View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1967_low_1 (Length: 773)
Name: NF1967_low_1
Description: NF1967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1967_low_1 |
 | |
|
| [»] scaffold0161 (3 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
| [»] scaffold0118 (1 HSPs) |
| | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
| [»] scaffold0317 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 598; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 1 - 691
Target Start/End: Original strand, 2792099 - 2792777
Alignment:
| Q |
1 |
ttgtggtcttgcaacacattttgtcccttcatcggtatgctacatactactatagttttgtgctttttctgctgatttgcatctttggtaaacaaatact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2792099 |
ttgtggtcttgcaacacattttgtcccttcatcggtatgctacatactactagagttttgtgctttttctgctgatttgcatctttggtaaacaaatact |
2792198 |
T |
|
| Q |
101 |
aacgagtcataagaagtgtatgggaaatttagtgcagtttcgaagtatagttttgtgctttttctcctgaatcaaactcttttttcatttgaacctaacg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
2792199 |
aacgagtcataagaagtgtatgggaaatttagtgcagtttcgaagtatagttttgtgctttttctcctgaatcaaactcttttttcatttgaacctaaag |
2792298 |
T |
|
| Q |
201 |
gtgtaaaaaggtcattggtggttaaacttatgattagggagggaatagtgttctctatggtttatcatttttattttgttgattccacctttgattactt |
300 |
Q |
| |
|
| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2792299 |
gggtaaaaaggtcattggtggttaaacttatgactagggagggaatagtgttctctatggtttatcatttttattttgttgattccacctttgattactt |
2792398 |
T |
|
| Q |
301 |
ccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcact |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
2792399 |
ccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttttaatttgcttttttgatattgtgtatgtcgatcact |
2792498 |
T |
|
| Q |
401 |
ctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatatgccactttaatacttatatatgaaactctacaaaacc |
500 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2792499 |
ctcaatcatcatttagtttgattgtttctacgagcttaattgtaactctaaaagtaataatatgccactttaatacttatatatgaaactctacaaaacc |
2792598 |
T |
|
| Q |
501 |
agcgcatcacacggcttagagtctagttataataaaagcttgctaacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcc |
600 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2792599 |
agcgcataacacgggttagagtctagttataataaaagcttgctaatccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcc |
2792698 |
T |
|
| Q |
601 |
tctagatctcagtccagatctcaggttcggttttctctggtgccaatttaaaagaaattgttatgtggtaatagaaagaaccgccaagaat |
691 |
Q |
| |
|
||| ||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
2792699 |
tct------------agatctcaggttcggttctctccggtgccaatttaaaagaaattgttatgtcgtaatagaaagaaccgccaagaat |
2792777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 2782436 - 2782595
Alignment:
| Q |
1 |
ttgtggtcttgcaacacattttgtcccttcatcggtatgctacatactactatagttttgtgctttttctgctgatttgcatctttggtaaacaaatact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2782436 |
ttgtggtcttgcaacacattttgtcccttcatcggtatgctacatactactatagttttgtgctttttctgctgatttgcatctttggtaaacaaatact |
2782535 |
T |
|
| Q |
101 |
aa-------cgagtcataagaagtgt------atgggaaatttagtgcagtttcgaagta |
147 |
Q |
| |
|
|| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2782536 |
aactccagtcgagtcataagaagtgtacattcatgggaaatttagtgcagtttcgaagta |
2782595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 265 - 528
Target Start/End: Original strand, 44164735 - 44164997
Alignment:
| Q |
265 |
tcatttttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgttt |
363 |
Q |
| |
|
||||||||||| |||| ||| ||| |||||||| || ||| ||||||||||| ||||||||||||||||||||||| ||||||||| || | ||||| |
|
|
| T |
44164735 |
tcatttttattgtgtttatttccatgtttgattattttcacataatttaatttatgactttgattccatattcatttttgttgatgcaaactga-tgttt |
44164833 |
T |
|
| Q |
364 |
ctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat |
463 |
Q |
| |
|
|||||| |||||||| ||| || ||||||| |||||||||||| || || |||||||||||||| || |||| ||||||||||||| ||||||||| |
|
|
| T |
44164834 |
ttaatttt-ttttttgagattttgcatgtcgaccactctcaatcatcacatagtttgattgtttctatgactttaagtgtaactctaaaattaataatat |
44164932 |
T |
|
| Q |
464 |
-gccactttaatacttatatatgaaactctacaaaaccagcgcatcacacggcttagagtctagtt |
528 |
Q |
| |
|
|||||||| | | | | ||||||||||||||||||| | ||||| |||| ||||||||||||| |
|
|
| T |
44164933 |
agccactttga-aataacatatgaaactctacaaaactcgtacatcatacgggttagagtctagtt |
44164997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 682 - 757
Target Start/End: Original strand, 2792922 - 2792997
Alignment:
| Q |
682 |
cgccaagaatactcccaaggtgtaagtatatgcaaagaaaaattaaattgtagacccaccaaaattaaactcatat |
757 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2792922 |
cgccaagaatactcccaaggtgtaagtatatgcaaagaaaaattaaattgtagacccaccaccattaaactcatat |
