View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1967_low_3 (Length: 404)
Name: NF1967_low_3
Description: NF1967
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1967_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Complemental strand, 37019887 - 37019511
Alignment:
| Q |
18 |
gattctggttggtggaaggcaagatttggtgaagatacaatcatggctaatttagattcaggttagtttttatagatgnnnnnnnnnnttaagtaaatat |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37019887 |
gattctggttggtggaaggcaagatttggtgaagatacaatcatggctaatttagattcaggttagtttttatagatgaaaaaaaaaattaagtaaatat |
37019788 |
T |
|
| Q |
118 |
ttcctattacattacatatctagatgtaaaatagaagaacttggtgagtaaaataatttcacgtgtgcatcgaattcaatgatatgttgcacatcatgag |
217 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37019787 |
ttcctattatattacatatctagatgtaaaatagaagaacttggtgagtaaaataatttcacgtgtgcatcgaattcaatgatatgttgcacatcatgag |
37019688 |
T |
|
| Q |
218 |
ttaaaaacacattatttatcatactctatggttccacattccaaaattaattataaacgtgtaaaattgattttgacatgtttgttgttgaaacaggcgt |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
37019687 |
ttaaaaacacattatttatcatactctatggttccacattccaaaattaattataaacgtgtaaaattgattttgacatgtttgttattgaaacaggcgt |
37019588 |
T |
|
| Q |
318 |
ttggccggaacatgaaagtttcagtggcattggatatggtcctgtgccatcaaagtggcatggaaatggggtctgtg |
394 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37019587 |
ttggccggaacatgaaagtttcagtggcattggatatggtccagtgccatcaaagtggcatggaaatggggtctgtg |
37019511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 259 - 301
Target Start/End: Original strand, 31303124 - 31303166
Alignment:
| Q |
259 |
caaaattaattataaacgtgtaaaattgattttgacatgtttg |
301 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||| |
|
|
| T |
31303124 |
caaaattaattataaatgtgtaaaactgattttgacatgtttg |
31303166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 262 - 302
Target Start/End: Complemental strand, 4080431 - 4080391
Alignment:
| Q |
262 |
aattaattataaacgtgtaaaattgattttgacatgtttgt |
302 |
Q |
| |
|
|||| ||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
4080431 |
aattgattctaaaggtgtaaaattgattttgacatgtttgt |
4080391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 302
Target Start/End: Complemental strand, 10055233 - 10055189
Alignment:
| Q |
258 |
ccaaaattaattataaacgtgtaaaattgattttgacatgtttgt |
302 |
Q |
| |
|
|||||||| |||||||||||||| ||| ||||||||||| ||||| |
|
|
| T |
10055233 |
ccaaaattgattataaacgtgtagaatcgattttgacatttttgt |
10055189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 300
Target Start/End: Original strand, 30472857 - 30472897
Alignment:
| Q |
260 |
aaaattaattataaacgtgtaaaattgattttgacatgttt |
300 |
Q |
| |
|
|||||| ||| ||||| |||||||||||||||||||||||| |
|
|
| T |
30472857 |
aaaattgattctaaacatgtaaaattgattttgacatgttt |
30472897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 1232844 - 1232804
Alignment:
| Q |
258 |
ccaaaattaattataaacgtgtaaaattgattttgacatgt |
298 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||| |||| |
|
|
| T |
1232844 |
ccaaaagtgattataaacgtgtaaaattgattttgaaatgt |
1232804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University