacaaacatcaaccaaatgaagccatgaacattgcacacgtccatgagatattatagaacataaccataccccgtgctttaa |
34697237 |
T |
|
| Q |
127 |
attttgggtg |
136 |
Q |
| |
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||| |||||| |
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|
| T |
34697236 |
attctgggtg |
34697227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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