2792997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 290 - 492
Target Start/End: Complemental strand, 17724628 - 17724434
Alignment:
| Q |
290 |
tttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgta |
389 |
Q |
| |
|
||||||||||| ||| ||||||||||| ||||| ||||||||||||||||| ||||||||| | | |||||||||||||| ||| || | |
|
|
| T |
17724628 |
tttgattactttcacataatttaatttatgactttaattccatattcatttttgttgatgcaaaca---------tcatttgcttttttgaaattttgca |
17724538 |
T |
|
| Q |
390 |
tgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaatacttatatatgaaa |
488 |
Q |
| |
|
|||| | |||||||||||| || ||| |||||||||||||| || || | ||| ||||||||| ||||||||| | || ||| |||||||||||||||| |
|
|
| T |
17724537 |
tgtctaccactctcaatcatcacttagtttgattgtttctatgactttgaatgtgactctaaaattaataatatagtcagttttatacttatatatgaaa |
17724438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 545 - 595
Target Start/End: Original strand, 33819687 - 33819737
Alignment:
| Q |
545 |
aacccacttgagttggcctaatggttttgacttgagatctgagagtatgtt |
595 |
Q |
| |
|
||||||||| ||||| ||||||||| |||||||| ||||||||||| |||| |
|
|
| T |
33819687 |
aacccacttaagttgacctaatggtattgacttgggatctgagagtgtgtt |
33819737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 1e-46; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 320 - 528
Target Start/End: Complemental strand, 30694549 - 30694341
Alignment:
| Q |
320 |
actttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaattt |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||| ||||||||||||||||||| ||||| || ||| ||| |
|
|
| T |
30694549 |
actttgattccatattcatttttattgatgcaaactaaatgttgttaatttgcttctttgagattgtgtatgtcgatcactttcaattgtcacttacttt |
30694450 |
T |
|
| Q |
420 |
gattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaata-cttatatatgaaactctacaaaaccagcgcatcacacggctt |
517 |
Q |
| |
|
|| ||||||| ||| |||| |||||||||| |||||||||||| |||| ||| ||| |||||||||||||||||||||||| | ||||| ||||| || |
|
|
| T |
30694449 |
gaatgtttct--gagtttaaatgtaactctacaagtaataatatagccaatttgatattttatatatgaaactctacaaaacccgtgcatcgcacgggtt |
30694352 |
T |
|
| Q |
518 |
agagtctagtt |
528 |
Q |
| |
|
||||||||||| |
|
|
| T |
30694351 |
agagtctagtt |
30694341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 290 - 500
Target Start/End: Complemental strand, 33813283 - 33813073
Alignment:
| Q |
290 |
tttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgta |
389 |
Q |
| |
|
||||||||||| ||| |||||||||||| ||||||||||||||||||||||| ||||| ||| || ||| ||| |||||| ||| |||| ||| || | |
|
|
| T |
33813283 |
tttgattactttcacaaaatttaatttatgactttgattccatattcatttttgttgatacaaact-aatatttttaatttattttgttgagattttgca |
33813185 |
T |
|
| Q |
390 |
tgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaatacttatatatgaaa |
488 |
Q |
| |
|
|||||| || ||||||||| | ||| |||||||||||||| || |||| ||||||||||||| ||||||||| |||||||||||||||| | || ||| |
|
|
| T |
33813184 |
tgtcgaccattctcaatcattacttagtttgattgtttctatgactttaaatgtaactctaaaattaataatatagccactttaatacttacagataaaa |
33813085 |
T |
|
| Q |
489 |
ctctacaaaacc |
500 |
Q |
| |
|
|||||||||||| |
|
|
| T |
33813084 |
ctctacaaaacc |
33813073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 320 - 500
Target Start/End: Complemental strand, 46589764 - 46589584
Alignment:
| Q |
320 |
actttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaattt |
419 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||| |||||||| ||||||||||| ||||| |||||| |||||||||| | ||||| || ||||||| |
|
|
| T |
46589764 |
actttgatttcatattcatttttgttgatgcaaattaaatgttgctaatttgcttctttgagattgtgcatgtcgatcaatttcaattgtcacttaattt |
46589665 |
T |
|
| Q |
420 |
gattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaat-acttatatatgaaactctacaaaacc |
500 |
Q |
| |
|
|||||||||| ||| |||| ||||||||| || ||||||||| |||| ||| || | |||||||||||||| ||||||||| |
|
|
| T |
46589664 |
gattgtttct--gagtttaaacgtaactctacaaataataatatagccaatttgataatttatatatgaaactgtacaaaacc |
46589584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 250 - 348
Target Start/End: Complemental strand, 45730596 - 45730497
Alignment:
| Q |
250 |
gttctctatggtttatcatttttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgat |
348 |
Q |
| |
|
||||| |||| ||| ||||||||||| |||| ||| ||| ||||||||| ||||||||||||||||||| | |||||||||||||| |||||| ||||| |
|
|
| T |
45730596 |
gttctttatgatttgtcatttttattgtgttcatttccagctttgattagttccactaaatttaatttatgattttgattccatatttatttttgttgat |
45730497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 330 - 527
Target Start/End: Complemental strand, 45730493 - 45730303
Alignment:
| Q |
330 |
catattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttct |
429 |
Q |
| |
|
||||||||||||| |||||| || ||||||| |||||||||| ||||| |||||| || |||||||||||||||| | || |||||||||| |
|
|
| T |
45730493 |
