View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1967_high_8 (Length: 239)
Name: NF1967_high_8
Description: NF1967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1967_high_8 |
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| [»] scaffold0016 (3 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 48799 - 49022
Alignment:
| Q |
1 |
aaaggcacttttatttgatcagatttcatttctgatttctaacttgcaagagtgtgacgtttttcaaatatcctctttctttgattctgttaacggcgac |
100 |
Q |
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| T |
48799 |
aaaggcacttttacttgatcagatttcatttctgatttctaacttgcaagagtgtgacgtttttcaaatatcctctttctttgattctgttaacggcgac |
48898 |
T |
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| Q |
101 |
gatttggctgaatcatctaaaacagctggaaacatnnnnnnnnnnnnnnnnnacagaacatataaaatagtttggtttgggtaaatcccacatcgaaggt |
200 |
Q |
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| T |
48899 |
gatttggctgaatcatctaaaacagctggaaacatgaggaggaggaggaggaacagaacatataaaatagtttggtttgggtaaatcccacatcgaaggt |
48998 |
T |
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| Q |
201 |
gctgaaataacaataggatgattt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
48999 |
gctgaaataacaataggatgattt |
49022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 23 - 135
Target Start/End: Original strand, 79443 - 79555
Alignment:
| Q |
23 |
atttcatttctgattt-ctaacttgcaagagtgtgacgtttttcaaatatcctctttctttgattctgttaacggcgacgatttggctgaatcatctaaa |
121 |
Q |
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| T |
79443 |
atttcatttctgattttctaacttacaaaagtatggcgtttctctaaaatcctctt-ctttgattcggttaacggcggcgatgtggctgaatcatataaa |
79541 |
T |
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| Q |
122 |
acagctggaaacat |
135 |
Q |
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| T |
79542 |
acagctagaaacat |
79555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 79578 - 79646
Alignment:
| Q |
153 |
acagaacatataaaatagtttggtttgggtaaatcccacatcgaaggtgctgaaataacaataggatgat |
222 |
Q |
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| T |
79578 |
acaggacatataaaaccgtttggtttgggt-agtcccacatggacggtgctgaaaaaacaaaaggatgat |
79646 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 4907766 - 4907698
Alignment:
| Q |
26 |
tcatttctgatttctaacttgcaagagtgtgacgtttttcaaatatcctctttctttgattctgttaacg |
95 |
Q |
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| T |
4907766 |
tcatttctgatttgtaacttgcaagagtgtggcgtttctctaatatcttc-ctctttgattcagttaacg |
4907698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 21177705 - 21177621
Alignment:
| Q |
15 |
ttgatcagatttcatttctgatttctaacttgcaagagtgtg--acgtttttcaaatatcctctttctttgattctgttaacggcg |
98 |
Q |
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||||||| || |||| |||||||||||||||||||||||||| ||||| || || |||||| |||||||||| |||||||||| |
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| T |
21177705 |
ttgatcacatgtcatctctgatttctaacttgcaagagtgtggcgcgtttctctaaaatcctc-atctttgattcggttaacggcg |
21177621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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