View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1967_high_2 (Length: 453)
Name: NF1967_high_2
Description: NF1967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1967_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-113; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 54761815 - 54761608
Alignment:
| Q |
18 |
tataaggtattggtactcaaccaaactccagaatacataagaacttaccaaataattttacttaaaaaagtgaattttgatatctttgcacacttaaaaa |
117 |
Q |
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| T |
54761815 |
tataaggtattggtactcaaccaaactccagaatacataagaacttaccaaataattttacttaaaaaagtgaattttgatatctttgcacacttaaaaa |
54761716 |
T |
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| Q |
118 |
ttaatgacttctcaattcaacttccctatattctctaaagtaggaagttgtctccagtaaaatgagggggtagattgagaaatcatcaaaagaaattgtt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54761715 |
ttaatgacttctcaattcaacttccctatattctctaaagtaggaagttgtctccagtaaaatgagggggtagattgagaaatcatcaaaagaaattgtt |
54761616 |
T |
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| Q |
218 |
tggaggcc |
225 |
Q |
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|||||||| |
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| T |
54761615 |
tggaggcc |
54761608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 18 - 225
Target Start/End: Complemental strand, 54769269 - 54769062
Alignment:
| Q |
18 |
tataaggtattggtactcaaccaaactccagaatacataagaacttaccaaataattttacttaaaaaagtgaattttgatatctttgcacacttaaaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54769269 |
tataaggtattggtactcaaccaaactccagaatacataagaacttaccaaataattttacttaaaaaagtgaattttgatatctttgcacacttaaaaa |
54769170 |
T |
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| Q |
118 |
ttaatgacttctcaattcaacttccctatattctctaaagtaggaagttgtctccagtaaaatgagggggtagattgagaaatcatcaaaagaaattgtt |
217 |
Q |
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| T |
54769169 |
ttaatgacttctcaattcaacttccctatattctctaaagtaggaagttgtctccagtaaaatgagggggtagattgagaaatcatcaaaagaaattgtt |
54769070 |
T |
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| Q |
218 |
tggaggcc |
225 |
Q |
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|||||||| |
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| T |
54769069 |
tggaggcc |
54769062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 264 - 442
Target Start/End: Complemental strand, 54761569 - 54761391
Alignment:
| Q |
264 |
cccgtatccaacgaattcgggggcccaataaaaacacactcacttcgttttctcggatggatgcagtttcttttgttatcgtgcgtgattctgaaatgag |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54761569 |
cccgtatccaacgaattcgggggcccaataaaaacacactcacttcgttttctcggatggatgcagtttcttttgttatcgtgcgtgattctgaaatgag |
54761470 |
T |
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| Q |
364 |
ggtttaaggttgttccgaccattgtctcacgttgttgttctctctttcgtctgatctacttctggtaataactaccttt |
442 |
Q |
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| T |
54761469 |
ggtttaaggttgttccgaccattgtctcacgttgttgttctctctttcgtctgatctacttctggtaataactaccttt |
54761391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 264 - 442
Target Start/End: Complemental strand, 54769023 - 54768845
Alignment:
| Q |
264 |
cccgtatccaacgaattcgggggcccaataaaaacacactcacttcgttttctcggatggatgcagtttcttttgttatcgtgcgtgattctgaaatgag |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54769023 |
cccgtatccaacgaattcgggggcccaataaaaacacactcacttcgttttctcggatggatgcagtttcttttgttatcgtgcgtgattctgaaatgag |
54768924 |
T |
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| Q |
364 |
ggtttaaggttgttccgaccattgtctcacgttgttgttctctctttcgtctgatctacttctggtaataactaccttt |
442 |
Q |
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| T |
54768923 |
ggtttaaggttgttccgaccattgtctcacgttgttgttctctctttcgtctgatctacttctggtaataactaccttt |
54768845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 264 - 445
Target Start/End: Complemental strand, 54745484 - 54745303
Alignment:
| Q |
264 |
cccgtatccaacgaattcgggggcccaataaaaacacactcacttcgttttctcggatggatgcagtttcttttgttatcgtgcgtgattctgaaatgag |
363 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54745484 |
cccgtatccaacgaattcgtgggcccaataaaaacacactcacttcgttttctcggatggatgcagtttcttttgttatcgtgcgtgattctgaaatgag |
54745385 |
T |
|
| Q |
364 |
ggtttaaggttgttccgaccattgtctcacgttgttgttctctctttcgtctgatctacttctggtaataactacctttgct |
445 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
54745384 |
ggtttaaggttgttccgaccattgtctcacgttgttgttctctctttcgtctgatctatttctggtaataactacctttgct |
54745303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 64 - 225
Target Start/End: Complemental strand, 54745689 - 54745528
Alignment:
| Q |
64 |
accaaataattttacttaaaaaagtgaattttgatatctttgcacacttaaaaattaatgacttctcaattcaacttccctatattctctaaagtaggaa |
163 |
Q |
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| T |
54745689 |
accaaataattttacttaaaaaattgaattttgatatctttgcacacttaaaaattaatgacttctcaattcaacttccctatattctctaaagtaggaa |
54745590 |
T |
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| Q |
164 |
gttgtctccagtaaaatgagggggtagattgagaaatcatcaaaagaaattgtttggaggcc |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54745589 |
gttgtctccagtaaaatgagggggtagattgagaaatcatcaaaagaaattgtttggaggcc |
54745528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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