catattcatttttgttgatgtaaattaaatgtggttaatttgcttctttgagattgtgcatatcgatcactctcaatcgtcgcctagtttgattgtt--- |
45730397 |
T |
|
| Q |
430 |
acgagcttaattgtaactctaaaagtaataatat-gccactttaata-cttatatatgaaactctacaaaaccagcgcatcacacggcttagagtctagt |
527 |
Q |
| |
|
|||| |||||||||| || ||||||||| || ||||||| |||||||||||||||||||||||| ||||||| |||| ||||||| |||| |
|
|
| T |
45730396 |
------ttaaatgtaactctacaaataataatataatcaatttaatattttatatatgaaactctacaaaacccgcgcatcgaacgggttagagtatagt |
45730303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 545 - 601
Target Start/End: Complemental strand, 5499483 - 5499427
Alignment:
| Q |
545 |
aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcct |
601 |
Q |
| |
|
|||||||||| |||||||| |||| |||||||||||||||||||| || ||||||| |
|
|
| T |
5499483 |
aacccacttgggttggcctggtggtattgacttgagatctgagagtgtgctcctcct |
5499427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 612
Target Start/End: Original strand, 9557320 - 9557387
Alignment:
| Q |
545 |
aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag |
612 |
Q |
| |
|
|||||||||||| |||||| || || ||| |||| ||||||||||| || |||||||| ||||||||| |
|
|
| T |
9557320 |
aacccacttgagctggcctgatagtattggcttgggatctgagagtgtgctcctcctcgagatctcag |
9557387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161 (Bit Score: 90; Significance: 4e-43; HSPs: 3)
Name: scaffold0161
Description:
Target: scaffold0161; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 249 - 537
Target Start/End: Complemental strand, 27102 - 26802
Alignment:
| Q |
249 |
tgttctctatggtttatcatttttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattga |
347 |
Q |
| |
|
||||||||||| ||||||||||||||| |||| ||| ||||||||||||| ||||||||||||||||| | | | ||||| ||||||||||||| || | |
|
|
| T |
27102 |
tgttctctatgatttatcatttttattgtgtttatttccacctttgattatttccactaaatttaattaatgattatgatttcatattcatttttgttaa |
27003 |
T |
|
| Q |
348 |
tgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcac----------catttaatttgattgtttctacgagctt |
437 |
Q |
| |
|
|| || || ||||||||||||||| | ||| | |||||| ||||||||||||||||||||| || || |||||| ||||||| ||| || |
|
|
| T |
27002 |
tgtaaactgaatgtttctaatttgtctctttaagattgtgcatgtcgatcactctcaatcactctcaatcatcacctagtttgatcgtttctatgagttt |
26903 |
T |
|
| Q |
438 |
aattgtaactctaaaagtaataatat-gccactttaatacttatatatgaaactctacaaaaccagcgcatcacacggcttagagtctagttataataaa |
536 |
Q |
| |
|
|| | |||| |||||||||||||||| ||| |||||||||||||||||||||||| ||||| | | | |||||| || |||||||||||||||| |||| |
|
|
| T |
26902 |
aaatataacactaaaagtaataatataaccaatttaatacttatatatgaaactctgcaaaatccgtgtatcacatggattagagtctagttatattaaa |
26803 |
T |
|
| Q |
537 |
a |
537 |
Q |
| |
|
| |
|
|
| T |
26802 |
a |
26802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 424 - 498
Target Start/End: Complemental strand, 7839 - 7764
Alignment:
| Q |
424 |
gtttctacgagcttaattgtaactctaaaagtaataatatg-ccactttaatacttatatatgaaactctacaaaa |
498 |
Q |
| |
|
||||||| ||| |||| | |||| |||||||||||||||| ||| |||||||||||||||||||| ||||||||| |
|
|
| T |
7839 |
gtttctatgagtttaaatataaccctaaaagtaataatataaccaatttaatacttatatatgaaattctacaaaa |
7764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0161; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 256 - 370
Target Start/End: Complemental strand, 8001 - 7886
Alignment:
| Q |
256 |
tatggtttatcatttttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagc |
354 |
Q |
| |
|
|||| ||||||||||||||| |||| ||| ||| | |||||| ||||||||||||||||| | ||| ||||| |||||| |||||| |||| ||| | |
|
|
| T |
8001 |
tatgatttatcatttttattatgtttatttccagatctgattatttccactaaatttaattaatgactatgatttcatatttatttttgttgagacaaac |
7902 |
T |
|
| Q |
355 |
taaatgtttctaattt |
370 |
Q |
| |
|
||||| ||| |||||| |
|
|
| T |
7901 |
taaatatttttaattt |
7886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 2e-42; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 265 - 500
Target Start/End: Original strand, 10484602 - 10484836
Alignment:
| Q |
265 |
tcatttttattttgttgattccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttc |
364 |
Q |
| |
|
||||||||||| |||| |||||| ||||||||||| ||| ||||||||||| | ||||||||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
10484602 |
tcatttttattgtgttatttccacgtttgattactttcacataatttaatttatgagtttgattccatattcatttttgttgatgcaaacagaatgtttc |
10484701 |
T |
|
| Q |
365 |
taatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat- |
463 |
Q |
| |
|
|||||| ||||||||| ||| ||||||| || |||||||||||| ||||| |||||||||||||| || | | ||||||| ||||| ||||||||| |
|
|
| T |
10484702 |
taattttcttttttgagattttgtatgttga-cactctcaatca-tatttagtttgattgtttctatgacttcgaatgtaactataaaattaataatata |
10484799 |
T |
|
| Q |
464 |
gccactttaatacttatatatgaaactctacaaaacc |
500 |
Q |
| |
|
| || ||| |||||||||||||||||||||||||||| |
