View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1967_high_6 (Length: 282)
Name: NF1967_high_6
Description: NF1967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1967_high_6 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 12 - 282
Target Start/End: Original strand, 45270940 - 45271210
Alignment:
| Q |
12 |
gtaccaaagggggcactgttctgtatattggtaccggcgttttggttcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgt |
111 |
Q |
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| T |
45270940 |
gtacaaaaggtggcagtgttctgtgtgttggtaccggccatttggttctttctaccagtgacaatggtctttgcagggccatcaccatacataagaatgt |
45271039 |
T |
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| Q |
112 |
taacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataacatatctgcctttgtttcccttagggtaagaggcaagagc |
211 |
Q |
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| T |
45271040 |
taacagcctccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataacatatctgtctttgtttcccttagggtaagaggcaagagc |
45271139 |
T |
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| Q |
212 |
agcctggatggttttaaattggccgctaccatccttggcaacaacaacattaggcctaatattttctctcc |
282 |
Q |
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| T |
45271140 |
agcctggatggttttaaattggccgctaccatcattggcaacaacagcattaggcctaatatttgctctcc |
45271210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 58 - 282
Target Start/End: Original strand, 45282760 - 45282984
Alignment:
| Q |
58 |
tcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggc |
157 |
Q |
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| T |
45282760 |
tctttctaccagtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggc |
45282859 |
T |
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| Q |
158 |
cttaacgtagataacatatctgcctttgtttcccttagggtaagaggcaagagcagcctggatggttttaaattggccgctaccatccttggcaacaaca |
257 |
Q |
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| T |
45282860 |
cttaacgtagataacatatctgcctttgtttcccttagggtaagaggcaagagcagcctggatggttttaaattggccgctaccatccttggcaacaaca |
45282959 |
T |
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| Q |
258 |
acattaggcctaatattttctctcc |
282 |
Q |
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| T |
45282960 |
gcattaggcataatatttgctctcc |
45282984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 56 - 282
Target Start/End: Original strand, 45274517 - 45274743
Alignment:
| Q |
56 |
gttcttactaccagtgacaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccg |
155 |
Q |
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| T |
45274517 |
gttctttctaccggtgacaatggtccttgcagggccatcaccatacataagaatgttaacagcatccttgggtacagtgatgtattcgtcatagacacca |
45274616 |
T |
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| Q |
156 |
gccttaacgtagataacatatctgcctttgtttcccttagggtaagaggcaagagcagcctggatggttttaaattggccgctaccatccttggcaacaa |
255 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
45274617 |
gccttaacgtagataaaatacctgcctttgtttcccttaggataagaggcaagagcagcctggatggttttaaattggccgctaccatcattggcaacaa |
45274716 |
T |
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| Q |
256 |
caacattaggcctaatattttctctcc |
282 |
Q |
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| T |
45274717 |
cagcattaggcctaatatttgctctcc |
45274743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 72 - 282
Target Start/End: Original strand, 45294162 - 45294372
Alignment:
| Q |
72 |
acaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataa |
171 |
Q |
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|||||||| ||| | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |||||||| || ||||||||||||||| |
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| T |
45294162 |
acaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccagccttaacgtagatag |
45294261 |
T |
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| Q |
172 |
catatctgcctttgtttcccttagggtaagaggcaagagcagcctggatggttttaaattggccgctaccatccttggcaacaacaacattaggcctaat |
271 |
Q |
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| T |
45294262 |
tatatctgcctttgttccccttagggtaagcggcaatagcagcctggatggttttaaattgaccgctaccatccttggcaacaacagcattagccccaac |
45294361 |
T |
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| Q |
272 |
attttctctcc |
282 |
Q |
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|||| |||||| |
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| T |
45294362 |
atttgctctcc |
45294372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 72 - 282
Target Start/End: Original strand, 45303122 - 45303332
Alignment:
| Q |
72 |
acaatggtttttgcagggccatcaccatacataagaatgttaacagcatccttggggacagtgatgtattcgtcatagacaccggccttaacgtagataa |
171 |
Q |
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|||||||| ||| | |||||||||||||||||||||||||||||||| || ||||| | |||||||||||| |||||||| || ||||||||||||||| |
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| T |
45303122 |
acaatggtctttccggggccatcaccatacataagaatgttaacagcgtctttgggaatagtgatgtattcatcatagacgccagccttaacgtagatag |
45303221 |
T |
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| Q |
172 |
catatctgcctttgtttcccttagggtaagaggcaagagcagcctggatggttttaaattggccgctaccatccttggcaacaacaacattaggcctaat |
271 |
Q |
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||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || || |
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| T |
45303222 |
tatatctgcctttgttccccttagggtaagcggcaatagcagcctggatggttttaaattgaccgctaccatccttggcaacaacagcattagccccaac |
45303321 |
T |
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| Q |
272 |
attttctctcc |
282 |
Q |
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|||| |||||| |
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| T |
45303322 |
atttgctctcc |
45303332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 203
Target Start/End: Original strand, 38588231 - 38588302
Alignment:
| Q |
132 |
gtgatgtattcgtcatagacaccggccttaacgtagataacatatctgcctttgtttcccttagggtaagag |
203 |
Q |
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|||||||| ||||||||||| || ||||| || ||||||| |||||||||||| ||||||||| |||||| |
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| T |
38588231 |
gtgatgtactcgtcatagaccccagccttgacatagataatgtatctgcctttgaatcccttaggataagag |
38588302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 38583244 - 38583289
Alignment:
| Q |
138 |
tattcgtcatagacaccggccttaacgtagataacatatctgcctt |
183 |
Q |
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||||||||||||||||| ||||| |||||||| |||||||| |||| |
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| T |
38583244 |
tattcgtcatagacaccagccttgacgtagatgacatatctacctt |
38583289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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