|
|
| T |
10484800 |
gtcagtttgatacttatatatgaaactctacaaaacc |
10484836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 320 - 528
Target Start/End: Complemental strand, 27024171 - 27023963
Alignment:
| Q |
320 |
actttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaattt |
419 |
Q |
| |
|
||||||||||||||||||||||| || |||||| ||||||||| |||||||||| ||||| |||||| |||||||||||| ||||| || ||| ||| |
|
|
| T |
27024171 |
actttgattccatattcatttttgtttatgcaaactaaatgttgttaatttgcttctttgagattgtgcatgtcgatcactttcaattgtcacttagttt |
27024072 |
T |
|
| Q |
420 |
gattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaata-cttatatatgaaactctacaaaaccagcgcatcacacggctt |
517 |
Q |
| |
|
|||||||| | ||| |||| |||||||||| | |||||||||| |||| ||| ||| |||||||||||||||| ||||||| | ||||| || || || |
|
|
| T |
27024071 |
gattgttttt--gagtttaaatgtaactctacacgtaataatatagccaatttgatattttatatatgaaactctccaaaacccgtgcatcgcaagggtt |
27023974 |
T |
|
| Q |
518 |
agagtctagtt |
528 |
Q |
| |
|
| ||||||||| |
|
|
| T |
27023973 |
aaagtctagtt |
27023963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 265 - 363
Target Start/End: Complemental strand, 19251610 - 19251511
Alignment:
| Q |
265 |
tcatttttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgttt |
363 |
Q |
| |
|
||||||||||| |||| ||| |||| ||||||||||| ||| |||||| |||| || ||||||||||||||||||||| ||||||||| | |||||||| |
|
|
| T |
19251610 |
tcatttttattgtgtttatttccacatttgattactttcacagaatttagtttataagtttgattccatattcatttttgttgatgcaaacaaaatgttt |
19251511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 545 - 612
Target Start/End: Original strand, 51814494 - 51814561
Alignment:
| Q |
545 |
aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag |
612 |
Q |
| |
|
|||||||||| |||||||| ||||| |||||||||||||||||||| || |||||||| || |||||| |
|
|
| T |
51814494 |
aacccacttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaaggtctcag |
51814561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 544 - 602
Target Start/End: Complemental strand, 14787413 - 14787355
Alignment:
| Q |
544 |
taacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctc |
602 |
Q |
| |
|
|||| ||||||||||| |||| |||| ||||||||||| |||||||| |||| |||||| |
|
|
| T |
14787413 |
taactcacttgagttgacctagtggtattgacttgagacctgagagtgtgtttctcctc |
14787355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 365 - 459
Target Start/End: Complemental strand, 19251495 - 19251402
Alignment:
| Q |
365 |
taatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaata |
459 |
Q |
| |
|
|||||| ||||||| | ||| || ||||||| |||||||||||| || ||| |||||||||||||| || || | ||||||||||||| ||||| |
|
|
| T |
19251495 |
taattttcttttttaagattttgcatgtcga-cactctcaatcatcacttagtttgattgtttctatgactttgaatgtaactctaaaattaata |
19251402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 4e-37; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 265 - 498
Target Start/End: Complemental strand, 5586068 - 5585834
Alignment:
| Q |
265 |
tcatttttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgttt |
363 |
Q |
| |
|
||||||||||| |||| ||| ||| ||||||||||| ||| |||||| |||| | |||||||| |||||||||||| ||||||||| | |||||||| |
|
|
| T |
5586068 |
tcatttttattgtgtttatttccatgtttgattactttcacagaatttagtttatgagtttgattctatattcatttttgttgatgcaaacaaaatgttt |
5585969 |
T |
|
| Q |
364 |
ctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat |
463 |
Q |
| |
|
||||||| ||||||||| ||| ||||||| ||| ||||||||||| || ||| |||||||||| ||| || || ||||||||||||| ||||||||| |
|
|
| T |
5585968 |
ctaattttcttttttgagattttgtatgttgat-actctcaatcatcacttagtttgattgttactatgactttggatgtaactctaaaattaataatat |
5585870 |
T |
|
| Q |
464 |
-gccactttaatacttatatatgaaactctacaaaa |
498 |
Q |
| |
|
| | |||||||||||||||||||||||||||||| |
|
|
| T |
5585869 |
agttagtttaatacttatatatgaaactctacaaaa |
5585834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 327 - 429
Target Start/End: Original strand, 11141171 - 11141273
Alignment:
| Q |
327 |
ttccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtt |
426 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| |||||| ||| | ||| |||||| |||||||||||||||||| || |||||||||||||| |
|
|
| T |
11141171 |
ttccatattcatttttgttgatgcaaactaaatgttgttaatttacttctatgaaattgtgcatgtcgatcactctcaattgtcacttaatttgattgtt |
11141270 |
T |
|
| Q |
427 |
tct |
429 |
Q |
| |
|
||| |
|
|
| T |
11141271 |
tct |
11141273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 268 - 424
Target Start/End: Original strand, 25086110 - 25086273
Alignment:
| Q |
268 |
tttttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtt---- |
362 |
Q |
| |
|
|||||||| |||||||| ||||| || ||| |||||||| ||||||||| | || ||| |||||||||||||||| ||||||||| | | |||| |
|
|
| T |
25086110 |
tttttattgtgttgatttccacccttcattgcttccactgaatttaattcatgacgttgtttccatattcatttttgttgatgcaaattgagtgttgttg |
25086209 |
T |
|
| Q |
363 |
-tctaatttgctttttt-gatattgtgtatgtcgatcactctcaatcaccatttaatttgattg |
424 |
Q |
| |
|
||| || ||||||||| || |||||| |||||||||||||||||||| |||||| |||||||| |
|
|
| T |
25086210 |
atctgatctgctttttttgagattgtgcatgtcgatcactctcaatcatcatttagtttgattg |
25086273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 268 - 424
Target Start/End: Original strand, 25144080 - 25144243
Alignment:
| Q |
268 |
tttttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtt---- |
362 |
Q |
| |
|
|||||||| |||||||| ||||| || ||| |||||||| ||||||||| | || ||| |||||||||||||||| ||||||||| | | |||| |
|
|
| T |
25144080 |
tttttattgtgttgatttccacccttcattgcttccactgaatttaattcatgacgttgtttccatattcatttttgttgatgcaaattgagtgttgttg |
25144179 |
T |
|
| Q |
363 |
-tctaatttgctttttt-gatattgtgtatgtcgatcactctcaatcaccatttaatttgattg |
424 |
Q |
| |
|
||| || ||||||||| || |||||| |||||||||||||||||||| |||||| |||||||| |
|
|
| T |
25144180 |
atctgatctgctttttttgagattgtgcatgtcgatcactctcaatcatcatttagtttgattg |
25144243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 80; Significance: 4e-37; HSPs: 13)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 249 - 493
Target Start/End: Original strand, 17909620 - 17909867
Alignment:
| Q |
249 |
tgttctctatggtttatcatttttattttgttgattc-cacctttgattacttccactaaatttaatttacaactttgatt-ccatattcatttttattg |
346 |
Q |
| |
|
||||||||||| ||| ||||||||||| |||||||| ||||||| ||||||| |||| ||||||||||| ||||||||| |||||||||||||| ||| |
|
|
| T |
17909620 |
tgttctctatgatttgtcatttttattgtgttgattttcacctttcattactttcactgaatttaatttatgactttgatttccatattcatttttgttg |
17909719 |
T |
|
| Q |
347 |
atgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaac |
446 |
Q |
| |
|
|||||| | ||| || || || ||||||||||| |||| || ||||||||||| ||||| || ||| ||| ||||||| || ||| || | |||||| |
|
|
| T |
17909720 |
atgcaaattgaatattgctcatctgcttttttgaggttgttcatatcgatcactcttaatcatcacttagtttaattgtttttatgagtttgaatgtaac |
17909819 |
T |
|
| Q |
447 |
tctaaaagtaataata-tgccactttaatacttatatatgaaactcta |
493 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||| |||| |
|
|
| T |
17909820 |
tctaaaagtaataatacaaccaatttaatacttatatatgaaaatcta |
17909867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 290 - 529
Target Start/End: Original strand, 11502532 - 11502764
Alignment:
| Q |
290 |
tttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgta |
389 |
Q |
| |
|
||||||||||| ||| ||||||||||| ||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||| ||| || | |
|
|
| T |
11502532 |
tttgattactttcacataatttaatttatgactttgattccatattcatttttgttgatgcaaact-aatgtttctaatttgcttttttgagattttgca |
11502630 |
T |
|
| Q |
390 |
tgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaatacttatatatgaaa |
488 |
Q |
| |
|
| |||||||||| || || |||||||||||||| || || | ||||||||||||| ||||||| | |||||||| |||||||||||||||| |
|
|
| T |
11502631 |
-------ccctctcaatcatcacatagtttgattgtttctatgactttgaatgtaactctaaaattaataatgtagccactttgatacttatatatgaaa |
11502723 |
T |
|
| Q |
489 |
ctctacaaaaccagcgcatcacacggcttagagtctagtta |
529 |
Q |
| |
|
|||||| ||||| | ||| |||| |||||||||||||| |
|
|
| T |
11502724 |
ctctacgaaacccgtacatagtacgggttagagtctagtta |
11502764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 265 - 494
Target Start/End: Original strand, 6095885 - 6096115
Alignment:
| Q |
265 |
tcatttttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgttt |
363 |
Q |
| |
|
||||||||||| |||| ||| |||| ||||||||||| ||| |||||| |||| | |||||||||||||| |||||| ||||||||| ||||||| |
|
|
| T |
6095885 |
tcatttttattgtgtttatttccacgtttgattactttcacataatttagtttatgagtttgattccatatttatttttgttgatgcaaagagaatgttt |
6095984 |
T |
|
| Q |
364 |
ctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat |
463 |
Q |
| |
|
||| || ||||||||| ||| || ||||| || ||||||||||| || ||| ||||||| |||| | || || | ||||||||||||| ||||||||| |
|
|
| T |
6095985 |
ttaactttcttttttgagattttgcatgtcaat-actctcaatcatcacttagtttgattatttccatgactttgaatgtaactctaaaattaataatat |
6096083 |
T |
|
| Q |
464 |
-gccactttaatacttatatatgaaactctac |
494 |
Q |
| |
|
| || ||| |||||||||||||||| ||||| |
|
|
| T |
6096084 |
agtcattttcatacttatatatgaaaatctac |
6096115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 283 - 498
Target Start/End: Complemental strand, 8207679 - 8207471
Alignment:
| Q |
283 |
ttccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgata |
382 |
Q |
| |
|
|||||| ||||||||||| ||| |||||| |||| | |||| || ||||| ||||||| || |||||| | ||||||||||||||| ||||||||| | |
|
|
| T |
8207679 |
ttccacgtttgattactttcacataatttagtttatgagtttggtttcatatgcatttttttt-atgcaaacaaaatgtttctaattttcttttttgaga |
8207581 |
T |
|
| Q |
383 |
ttgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaatacttata |
481 |
Q |
| |
|
|| ||||||| | |||||||||||| | ||||||||||||| |||| || |||| ||||||||||| ||||||||| || ||| ||||||||| |
|
|
| T |
8207580 |
ttttgtatgttg-gcactctcaatca-tacttaatttgattgtgtctatga-ctta----taactctaaaattaataatataatcagtttgatacttata |
8207488 |
T |
|
| Q |
482 |
tatgaaactctacaaaa |
498 |
Q |
| |
|
||||||||| ||||||| |
|
|
| T |
8207487 |
tatgaaactttacaaaa |
8207471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 397 - 500
Target Start/End: Complemental strand, 41075235 - 41075131
Alignment:
| Q |
397 |
cactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaatacttatatatgaaactctaca |
495 |
Q |
| |
|
|||||||||||| || ||| |||||||||||||| || || | |||||||||||| ||||||||| | || ||| |||||||||||||||| |||||| |
|
|
| T |
41075235 |
cactctcaatcatcacttagtttgattgtttctatgactttgaatgtaactctaaagttaataatatagtcagtttgatacttatatatgaaattctaca |
41075136 |
T |
|
| Q |
496 |
aaacc |
500 |
Q |
| |
|
||||| |
|
|
| T |
41075135 |
aaacc |
41075131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 545 - 612
Target Start/End: Complemental strand, 45672454 - 45672387
Alignment:
| Q |
545 |
aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag |
612 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||||| || ||||||||||||||||||| |||||| |
|
|
| T |
45672454 |
aacccacttgggttggccttgtggttttgccttgagaccttggagtatgttcctcctctaggtctcag |
45672387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 544 - 602
Target Start/End: Complemental strand, 4439056 - 4438998
Alignment:
| Q |
544 |
taacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctc |
602 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||| ||||||||||| || |||||||| |
|
|
| T |
4439056 |
taacccacttgggttggcctaatggtattaacttgggatctgagagtgtgctcctcctc |
4438998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 441 - 498
Target Start/End: Complemental strand, 15253395 - 15253337
Alignment:
| Q |
441 |
tgtaactctaaaagtaataatatgc-cactttaatacttatatatgaaactctacaaaa |
498 |
Q |
| |
|
||||| ||||||| |||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
15253395 |
tgtaattctaaaattaataatatggtcattttaatacttatatatgaaactctacaaaa |
15253337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 545 - 602
Target Start/End: Complemental strand, 11738120 - 11738063
Alignment:
| Q |
545 |
aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctc |
602 |
Q |
| |
|
|||||||||||||||| || |||| |||||| ||||||||||||| ||||||||||| |
|
|
| T |
11738120 |
aacccacttgagttggattagtggtattgactagagatctgagagtgtgttcctcctc |
11738063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 612
Target Start/End: Complemental strand, 34041664 - 34041597
Alignment:
| Q |
545 |
aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag |
612 |
Q |
| |
|
|||||||||| ||||||||| |||| ||||||| ||||||||||| || |||||||| || |||||| |
|
|
| T |
34041664 |
aacccacttgggttggcctagtggtattgacttaggatctgagagtgtgctcctcctcaaggtctcag |
34041597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 612
Target Start/End: Original strand, 35916086 - 35916153
Alignment:
| Q |
545 |
aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag |
612 |
Q |
| |
|
|||||||||| ||||| || |||| |||||||||||| | ||||| ||||||||||| ||||||||| |
|
|
| T |
35916086 |
aacccacttgggttggtctggtggtattgacttgagatttaagagtgtgttcctcctcaagatctcag |
35916153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 545 - 612
Target Start/End: Complemental strand, 45672305 - 45672238
Alignment:
| Q |
545 |
aacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag |
612 |
Q |
| |
|
|||||||||| ||||||| |||||||| ||||||| || ||||||||||||||||||| |||||| |
|
|
| T |
45672305 |
aacccacttggattggccttgtggttttgccttgagaccttggagtatgttcctcctctaggtctcag |
45672238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 544 - 598
Target Start/End: Complemental strand, 5147756 - 5147702
Alignment:
| Q |
544 |
taacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcct |
598 |
Q |
| |
|
||||||||||| ||||| ||| |||| ||||||||||||||| ||||||| |||| |
|
|
| T |
5147756 |
taacccacttgggttggtctagtggtattgacttgagatctgggagtatgctcct |
5147702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 327 - 530
Target Start/End: Original strand, 37381724 - 37381928
Alignment:
| Q |
327 |
ttccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtt |
426 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||| |||||||||| ||||| ||||||||| ||||||||||||||| || |||||||||||||| |
|
|
| T |
37381724 |
ttccatattcatttttgttgatgcaaactaaatgttgttaatttgcttctttgagattgtgtatatcgatcactctcaattgtcacttaatttgattgtt |
37381823 |
T |
|
| Q |
427 |
tctacgagcttaattgtaactctaaaagtaataatat-gccactttaata-cttatatatgaaactctacaaaacca-gcgcatcacacggcttagagtc |
523 |
Q |
| |
|
||| ||| |||| |||||||||| | ||||||||| | || ||| ||| |||||||||||||||||||||| || | ||||| ||||| | |||||| |
|
|
| T |
37381824 |
tct--gagtttaaatgtaactctacgattaataatatagtcaatttgatattttatatatgaaactctacaaaaacacgtgcatcgcacgggtcagagtc |
37381921 |
T |
|
| Q |
524 |
tagttat |
530 |
Q |
| |
|
||||||| |
|
|
| T |
37381922 |
tagttat |
37381928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 9e-29; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 290 - 478
Target Start/End: Original strand, 22209545 - 22209733
Alignment:
| Q |
290 |
tttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgta |
389 |
Q |
| |
|
||||||||||| ||| ||||||||||| | |||||||| |||||||||||| ||||||||| |||| | ||| |||||||||||||||| ||| || | |
|
|
| T |
22209545 |
tttgattactttcacataatttaatttatgaatttgattcgatattcatttttgttgatgcaaactaa-tatttttaatttgcttttttgagattttgca |
22209643 |
T |
|
| Q |
390 |
tgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaatactt |
478 |
Q |
| |
|
|||||| |||||||||||| || ||| ||||||||||| || | |||| | ||||||||||| ||||||||| |||||||||| |||| |
|
|
| T |
22209644 |
tgtcgaccactctcaatcatcacttagtttgattgtttttatcactttaaatataactctaaaattaataatatagccactttaacactt |
22209733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 322 - 498
Target Start/End: Original strand, 42935761 - 42935934
Alignment:
| Q |
322 |
tttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttga |
421 |
Q |
| |
|
|||| |||||||| ||||||| | |||||| | ||||||||||||||| ||||||||| ||| ||||||| | |||||||||||| | ||||||||| |
|
|
| T |
42935761 |
tttggttccatatgcattttttt--atgcaaacaaaatgtttctaattttcttttttgagattttgtatgttg-gcactctcaatca-tacttaatttga |
42935856 |
T |
|
| Q |
422 |
ttgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaatacttatatatgaaactctacaaaa |
498 |
Q |
| |
|
|||| |||| || |||| | ||||||||||| ||||||||| | || ||| |||||||||||||||||| ||||||| |
|
|
| T |
42935857 |
ttgtgtctatgactttaaatataactctaaaattaataatatagtcagtttgatacttatatatgaaactttacaaaa |
42935934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 320 - 496
Target Start/End: Complemental strand, 8191982 - 8191806
Alignment:
| Q |
320 |
actttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaattt |
419 |
Q |
| |
|
||||||||||||||||||||||| || |||||| |||||||||| ||| || ||| ||| | |||||| |||||||||| ||||||| || ||| ||| |
|
|
| T |
8191982 |
actttgattccatattcatttttgttaatgcaaactaaatgtttttaactttcttctttaaaattgtgcatgtcgatcattctcaattgtcacttagttt |
8191883 |
T |
|
| Q |
420 |
gattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaata-cttatatatgaaactctacaa |
496 |
Q |
| |
|
||||||| | ||| |||| ||||||||| || ||||||||| | || ||||||| ||||| |||||||||||||| |
|
|
| T |
8191882 |
aattgttttt--gagtttaaaagtaactctataaataataatatagtcaatttaatattttatacatgaaactctacaa |
8191806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 327 - 429
Target Start/End: Original strand, 54421200 - 54421302
Alignment:
| Q |
327 |
ttccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtt |
426 |
Q |
| |
|
|||||||||||||||| |||||| || ||||||||| || ||||||| ||||| |||||| |||||||| ||||||||| || ||| |||||||||| |
|
|
| T |
54421200 |
ttccatattcatttttgttgatgtaaactaaatgttgttactttgcttctttgagattgtgcatgtcgataactctcaattgtcacttagtttgattgtt |
54421299 |
T |
|
| Q |
427 |
tct |
429 |
Q |
| |
|
||| |
|
|
| T |
54421300 |
tct |
54421302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 544 - 612
Target Start/End: Original strand, 46545710 - 46545778
Alignment:
| Q |
544 |
taacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag |
612 |
Q |
| |
|
||||||||||| ||||||||| |||| ||| ||||||| |||||||| || |||||||| ||||||||| |
|
|
| T |
46545710 |
taacccacttgggttggcctagtggtattggcttgagacctgagagtgtgctcctcctcaagatctcag |
46545778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 463
Target Start/End: Original strand, 19878503 - 19878584
Alignment:
| Q |
382 |
attgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat |
463 |
Q |
| |
|
|||||| |||||||||||||||||||| || ||| |||||| |||||| ||| || | ||||||| ||| |||||||||| |
|
|
| T |
19878503 |
attgtgcatgtcgatcactctcaatcatcacttagtttgataatttctatgagtttgaatgtaactttaagggtaataatat |
19878584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 8e-17; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 330 - 462
Target Start/End: Original strand, 19403527 - 19403657
Alignment:
| Q |
330 |
catattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttct |
429 |
Q |
| |
|
|||||| |||||| ||||||| | ||||||||| |||||||||| ||||| |||||| ||||| |||||||||||| || ||| ||||||||||||| |
|
|
| T |
19403527 |
catattaatttttgttgatgctaactaaatgttgttaatttgcttctttgagattgtgcatgtcaatcactctcaattgtcacttagtttgattgtttct |
19403626 |
T |
|
| Q |
430 |
acgagcttaattgtaactctaaaagtaataata |
462 |
Q |
| |
|
||| |||| |||||||||| || |||||||| |
|
|
| T |
19403627 |
--gagtttaaatgtaactctacaattaataata |
19403657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 330 - 523
Target Start/End: Complemental strand, 15107579 - 15107386
Alignment:
| Q |
330 |
catattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttct |
429 |
Q |
| |
|
|||||||||| || |||||||| ||||||||| |||||||||| ||||| |||||| |||||||||| ||||||| || ||| ||||||||||||| |
|
|
| T |
15107579 |
catattcattattgttgatgcagactaaatgttgttaatttgcttctttgagattgtgcatgtcgatcattctcaattgtcacttagtttgattgtttct |
15107480 |
T |
|
| Q |
430 |
acgagcttaattgtaactctaaaagtaataatat-gccactttaata-cttatatatgaaactctacaaaaccagcgcatcacacggcttagagtc |
523 |
Q |
| |
|
||| |||| |||||||||| | ||||||||| |||| ||| ||| |||| |||||||||||| |||| | | ||||| || || |||||||| |
|
|
| T |
15107479 |
--gagtttaaatgtaactctacgattaataatatagccaatttgatattttatttatgaaactctaaaaaatccgtgcatctcatgggttagagtc |
15107386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 265 - 429
Target Start/End: Original strand, 3622075 - 3622240
Alignment:
| Q |
265 |
tcatttttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgttt |
363 |
Q |
| |
|
||||||||||| |||| ||| |||||||||||||||| ||| |||| || |||| | ||||||||| |||| |||||| ||||||||| |||| ||| |
|
|
| T |
3622075 |
tcatttttattgtgtttatttccacctttgattactttcacaaaatgtagtttatgagtttgattccgtatttatttttgttgatgcaaatgaaattttt |
3622174 |
T |
|
| Q |
364 |
ctaa-tttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttct |
429 |
Q |
| |
|
||| ||| |||||||| ||| || |||||||| ||||||||||| | ||| ||||||||||||| |
|
|
| T |
3622175 |
ttaattttttttttttgagattttgcatgtcgat-actctcaatcattagttagtttgattgtttct |
3622240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 249 - 302
Target Start/End: Complemental strand, 34355370 - 34355316
Alignment:
| Q |
249 |
tgttctctatggtttatcatttttattttgttgat-tccacctttgattacttcc |
302 |
Q |
| |
|
||||||||||| ||||||||||| ||| | ||||| ||||||||||||||||||| |
|
|
| T |
34355370 |
tgttctctatgatttatcattttaattgtattgatatccacctttgattacttcc |
34355316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 320 - 496
Target Start/End: Complemental strand, 18557 - 18381
Alignment:
| Q |
320 |
actttgattccatattcatttttattgatgcaagctaaatgtttctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaattt |
419 |
Q |
| |
|
||||||||||||||||||||||| || |||||| |||||||||| ||| || ||| ||| | |||||| |||||||||| ||||||| || ||| ||| |
|
|
| T |
18557 |
actttgattccatattcatttttgttaatgcaaactaaatgtttttaactttcttctttaaaattgtgcatgtcgatcattctcaattgtcacttagttt |
18458 |
T |
|
| Q |
420 |
gattgtttctacgagcttaattgtaactctaaaagtaataatat-gccactttaata-cttatatatgaaactctacaa |
496 |
Q |
| |
|
||||||| | ||| |||| ||||||||| || ||||||||| | || ||||||| ||||| |||||||||||||| |
|
|
| T |
18457 |
aattgttttt--gagtttaaaagtaactctataaataataatatagtcaatttaatattttatacatgaaactctacaa |
18381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0118 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0118
Description:
Target: scaffold0118; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 544 - 612
Target Start/End: Complemental strand, 41710 - 41642
Alignment:
| Q |
544 |
taacccacttgagttggcctaatggttttgacttgagatctgagagtatgttcctcctctagatctcag |
612 |
Q |
| |
|
||||||||||| ||||||||| |||| ||| ||||||||||||||||||| |||||||| || |||||| |
|
|
| T |
41710 |
taacccacttgggttggcctagtggtattggcttgagatctgagagtatgctcctcctcgaggtctcag |
41642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 265 - 463
Target Start/End: Original strand, 44323 - 44520
Alignment:
| Q |
265 |
tcatttttattttgttgatt-ccacctttgattacttccactaaatttaatttacaactttgattccatattcatttttattgatgcaagctaaatgttt |
363 |
Q |
| |
|
||||||||||| |||| ||| |||| ||||||||||| ||| |||||||||| | ||||||| | ||||||||||| ||||||||| ||||||| |
|
|
| T |
44323 |
tcatttttattgtgtttatttccacgtttgattactttcacattatttaatttatgagtttgatttcctattcatttttgttgatgcaaaaagaatgttt |
44422 |
T |
|
| Q |
364 |
ctaatttgcttttttgatattgtgtatgtcgatcactctcaatcaccatttaatttgattgtttctacgagcttaattgtaactctaaaagtaataatat |
463 |
Q |
| |
|
| |||| || ||||| ||| ||||||| || |||||||||||| | |||||||||||||||||| | || | ||||||||||||| ||||||||| |
|
|
| T |
44423 |
atgattttctcttttgtgattttgtatgttga-cactctcaatca-tacttaatttgattgtttctataacttttaatgtaactctaaaattaataatat |
44520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0317 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0317
Description:
Target: scaffold0317; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 19896 - 19843
Alignment:
| Q |
249 |
tgttctctatggtttatcatttttattttgttgat-tccacctttgattacttc |
301 |
Q |
| |
|
||||||||| | ||||||||||| ||| ||||||| |||||||||||||||||| |
|
|
| T |
19896 |
tgttctctacgatttatcattttaattgtgttgatatccacctttgattacttc |
19843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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